Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014159

Physical Location & Seq

Genomic Coordinates Reverse (-)

3834361 .. 3835107

Gene Structure 747 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G12030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGCGACTACGATTCCACTCTTCGCCTCTTTCAAATACGCCGATAGCTTAACGGTCGTAGGAATCTCCTTCTGCACCGCGTTGGTCTGCGAAGCCATCTCATGGATCTTAATCTACCGTACCAGCTCATACAAATCCTTGAAATACTCCATTGACAAGGCCACGAAGAAACTCGAGACAATGAAGACAGAGAATCCATCGTCAAAGCTATCCATAAAGAAATCAAAGACGAAGAAGATCGATCGCGTTGAAACCAGCTTAAAGGAATCGAGCCGAGATCTGTCACTCTTCAAGTTCAAATCCGGCGCCGTTGTGGCACTGGTTCTCTTCGTCGTCTTCGGATTGCTCAATTCACTATTCGAAGGTAAAGTCGTCGCGAAGCTTCCTTTCCATCCGATCACGATAGTGAAGAAGATGAGTCACAGGGGACTGAAAGGTGATGATCCGACGGATTGTTCCATGGCTTTTCTCTATCTGCTGTGTTCAATTAGTATCAGAACCAATCTACAGAAATTTCTAGGGTTTTCTCCGCCGCGAGGAGCTGCTGGTGCTGGTGGTTTGTTCCCCATGCCTGATCCTAAGACCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0006950 GO:0006983 GO:0006984 GO:0007154 GO:0007165 GO:0008150 GO:0008324 GO:0009607 GO:0009987 GO:0012505 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0019725 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0030003 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032469 GO:0033554 GO:0034220 GO:0034976 GO:0042175 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071216 GO:0072503 GO:0072507 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF106

Protein Analysis

196

Amino Acids

21.53

Weight (kDa)

9.78

Isoelectric Point (pI)

