Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0014159

Physical Location & Seq

Genomic Coordinates Forward (+)

3660508 .. 3660804

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1019800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGAAAAAAAACCAAAAACCTGAACCTGCAAAGGAGATCGATCGCGTTGAGAGCAACCTTAAGGAATCCAACCACGATTTGTCACTTTTCAAGTTCAAGTCCGGCGCCGTCGTCACCCTCGTCCTCTTCGTCATCTTCGGATTGCTCAACTCGTTGTTCGAGGGGAAGACAGTGGCGAAATTACCCTTTAAGCCCTTTGGGTTGGAGATGAAGATGAGCCACAATGGGCTGCAATGGGAGGATGTGACGGACTGTTCAATGGCAGTTTCGTATTTTCTGTGCTCAATCAATATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0006950 GO:0006983 GO:0006984 GO:0007154 GO:0007165 GO:0008150 GO:0008324 GO:0009607 GO:0009987 GO:0012505 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0019725 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0030003 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032469 GO:0033554 GO:0034220 GO:0034976 GO:0042175 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071216 GO:0072503 GO:0072507 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF106

Protein Analysis

99

Amino Acids

11.07

Weight (kDa)

7.77

Isoelectric Point (pI)

34.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMC3_TMCO1	PF01956	2 - 96	1.6e-19	Integral membrane protein EMC3/TMCO1-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12030 AT5G06660
fragaria_vesca	FvH4_6g21840
malus_domestica	MD00G1019800.v1.1 MD12G1054500.v1.1 MD14G1053500.v1.1
prunus_persica	Prupe.7G082200_v2.0.a1
pyrus_communis	pycom11g10000 pycom12g04750
rosa_chinensis	RchiOBHm_Chr3g0479191
rosa_laevigata	RLG00000023597
rosa_multiflora	Rmu_sc0002978.1_g000022 Rmu_sc0015470.1_g000009
rosa_roxburghii	Rroxscaffold_6G00402570
rosa_rugosa	Rorug03G0172000
rosa_samantha	Rh3CG252000
rosa_wichuraiana	Rw3G020030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	34
AccB1I	GGYRCC	1 cut(s)	104
AccII	CGCG	1 cut(s)	45
AcyI	GRCGYC	1 cut(s)	105
AflII	CTTAAG	1 cut(s)	59
AgsI	TTSAA	3 cut(s)	91, 97, 258
Alw21I	GWGCWC	1 cut(s)	284
ApeKI	GCWGC	1 cut(s)	229
AspLEI	GCGC	1 cut(s)	107
AsuHPI	GGTGA	1 cut(s)	106
BanI	GGYRCC	1 cut(s)	104
BbsI	GAAGAC	1 cut(s)	173
Bbv12I	GWGCWC	1 cut(s)	284
BbvI	GCAGC	1 cut(s)	216
BceAI	ACGGC	1 cut(s)	92
BfoI	RGCGCY	1 cut(s)	108
BfrI	CTTAAG	1 cut(s)	59
BfuAI	ACCTGC	1 cut(s)	34
BisI	GCNGC	1 cut(s)	230
BlsI	GCNGC	1 cut(s)	231
BmiI	GGNNCC	1 cut(s)	106
BpiI	GAAGAC	1 cut(s)	173
Bsa29I	ATCGAT	1 cut(s)	39
BsaHI	GRCGYC	1 cut(s)	105
Bse3DI	GCAATG	1 cut(s)	239
BseCI	ATCGAT	1 cut(s)	39
BseGI	GGATG	1 cut(s)	247
BseMI	GCAATG	1 cut(s)	239
BseXI	GCAGC	1 cut(s)	216
Bsh1236I	CGCG	1 cut(s)	45
Bsh1285I	CGRYCG	1 cut(s)	43
BshNI	GGYRCC	1 cut(s)	104
BshVI	ATCGAT	1 cut(s)	39
BsiEI	CGRYCG	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	284
BsiSI	CCGG	1 cut(s)	102
Bsp1286I	GDGCHC	1 cut(s)	284
Bsp143I	GATC	2 cut(s)	36, 40
BspDI	ATCGAT	1 cut(s)	39
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	106
BspMI	ACCTGC	1 cut(s)	34
BspT107I	GGYRCC	1 cut(s)	104
BspTI	CTTAAG	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	239
