Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0014159

Physical Location & Seq

Genomic Coordinates Forward (+)

8379469 .. 8379873

Gene Structure 405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g10000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGAAGACCGACTCCTCCTCCGCCGCCAAAATTACCAAAATGTCCAAGACCAAGAAGATCGACCGCGTCGAGAGCAGCCTCAAGGAATCCAGCTGCGATTTGTCGCTCTTCAAGTTCAAGTCCGGCACCGTCGTTGCCCTCGTCCTCTTCGTCGTCTTCGGACTGCTTAACTCGCTGTTCGAGGGGAAGGCGGTGGCGAAATTACCCTTCAAGCCCTTTGGGTTGGTGATGAAGATGAGCCACAGAGGGCTGCAAGGGGAGGATGCGACAGACTGTTCAATGGTGTTTTTGTACTTTCTGTGCTCGATCAGTATTCGGACCAATTTGCAGAAGTTCTTGGGCGTTTCGCGGTCGAGAAGCACCAGTTCCGGGTTGTTCCCCATACCGGACCCGAAAACCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0006950 GO:0006983 GO:0006984 GO:0007154 GO:0007165 GO:0008150 GO:0008324 GO:0009607 GO:0009987 GO:0012505 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0019725 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0030003 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032469 GO:0033554 GO:0034220 GO:0034976 GO:0042175 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071216 GO:0072503 GO:0072507 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF106

Protein Analysis

135

Amino Acids

14.7

Weight (kDa)

9.82

Isoelectric Point (pI)