21.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMC3_TMCO1	PF01956	17 - 176	1e-31	Integral membrane protein EMC3/TMCO1-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12030 AT5G06660
fragaria_vesca	FvH4_6g21840
malus_domestica	MD00G1019800.v1.1 MD12G1054500.v1.1 MD14G1053500.v1.1
prunus_persica	Prupe.7G082200_v2.0.a1
pyrus_communis	pycom11g10000 pycom12g04750
rosa_chinensis	RchiOBHm_Chr3g0479191
rosa_laevigata	RLG00000023597
rosa_multiflora	Rmu_sc0002978.1_g000022 Rmu_sc0015470.1_g000009
rosa_roxburghii	Rroxscaffold_6G00402570
rosa_rugosa	Rorug03G0172000
rosa_samantha	Rh3CG252000
rosa_wichuraiana	Rw3G020030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	305
AccB7I	CCANNNNNTGG	1 cut(s)	102
AccII	CGCG	4 cut(s)	80, 246, 377, 535
AciI	CCGC	3 cut(s)	78, 530, 533
AclWI	GGATC	3 cut(s)	113, 437, 569
AcsI	RAATTY	1 cut(s)	512
AcyI	GRCGYC	1 cut(s)	306
AfaI	GTAC	1 cut(s)	121
AfiI	CCNNNNNNNGG	2 cut(s)	102, 536
AgsI	TTSAA	6 cut(s)	34, 142, 251, 292, 298, 486
AleI	CACNNNNGTG	1 cut(s)	404
AluBI	AGCT	6 cut(s)	48, 126, 208, 258, 382, 542
AluI	AGCT	6 cut(s)	48, 126, 208, 258, 382, 542
Alw26I	GTCTC	1 cut(s)	170
AlwI	GGATC	3 cut(s)	113, 437, 569
Ama87I	CYCGRG	1 cut(s)	173
AoxI	GGCC	1 cut(s)	159
ApeKI	GCWGC	1 cut(s)	542
ApoI	RAATTY	1 cut(s)	512
ArsI	GACNNNNNNTTYG	2 cut(s)	354, 386
AspLEI	GCGC	1 cut(s)	308
AsuHPI	GGTGA	1 cut(s)	449
AsuII	TTCGAA	1 cut(s)	360
AvaI	CYCGRG	1 cut(s)	173
BanI	GGYRCC	1 cut(s)	305
BbsI	GAAGAC	2 cut(s)	191, 328
BbvI	GCAGC	1 cut(s)	529
BccI	CCATC	3 cut(s)	104, 205, 399
BceAI	ACGGC	1 cut(s)	293
BcoDI	GTCTC	1 cut(s)	170
BfaI	CTAG	1 cut(s)	518
BfmI	CTRYAG	1 cut(s)	506
BfoI	RGCGCY	1 cut(s)	309
BglI	GCCNNNNNGGC	1 cut(s)	314
BglII	AGATCT	1 cut(s)	277
BisI	GCNGC	2 cut(s)	533, 543
BlsI	GCNGC	2 cut(s)	534, 544
BmeT110I	CYCGRG	1 cut(s)	173
BmiI	GGNNCC	1 cut(s)	307
BpiI	GAAGAC	2 cut(s)	191, 328
Bpu14I	TTCGAA	1 cut(s)	360
Bsa29I	ATCGAT	1 cut(s)	240
BsaBI	GATNNNNATC	1 cut(s)	110
BsaHI	GRCGYC	1 cut(s)	306
BsaJI	CCNNGG	1 cut(s)	459
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 536
Bse1I	ACTGG	1 cut(s)	324
Bse8I	GATNNNNATC	1 cut(s)	110
BseCI	ATCGAT	1 cut(s)	240
BseDI	CCNNGG	1 cut(s)	459
BseGI	GGATG	1 cut(s)	391
BseJI	GATNNNNATC	1 cut(s)	110
BseLI	CCNNNNNNNGG	2 cut(s)	102, 536
BseNI	ACTGG	1 cut(s)	324
BseRI	GAGGAG	1 cut(s)	552
BseXI	GCAGC	1 cut(s)	529
BsgI	GTGCAG	1 cut(s)	58
Bsh1236I	CGCG	4 cut(s)	80, 246, 377, 535
Bsh1285I	CGRYCG	2 cut(s)	57, 244
BshFI	GGCC	1 cut(s)	161
BshNI	GGYRCC	1 cut(s)	305
BshVI	ATCGAT	1 cut(s)	240
BsiEI	CGRYCG	2 cut(s)	57, 244
BsiHKCI	CYCGRG	1 cut(s)	173
BsiSI	CCGG	1 cut(s)	303
BslFI	GGGAC	1 cut(s)	441
BslI	CCNNNNNNNGG	2 cut(s)	102, 536
BsmAI	GTCTC	1 cut(s)	170
BsmFI	GGGAC	1 cut(s)	441
BsnI	GGCC	1 cut(s)	161
BsoBI	CYCGRG	1 cut(s)	173
Bsp119I	TTCGAA	1 cut(s)	360
