Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0014159

Physical Location & Seq

Genomic Coordinates Forward (+)

5377894 .. 5378241

Gene Structure 348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1053500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGAAGACCAACTCCACCTCCGCCACCAAAATTACCAAAAAGTCCAAGACCAAGAAGATCGACCGCGTTGAGAGCAGCCTCAAGGAATCAAGCCACAATTTGTCGCTCTTCAAGTTCAAGTCCGGCGCCGTCGTAGCCCTCGTCCTCTTCGTCGTCTTCAGATTGCTTAACTCGTTGTTCGAGGGGAAGGCGGTGGCGAAGTTACCCTGTAAGCCCTTTAGGTTGGTGATGAAGATGAGCCACAGAGGGCTGCAAGGGGAGGATGCGACTAACTGTTCAATGGCGTTTTTGTATTTTCTGTGCTTGATCAGTATTCAGACCAATTTGCAGAAGTTCTTGGGCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0006950 GO:0006983 GO:0006984 GO:0007154 GO:0007165 GO:0008150 GO:0008324 GO:0009607 GO:0009987 GO:0012505 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0019725 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0030003 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032469 GO:0033554 GO:0034220 GO:0034976 GO:0042175 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071216 GO:0072503 GO:0072507 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF106

Protein Analysis

116

Amino Acids

12.88

Weight (kDa)

10.13

Isoelectric Point (pI)