45.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMC3_TMCO1	PF01956	8 - 115	1.9e-24	Integral membrane protein EMC3/TMCO1-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12030 AT5G06660
fragaria_vesca	FvH4_6g21840
malus_domestica	MD00G1019800.v1.1 MD12G1054500.v1.1 MD14G1053500.v1.1
prunus_persica	Prupe.7G082200_v2.0.a1
pyrus_communis	pycom11g10000 pycom12g04750
rosa_chinensis	RchiOBHm_Chr3g0479191
rosa_laevigata	RLG00000023597
rosa_multiflora	Rmu_sc0002978.1_g000022 Rmu_sc0015470.1_g000009
rosa_roxburghii	Rroxscaffold_6G00402570
rosa_rugosa	Rorug03G0172000
rosa_samantha	Rh3CG252000
rosa_wichuraiana	Rw3G020030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	125
AccII	CGCG	2 cut(s)	66, 349
AciI	CCGC	5 cut(s)	21, 24, 64, 191, 349
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	2 cut(s)	369, 385
AgsI	TTSAA	4 cut(s)	112, 118, 211, 279
AluBI	AGCT	1 cut(s)	93
AluI	AGCT	1 cut(s)	93
Alw21I	GWGCWC	1 cut(s)	305
ApeKI	GCWGC	3 cut(s)	75, 93, 250
AspS9I	GGNCC	2 cut(s)	318, 388
AsuC2I	CCSGG	1 cut(s)	370
AsuHPI	GGTGA	1 cut(s)	238
AvaII	GGWCC	2 cut(s)	318, 388
BanI	GGYRCC	1 cut(s)	125
BbsI	GAAGAC	2 cut(s)	11, 148
Bbv12I	GWGCWC	1 cut(s)	305
BbvI	GCAGC	3 cut(s)	80, 87, 237
BcnI	CCSGG	1 cut(s)	370
BisI	GCNGC	4 cut(s)	24, 76, 94, 251
BlsI	GCNGC	4 cut(s)	25, 77, 95, 252
Bme1390I	CCNGG	1 cut(s)	370
Bme18I	GGWCC	2 cut(s)	318, 388
BmgT120I	GGNCC	2 cut(s)	318, 388
BmiI	GGNNCC	2 cut(s)	127, 390
BmrFI	CCNGG	1 cut(s)	370
BmsI	GCATC	1 cut(s)	253
BpiI	GAAGAC	2 cut(s)	11, 148
BpuEI	CTTGAG	1 cut(s)	65
BpuMI	CCSGG	1 cut(s)	370
BsaWI	WCCGGW	1 cut(s)	385
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	2 cut(s)	369, 385
Bse1I	ACTGG	1 cut(s)	363
BseGI	GGATG	1 cut(s)	268
BseLI	CCNNNNNNNGG	2 cut(s)	369, 385
BseNI	ACTGG	1 cut(s)	363
BseRI	GAGGAG	2 cut(s)	4, 7
BseXI	GCAGC	3 cut(s)	80, 87, 237
Bsh1236I	CGCG	2 cut(s)	66, 349
Bsh1285I	CGRYCG	2 cut(s)	64, 353
BshNI	GGYRCC	1 cut(s)	125
BsiEI	CGRYCG	2 cut(s)	64, 353
BsiHKAI	GWGCWC	1 cut(s)	305
BsiSI	CCGG	3 cut(s)	123, 369, 386
BslI	CCNNNNNNNGG	2 cut(s)	369, 385
Bsp1286I	GDGCHC	1 cut(s)	305
Bsp143I	GATC	2 cut(s)	57, 306
BspACI	CCGC	5 cut(s)	21, 24, 64, 191, 349
BspFNI	CGCG	2 cut(s)	66, 349
BspLI	GGNNCC	2 cut(s)	127, 390
BspQI	GCTCTTC	1 cut(s)	113
BspT107I	GGYRCC	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	363
BssMI	GATC	2 cut(s)	57, 306
Bst4CI	ACNGT	2 cut(s)	130, 275
Bst6I	CTCTTC	2 cut(s)	113, 152
BstF5I	GGATG	1 cut(s)	268
BstFNI	CGCG	2 cut(s)	66, 349
BstKTI	GATC	2 cut(s)	60, 309
BstMBI	GATC	2 cut(s)	57, 306
BstMCI	CGRYCG	2 cut(s)	64, 353
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 172
BstSCI	CCNGG	1 cut(s)	368
BstUI	CGCG	2 cut(s)	66, 349
BstV1I	GCAGC	3 cut(s)	80, 87, 237
BstV2I	GAAGAC	2 cut(s)	11, 148
BtsCI	GGATG	1 cut(s)	268
Cfr13I	GGNCC	2 cut(s)	318, 388
CseI	GACGC	1 cut(s)	55
Csp6I	GTAC	1 cut(s)	292
CviJI	RGCY	5 cut(s)	78, 93, 214, 240, 250
CviKI_1	RGCY	5 cut(s)	78, 93, 214, 240, 250
CviQI	GTAC	1 cut(s)	292
DpnI	GATC	2 cut(s)	59, 308
DpnII	GATC	2 cut(s)	57, 306
Eam1104I	CTCTTC	2 cut(s)	113, 152
EarI	CTCTTC	2 cut(s)	113, 152
EciI	GGCGGA	1 cut(s)	10
Eco47I	GGWCC	2 cut(s)	318, 388
FaiI	YATR	1 cut(s)	383
Fnu4HI	GCNGC	4 cut(s)	24, 76, 94, 251
FokI	GGATG	1 cut(s)	275
Fsp4HI	GCNGC	4 cut(s)	24, 76, 94, 251
GluI	GCNGC	4 cut(s)	24, 76, 94, 251
HapII	CCGG	3 cut(s)	123, 369, 386
HgaI	GACGC	1 cut(s)	55
HinfI	GANTC	2 cut(s)	11, 86
HpaII	CCGG	3 cut(s)	123, 369, 386
HphI	GGTGA	1 cut(s)	238
Hpy188I	TCNGA	2 cut(s)	161, 318
Hpy188III	TCNNGA	2 cut(s)	70, 354
Hpy99I	CGWCG	3 cut(s)	71, 134, 155
HpyAV	CCTTC	2 cut(s)	181, 217
HpyCH4III	ACNGT	2 cut(s)	130, 275
HpyCH4V	TGCA	2 cut(s)	253, 328
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 172
Kzo9I	GATC	2 cut(s)	57, 306
LguI	GCTCTTC	1 cut(s)	113
LpnPI	CCDG	5 cut(s)	103, 136, 376, 382, 399
Lsp1109I	GCAGC	3 cut(s)	80, 87, 237
LweI	GCATC	1 cut(s)	253
MalI	GATC	2 cut(s)	59, 308
MboI	GATC	2 cut(s)	57, 306
MboII	GAAGA	6 cut(s)	16, 67, 100, 139, 148, 244
MfeI	CAATTG	1 cut(s)	400
MhlI	GDGCHC	1 cut(s)	305
MluCI	AATT	4 cut(s)	30, 200, 322, 400
MlyI	GAGTC	1 cut(s)	5
MnlI	CCTC	8 cut(s)	25, 28, 89, 149, 155, 175, 239, 253
MseI	TTAA	1 cut(s)	168
MspA1I	CMGCKG	1 cut(s)	93
MspI	CCGG	3 cut(s)	123, 369, 386
MspR9I	CCNGG	1 cut(s)	370
MunI	CAATTG	1 cut(s)	400
MvnI	CGCG	2 cut(s)	66, 349
MwoI	GCNNNNNNNGC	2 cut(s)	72, 172
NciI	CCSGG	1 cut(s)	370
NdeII	GATC	2 cut(s)	57, 306
NlaIV	GGNNCC	2 cut(s)	127, 390
PciSI	GCTCTTC	1 cut(s)	113
PcsI	WCGNNNNNNNCGW	3 cut(s)	66, 138, 147
PfeI	GAWTC	1 cut(s)	86
PflFI	GACNNNGTC	1 cut(s)	65
PkrI	GCNGC	4 cut(s)	25, 77, 95, 252
PleI	GAGTC	1 cut(s)	5
PpsI	GAGTC	1 cut(s)	5
PspN4I	GGNNCC	2 cut(s)	127, 390
PspPI	GGNCC	2 cut(s)	318, 388
PsyI	GACNNNGTC	1 cut(s)	65
PvuII	CAGCTG	1 cut(s)	93
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
SapI	GCTCTTC	1 cut(s)	113
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	4 cut(s)	24, 76, 94, 251
Sau3AI	GATC	2 cut(s)	57, 306
Sau96I	GGNCC	2 cut(s)	318, 388
SchI	GAGTC	1 cut(s)	5
ScrFI	CCNGG	1 cut(s)	370
SduI	GDGCHC	1 cut(s)	305
SetI	ASST	1 cut(s)	95
SfaNI	GCATC	1 cut(s)	253
SinI	GGWCC	2 cut(s)	318, 388
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	4 cut(s)	30, 200, 322, 400
SsiI	CCGC	5 cut(s)	21, 24, 64, 191, 349
StyD4I	CCNGG	1 cut(s)	368
TaaI	ACNGT	2 cut(s)	130, 275
TaqI	TCGA	5 cut(s)	60, 69, 180, 305, 353
TaqII	GACCGA	1 cut(s)	23
TasI	AATT	4 cut(s)	30, 200, 322, 400
TatI	WGTACW	1 cut(s)	291
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TseI	GCWGC	3 cut(s)	75, 93, 250
TspDTI	ATGAA	2 cut(s)	17, 245
Tth111I	GACNNNGTC	1 cut(s)	65
VpaK11BI	GGWCC	2 cut(s)	318, 388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.