Bsp143I	GATC	7 cut(s)	105, 237, 241, 277, 396, 442, 574
Bsp19I	CCATGG	1 cut(s)	459
Bsp68I	TCGCGA	1 cut(s)	377
BspACI	CCGC	3 cut(s)	78, 530, 533
BspANI	GGCC	1 cut(s)	161
BspDI	ATCGAT	1 cut(s)	240
BspFNI	CGCG	4 cut(s)	80, 246, 377, 535
BspLI	GGNNCC	1 cut(s)	307
BspPI	GGATC	3 cut(s)	113, 437, 569
BspT104I	TTCGAA	1 cut(s)	360
BspT107I	GGYRCC	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	324
BssECI	CCNNGG	1 cut(s)	459
BssMI	GATC	7 cut(s)	105, 237, 241, 277, 396, 442, 574
BssNI	GRCGYC	1 cut(s)	306
BssT1I	CCWWGG	1 cut(s)	459
Bst4CI	ACNGT	2 cut(s)	55, 119
Bst6I	CTCTTC	3 cut(s)	26, 293, 332
BstACI	GRCGYC	1 cut(s)	306
BstBI	TTCGAA	1 cut(s)	360
BstDEI	CTNAG	1 cut(s)	579
BstDSI	CCRYGG	1 cut(s)	459
BstF5I	GGATG	1 cut(s)	391
BstFNI	CGCG	4 cut(s)	80, 246, 377, 535
BstH2I	RGCGCY	1 cut(s)	309
BstHHI	GCGC	1 cut(s)	308
BstKTI	GATC	7 cut(s)	108, 240, 244, 280, 399, 445, 577
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	7 cut(s)	105, 237, 241, 277, 396, 442, 574
BstMCI	CGRYCG	2 cut(s)	57, 244
BstMWI	GCNNNNNNNGC	2 cut(s)	314, 548
BstSFI	CTRYAG	1 cut(s)	506
BstUI	CGCG	4 cut(s)	80, 246, 377, 535
BstV1I	GCAGC	1 cut(s)	529
BstV2I	GAAGAC	2 cut(s)	191, 328
BstX2I	RGATCY	2 cut(s)	105, 277
BstYI	RGATCY	2 cut(s)	105, 277
Bsu15I	ATCGAT	1 cut(s)	240
BsuRI	GGCC	1 cut(s)	161
BsuTUI	ATCGAT	1 cut(s)	240
BtgI	CCRYGG	1 cut(s)	459
BtsCI	GGATG	1 cut(s)	391
BtsIMutI	CAGTG	1 cut(s)	317
BtuMI	TCGCGA	1 cut(s)	377
CfoI	GCGC	1 cut(s)	308
ClaI	ATCGAT	1 cut(s)	240
Csp6I	GTAC	1 cut(s)	120
CviAII	CATG	3 cut(s)	102, 460, 568
CviQI	GTAC	1 cut(s)	120
DdeI	CTNAG	1 cut(s)	579
DinI	GGCGCC	1 cut(s)	307
DpnI	GATC	7 cut(s)	107, 239, 243, 279, 398, 444, 576
DpnII	GATC	7 cut(s)	105, 237, 241, 277, 396, 442, 574
Eam1104I	CTCTTC	3 cut(s)	26, 293, 332
EarI	CTCTTC	3 cut(s)	26, 293, 332
EciI	GGCGGA	1 cut(s)	519
Eco130I	CCWWGG	1 cut(s)	459
Eco88I	CYCGRG	1 cut(s)	173
EcoT14I	CCWWGG	1 cut(s)	459
EgeI	GGCGCC	1 cut(s)	307
EheI	GGCGCC	1 cut(s)	307
ErhI	CCWWGG	1 cut(s)	459
FaeI	CATG	3 cut(s)	105, 463, 571
FaiI	YATR	5 cut(s)	103, 130, 215, 461, 569
FaqI	GGGAC	1 cut(s)	441
FatI	CATG	3 cut(s)	101, 459, 567
Fnu4HI	GCNGC	2 cut(s)	533, 543
FokI	GGATG	1 cut(s)	378
Fsp4HI	GCNGC	2 cut(s)	533, 543
FspBI	CTAG	1 cut(s)	518
GlaI	GCGC	1 cut(s)	307
GluI	GCNGC	2 cut(s)	533, 543
HaeII	RGCGCY	1 cut(s)	309
HaeIII	GGCC	1 cut(s)	161
HapII	CCGG	1 cut(s)	303
HhaI	GCGC	1 cut(s)	308
Hin1I	GRCGYC	1 cut(s)	306
Hin1II	CATG	3 cut(s)	105, 463, 571
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HindIII	AAGCTT	1 cut(s)	380
HinfI	GANTC	5 cut(s)	13, 63, 193, 266, 418
HpaII	CCGG	1 cut(s)	303
HphI	GGTGA	1 cut(s)	449
Hpy188I	TCNGA	4 cut(s)	341, 396, 447, 497
Hpy188III	TCNNGA	3 cut(s)	175, 376, 400
Hpy99I	CGWCG	3 cut(s)	335, 377, 451
HpyAV	CCTTC	2 cut(s)	79, 356