24.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMC3_TMCO1	PF01956	5 - 115	1.2e-21	Integral membrane protein EMC3/TMCO1-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12030 AT5G06660
fragaria_vesca	FvH4_6g21840
malus_domestica	MD00G1019800.v1.1 MD12G1054500.v1.1 MD14G1053500.v1.1
prunus_persica	Prupe.7G082200_v2.0.a1
pyrus_communis	pycom11g10000 pycom12g04750
rosa_chinensis	RchiOBHm_Chr3g0479191
rosa_laevigata	RLG00000023597
rosa_multiflora	Rmu_sc0002978.1_g000022 Rmu_sc0015470.1_g000009
rosa_roxburghii	Rroxscaffold_6G00402570
rosa_rugosa	Rorug03G0172000
rosa_samantha	Rh3CG252000
rosa_wichuraiana	Rw3G020030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	125
AccII	CGCG	1 cut(s)	66
AciI	CCGC	3 cut(s)	21, 64, 191
AcuI	CTGAAG	1 cut(s)	142
AcyI	GRCGYC	1 cut(s)	126
AgsI	TTSAA	3 cut(s)	112, 118, 279
ApeKI	GCWGC	2 cut(s)	75, 250
AspLEI	GCGC	1 cut(s)	128
AsuHPI	GGTGA	1 cut(s)	238
BanI	GGYRCC	1 cut(s)	125
BbsI	GAAGAC	2 cut(s)	11, 148
BbvI	GCAGC	2 cut(s)	87, 237
BceAI	ACGGC	1 cut(s)	113
BclI	TGATCA	1 cut(s)	306
BfoI	RGCGCY	1 cut(s)	129
BisI	GCNGC	2 cut(s)	76, 251
BlsI	GCNGC	2 cut(s)	77, 252
BmiI	GGNNCC	1 cut(s)	127
BmsI	GCATC	1 cut(s)	253
BpiI	GAAGAC	2 cut(s)	11, 148
BpuEI	CTTGAG	1 cut(s)	65
BsaHI	GRCGYC	1 cut(s)	126
BsaXI	ACNNNNNCTCC	1 cut(s)	32
BseGI	GGATG	1 cut(s)	268
BseXI	GCAGC	2 cut(s)	87, 237
Bsh1236I	CGCG	1 cut(s)	66
Bsh1285I	CGRYCG	1 cut(s)	64
BshNI	GGYRCC	1 cut(s)	125
BsiEI	CGRYCG	1 cut(s)	64
BsiSI	CCGG	1 cut(s)	123
Bsp143I	GATC	2 cut(s)	57, 306
BspACI	CCGC	3 cut(s)	21, 64, 191
BspFNI	CGCG	1 cut(s)	66
BspLI	GGNNCC	1 cut(s)	127
BspQI	GCTCTTC	1 cut(s)	113
BspT107I	GGYRCC	1 cut(s)	125
BssMI	GATC	2 cut(s)	57, 306
BssNI	GRCGYC	1 cut(s)	126
Bst4CI	ACNGT	1 cut(s)	275
Bst6I	CTCTTC	2 cut(s)	113, 152
BstACI	GRCGYC	1 cut(s)	126
BstF5I	GGATG	1 cut(s)	268
BstFNI	CGCG	1 cut(s)	66
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	2 cut(s)	60, 309
BstMBI	GATC	2 cut(s)	57, 306
BstMCI	CGRYCG	1 cut(s)	64
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 134
BstUI	CGCG	1 cut(s)	66
BstV1I	GCAGC	2 cut(s)	87, 237
BstV2I	GAAGAC	2 cut(s)	11, 148
BtsCI	GGATG	1 cut(s)	268
CfoI	GCGC	1 cut(s)	128
CviJI	RGCY	7 cut(s)	78, 93, 137, 214, 240, 250, 342
CviKI_1	RGCY	7 cut(s)	78, 93, 137, 214, 240, 250, 342
DinI	GGCGCC	1 cut(s)	127
DpnI	GATC	2 cut(s)	59, 308
DpnII	GATC	2 cut(s)	57, 306
Eam1104I	CTCTTC	2 cut(s)	113, 152
EarI	CTCTTC	2 cut(s)	113, 152
EciI	GGCGGA	1 cut(s)	10
Eco57I	CTGAAG	1 cut(s)	142
EgeI	GGCGCC	1 cut(s)	127
EheI	GGCGCC	1 cut(s)	127
FbaI	TGATCA	1 cut(s)	306
Fnu4HI	GCNGC	2 cut(s)	76, 251
FokI	GGATG	1 cut(s)	275
Fsp4HI	GCNGC	2 cut(s)	76, 251
GlaI	GCGC	1 cut(s)	127
GluI	GCNGC	2 cut(s)	76, 251
HaeII	RGCGCY	1 cut(s)	129
HapII	CCGG	1 cut(s)	123
HhaI	GCGC	1 cut(s)	128
Hin1I	GRCGYC	1 cut(s)	126
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HinfI	GANTC	1 cut(s)	86
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	1 cut(s)	238
Hpy188I	TCNGA	2 cut(s)	161, 318
Hpy99I	CGWCG	2 cut(s)	134, 155
HpyAV	CCTTC	1 cut(s)	181
HpyCH4III	ACNGT	1 cut(s)	275
HpyCH4V	TGCA	2 cut(s)	253, 328
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 134
Hsp92I	GRCGYC	1 cut(s)	126
HspAI	GCGC	1 cut(s)	126
KasI	GGCGCC	1 cut(s)	125
Ksp22I	TGATCA	1 cut(s)	306
Kzo9I	GATC	2 cut(s)	57, 306
LguI	GCTCTTC	1 cut(s)	113
LpnPI	CCDG	2 cut(s)	136, 220
Lsp1109I	GCAGC	2 cut(s)	87, 237
LweI	GCATC	1 cut(s)	253
MaeIII	GTNAC	1 cut(s)	201
MalI	GATC	2 cut(s)	59, 308
MboI	GATC	2 cut(s)	57, 306
MboII	GAAGA	6 cut(s)	16, 67, 100, 139, 148, 244
MluCI	AATT	3 cut(s)	30, 97, 322
Mly113I	GGCGCC	1 cut(s)	126
MnlI	CCTC	7 cut(s)	28, 89, 149, 155, 175, 239, 253
MseI	TTAA	1 cut(s)	168
MspI	CCGG	1 cut(s)	123
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	2 cut(s)	72, 134
NarI	GGCGCC	1 cut(s)	126
NdeII	GATC	2 cut(s)	57, 306
NlaIV	GGNNCC	1 cut(s)	127
PciSI	GCTCTTC	1 cut(s)	113
PcsI	WCGNNNNNNNCGW	2 cut(s)	138, 147
PfeI	GAWTC	1 cut(s)	86
PkrI	GCNGC	2 cut(s)	77, 252
PluTI	GGCGCC	1 cut(s)	129
PspN4I	GGNNCC	1 cut(s)	127
SapI	GCTCTTC	1 cut(s)	113
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	2 cut(s)	76, 251
Sau3AI	GATC	2 cut(s)	57, 306
SetI	ASST	2 cut(s)	20, 224
SfaNI	GCATC	1 cut(s)	253
SfoI	GGCGCC	1 cut(s)	127
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	3 cut(s)	30, 97, 322
SsiI	CCGC	3 cut(s)	21, 64, 191
SspDI	GGCGCC	1 cut(s)	125
TaaI	ACNGT	1 cut(s)	275
TaqI	TCGA	2 cut(s)	60, 180
TasI	AATT	3 cut(s)	30, 97, 322
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TseI	GCWGC	2 cut(s)	75, 250
TspDTI	ATGAA	2 cut(s)	17, 245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.