BssMI	GATC	2 cut(s)	36, 40
BssNI	GRCGYC	1 cut(s)	105
Bst4CI	ACNGT	2 cut(s)	172, 254
Bst6I	CTCTTC	1 cut(s)	131
BstACI	GRCGYC	1 cut(s)	105
BstAFI	CTTAAG	1 cut(s)	59
BstF5I	GGATG	1 cut(s)	247
BstFNI	CGCG	1 cut(s)	45
BstH2I	RGCGCY	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	2 cut(s)	39, 43
BstMBI	GATC	2 cut(s)	36, 40
BstMCI	CGRYCG	1 cut(s)	43
BstMWI	GCNNNNNNNGC	1 cut(s)	51
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	1 cut(s)	216
BstV2I	GAAGAC	1 cut(s)	173
Bsu15I	ATCGAT	1 cut(s)	39
BsuTUI	ATCGAT	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	247
BtsIMutI	CAGTG	1 cut(s)	177
BveI	ACCTGC	1 cut(s)	34
CfoI	GCGC	1 cut(s)	107
ClaI	ATCGAT	1 cut(s)	39
CviJI	RGCY	3 cut(s)	193, 219, 229
CviKI_1	RGCY	3 cut(s)	193, 219, 229
DinI	GGCGCC	1 cut(s)	106
DpnI	GATC	2 cut(s)	38, 42
DpnII	GATC	2 cut(s)	36, 40
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
EgeI	GGCGCC	1 cut(s)	106
EheI	GGCGCC	1 cut(s)	106
Fnu4HI	GCNGC	1 cut(s)	230
FokI	GGATG	1 cut(s)	254
Fsp4HI	GCNGC	1 cut(s)	230
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	1 cut(s)	230
HaeII	RGCGCY	1 cut(s)	108
HapII	CCGG	1 cut(s)	102
HhaI	GCGC	1 cut(s)	107
Hin1I	GRCGYC	1 cut(s)	105
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HinfI	GANTC	1 cut(s)	65
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	1 cut(s)	106
Hpy188I	TCNGA	1 cut(s)	140
Hpy99I	CGWCG	1 cut(s)	113
HpyCH4III	ACNGT	2 cut(s)	172, 254
HpyCH4V	TGCA	2 cut(s)	29, 232
HpyF10VI	GCNNNNNNNGC	1 cut(s)	51
Hsp92I	GRCGYC	1 cut(s)	105
HspAI	GCGC	1 cut(s)	105
KasI	GGCGCC	1 cut(s)	104
Kzo9I	GATC	2 cut(s)	36, 40
LpnPI	CCDG	3 cut(s)	33, 39, 115
Lsp1109I	GCAGC	1 cut(s)	216
MaeIII	GTNAC	3 cut(s)	81, 112, 244
MalI	GATC	2 cut(s)	38, 42
MboI	GATC	2 cut(s)	36, 40
MboII	GAAGA	4 cut(s)	118, 127, 178, 223
MhlI	GDGCHC	1 cut(s)	284
MluCI	AATT	1 cut(s)	179
Mly113I	GGCGCC	1 cut(s)	105
MmeI	TCCRAC	2 cut(s)	93, 183
MnlI	CCTC	4 cut(s)	128, 134, 154, 232
MseI	TTAA	2 cut(s)	60, 189
MspCI	CTTAAG	1 cut(s)	59
MspI	CCGG	1 cut(s)	102
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	1 cut(s)	51
NarI	GGCGCC	1 cut(s)	105
NdeII	GATC	2 cut(s)	36, 40
NlaIV	GGNNCC	1 cut(s)	106
NmuCI	GTSAC	3 cut(s)	81, 112, 244
PcsI	WCGNNNNNNNCGW	2 cut(s)	117, 126
PfeI	GAWTC	1 cut(s)	65
PkrI	GCNGC	1 cut(s)	231
Ple19I	CGATCG	1 cut(s)	43
PluTI	GGCGCC	1 cut(s)	108
PspN4I	GGNNCC	1 cut(s)	106
PvuI	CGATCG	1 cut(s)	43
SaqAI	TTAA	2 cut(s)	60, 189
SatI	GCNGC	1 cut(s)	230
Sau3AI	GATC	2 cut(s)	36, 40
SduI	GDGCHC	1 cut(s)	284
SetI	ASST	3 cut(s)	22, 28, 60
SfoI	GGCGCC	1 cut(s)	106
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	1 cut(s)	179
SspDI	GGCGCC	1 cut(s)	104
SspI	AATATT	1 cut(s)	292
TaaI	ACNGT	2 cut(s)	172, 254
TaqI	TCGA	2 cut(s)	39, 159
TasI	AATT	1 cut(s)	179
TfiI	GAWTC	1 cut(s)	65
Tru1I	TTAA	2 cut(s)	60, 189
Tru9I	TTAA	2 cut(s)	60, 189
TscAI	CASTG	1 cut(s)	177
TseFI	GTSAC	3 cut(s)	81, 112, 244
TseI	GCWGC	1 cut(s)	229
Tsp45I	GTSAC	3 cut(s)	81, 112, 244
TspDTI	ATGAA	2 cut(s)	17, 224
TspGWI	ACGGA	1 cut(s)	263
TspRI	CASTG	1 cut(s)	177
Vha464I	CTTAAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.