HpyCH4III	ACNGT	2 cut(s)	55, 119
HpyCH4V	TGCA	1 cut(s)	75
HpyF10VI	GCNNNNNNNGC	2 cut(s)	314, 548
HpyF3I	CTNAG	1 cut(s)	579
Hsp92I	GRCGYC	1 cut(s)	306
Hsp92II	CATG	3 cut(s)	105, 463, 571
HspAI	GCGC	1 cut(s)	306
KasI	GGCGCC	1 cut(s)	305
Kzo9I	GATC	7 cut(s)	105, 237, 241, 277, 396, 442, 574
LmnI	GCTCC	1 cut(s)	539
LpnPI	CCDG	8 cut(s)	136, 268, 305, 316, 409, 531, 537, 585
Lsp1109I	GCAGC	1 cut(s)	529
MaeI	CTAG	1 cut(s)	518
MaeIII	GTNAC	2 cut(s)	282, 419
MalI	GATC	7 cut(s)	107, 239, 243, 279, 398, 444, 576
MboI	GATC	7 cut(s)	105, 237, 241, 277, 396, 442, 574
MflI	RGATCY	2 cut(s)	105, 277
MluCI	AATT	3 cut(s)	349, 486, 512
Mly113I	GGCGCC	1 cut(s)	306
MlyI	GAGTC	1 cut(s)	427
MmeI	TCCRAC	1 cut(s)	470
MnlI	CCTC	2 cut(s)	37, 530
MseI	TTAA	3 cut(s)	50, 110, 260
MslI	CAYNNNNRTG	1 cut(s)	404
MspI	CCGG	1 cut(s)	303
MvnI	CGCG	4 cut(s)	80, 246, 377, 535
MwoI	GCNNNNNNNGC	2 cut(s)	314, 548
NarI	GGCGCC	1 cut(s)	306
NcoI	CCATGG	1 cut(s)	459
NdeII	GATC	7 cut(s)	105, 237, 241, 277, 396, 442, 574
NlaIII	CATG	3 cut(s)	105, 463, 571
NlaIV	GGNNCC	1 cut(s)	307
NmeAIII	GCCGAG	1 cut(s)	299
NmuCI	GTSAC	2 cut(s)	282, 419
NruI	TCGCGA	1 cut(s)	377
NspV	TTCGAA	1 cut(s)	360
OliI	CACNNNNGTG	1 cut(s)	404
PaeR7I	CTCGAG	1 cut(s)	173
PfeI	GAWTC	4 cut(s)	13, 63, 193, 266
PflMI	CCANNNNNTGG	1 cut(s)	102
PkrI	GCNGC	2 cut(s)	534, 544
Ple19I	CGATCG	1 cut(s)	244
PleI	GAGTC	1 cut(s)	426
PluTI	GGCGCC	1 cut(s)	309
PpsI	GAGTC	1 cut(s)	426
PspN4I	GGNNCC	1 cut(s)	307
PsuI	RGATCY	2 cut(s)	105, 277
PvuI	CGATCG	1 cut(s)	244
RruI	TCGCGA	1 cut(s)	377
RsaI	GTAC	1 cut(s)	121
RsaNI	GTAC	1 cut(s)	120
RseI	CAYNNNNRTG	1 cut(s)	404
SaqAI	TTAA	3 cut(s)	50, 110, 260
SatI	GCNGC	2 cut(s)	533, 543
Sau3AI	GATC	7 cut(s)	105, 237, 241, 277, 396, 442, 574
SchI	GAGTC	1 cut(s)	427
SetI	ASST	8 cut(s)	50, 128, 210, 260, 367, 384, 439, 544
SfcI	CTRYAG	1 cut(s)	506
SfoI	GGCGCC	1 cut(s)	307
Sfr274I	CTCGAG	1 cut(s)	173
SfuI	TTCGAA	1 cut(s)	360
SlaI	CTCGAG	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	404
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	3 cut(s)	349, 486, 512
SsiI	CCGC	3 cut(s)	78, 530, 533
SspDI	GGCGCC	1 cut(s)	305
SspMI	CTAG	1 cut(s)	518
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	2 cut(s)	55, 119
TaqI	TCGA	4 cut(s)	174, 240, 269, 360
TasI	AATT	3 cut(s)	349, 486, 512
TauI	GCSGC	1 cut(s)	535
TfiI	GAWTC	4 cut(s)	13, 63, 193, 266
Tru1I	TTAA	3 cut(s)	50, 110, 260
Tru9I	TTAA	3 cut(s)	50, 110, 260
TscAI	CASTG	1 cut(s)	324
TseFI	GTSAC	2 cut(s)	282, 419
TseI	GCWGC	1 cut(s)	542
Tsp45I	GTSAC	2 cut(s)	282, 419
TspDTI	ATGAA	1 cut(s)	197
TspGWI	ACGGA	1 cut(s)	464
TspRI	CASTG	1 cut(s)	324
Van91I	CCANNNNNTGG	1 cut(s)	102
XapI	RAATTY	1 cut(s)	512
XhoI	CTCGAG	1 cut(s)	173
XspI	CTAG	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.