Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014159

Physical Location & Seq

Genomic Coordinates Forward (+)

2046785 .. 2047961

Gene Structure 1177 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G06660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGCCACCGCGATACCTCTCTTCGCCTCTTTCAAGTATGCCGATAGTCTCACCGTCGTTGGAATCTCTTTCTGCACGGCGTTGGTCTGCGAAGCAATCTCATGGATCCTAATCTATCGCACAAGCTCTTACAAATCGTTGAAATCTTCCATTGACAAAGCCTCTAAGAAGCTTGAGACGATGAAGACAGATAATCCTTCCTCGAAGCTAACAAACAAGAAATCGAAGACGAAGAAGATAGATCGCGTTGAATCCAGCTTAAAGGAATCGAGCAGAGATCTATCACTCTTCAAGTTTAAATCTGGTGCCGTTGTGGCTTTGGTTCTCTTTGTCGTGTTTGGATTGTTGAATTCGCTTTTCGAAGGGAAAGTGGTAGCGAAGCTTCCGTTTCATCCGATTACGATTGTGAGGAAGATGAGTCATAGAGGATTGAAAGGCGATGATTCCACTGATTGTTCCATGGCTTTTCTTTATCTGCTTTGTTCTATTAGTATAAGGACTAATCTGCAGAAGTTCTTGGGTTTCTCTCCACCTAGAGGAGCTGCTGGTGCTGGTGGTTTGTTCCCAATGCCTGATCCAAAGACCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0006950 GO:0006983 GO:0006984 GO:0007154 GO:0007165 GO:0008150 GO:0008324 GO:0009607 GO:0009987 GO:0012505 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0019725 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0030003 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032469 GO:0033554 GO:0034220 GO:0034976 GO:0042175 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071216 GO:0072503 GO:0072507 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF106

Protein Analysis

196

Amino Acids

21.42

Weight (kDa)

9.83

Isoelectric Point (pI)

25.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMC3_TMCO1	PF01956	17 - 176	6.4e-33	Integral membrane protein EMC3/TMCO1-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0014159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12030 AT5G06660
fragaria_vesca	FvH4_6g21840
malus_domestica	MD00G1019800.v1.1 MD12G1054500.v1.1 MD14G1053500.v1.1
prunus_persica	Prupe.7G082200_v2.0.a1
pyrus_communis	pycom11g10000 pycom12g04750
rosa_chinensis	RchiOBHm_Chr3g0479191
rosa_laevigata	RLG00000023597
rosa_multiflora	Rmu_sc0002978.1_g000022 Rmu_sc0015470.1_g000009
rosa_roxburghii	Rroxscaffold_6G00402570
rosa_rugosa	Rorug03G0172000
rosa_samantha	Rh3CG252000
rosa_wichuraiana	Rw3G020030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	305
AccII	CGCG	2 cut(s)	11, 246
AciI	CCGC	1 cut(s)	9
AclWI	GGATC	3 cut(s)	100, 113, 569
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	349
AfiI	CCNNNNNNNGG	1 cut(s)	536
AgsI	TTSAA	6 cut(s)	34, 142, 251, 292, 349, 433
AluBI	AGCT	6 cut(s)	126, 172, 208, 258, 382, 542
AluI	AGCT	6 cut(s)	126, 172, 208, 258, 382, 542
Alw26I	GTCTC	2 cut(s)	53, 170
AlwI	GGATC	3 cut(s)	100, 113, 569
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	542
ApoI	RAATTY	1 cut(s)	349
AsuHPI	GGTGA	1 cut(s)	43
AsuII	TTCGAA	1 cut(s)	360
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	105
BanI	GGYRCC	1 cut(s)	305
BarI	GAAGNNNNNNTAC	2 cut(s)	366, 398
BbsI	GAAGAC	2 cut(s)	191, 233
BbvI	GCAGC	1 cut(s)	529
BceAI	ACGGC	2 cut(s)	93, 293
BcoDI	GTCTC	2 cut(s)	53, 170
BfaI	CTAG	1 cut(s)	534
BfmI	CTRYAG	1 cut(s)	506
BglI	GCCNNNNNGGC	1 cut(s)	314
BglII	AGATCT	1 cut(s)	277
BisI	GCNGC	1 cut(s)	543
BlsI	GCNGC	1 cut(s)	544
BmiI	GGNNCC	2 cut(s)	107, 307
BpiI	GAAGAC	2 cut(s)	191, 233
Bpu14I	TTCGAA	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	194
BsaBI	GATNNNNATC	1 cut(s)	110
BsaJI	CCNNGG	1 cut(s)	459
Bsc4I	CCNNNNNNNGG	1 cut(s)	536
Bse8I	GATNNNNATC	1 cut(s)	110
BseDI	CCNNGG	1 cut(s)	459
BseGI	GGATG	1 cut(s)	391
BseJI	GATNNNNATC	1 cut(s)	110
BseLI	CCNNNNNNNGG	1 cut(s)	536
BseRI	GAGGAG	1 cut(s)	552
BseXI	GCAGC	1 cut(s)	529
BsgI	GTGCAG	1 cut(s)	58
Bsh1236I	CGCG	2 cut(s)	11, 246
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	305
BslI	CCNNNNNNNGG	1 cut(s)	536
BsmAI	GTCTC	2 cut(s)	53, 170
BsmBI	CGTCTC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	360
Bsp143I	GATC	4 cut(s)	105, 241, 277, 574
Bsp19I	CCATGG	1 cut(s)	459
BspACI	CCGC	1 cut(s)	9
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	2 cut(s)	11, 246
BspLI	GGNNCC	2 cut(s)	107, 307
BspMAI	CTGCAG	1 cut(s)	510
BspPI	GGATC	3 cut(s)	100, 113, 569
BspT104I	TTCGAA	1 cut(s)	360
BspT107I	GGYRCC	1 cut(s)	305
BssECI	CCNNGG	1 cut(s)	459
BssMI	GATC	4 cut(s)	105, 241, 277, 574
BssT1I	CCWWGG	1 cut(s)	459
Bst4CI	ACNGT	1 cut(s)	55
Bst6I	CTCTTC	2 cut(s)	26, 293
BstBI	TTCGAA	1 cut(s)	360
BstDEI	CTNAG	1 cut(s)	165
BstDSI	CCRYGG	1 cut(s)	459
BstF5I	GGATG	1 cut(s)	391
BstFNI	CGCG	2 cut(s)	11, 246
BstKTI	GATC	4 cut(s)	108, 244, 280, 577
BstMAI	GTCTC	2 cut(s)	53, 170
BstMBI	GATC	4 cut(s)	105, 241, 277, 574
BstMWI	GCNNNNNNNGC	2 cut(s)	314, 548
BstSFI	CTRYAG	1 cut(s)	506
BstUI	CGCG	2 cut(s)	11, 246
BstV1I	GCAGC	1 cut(s)	529
BstV2I	GAAGAC	2 cut(s)	191, 233
BstX2I	RGATCY	2 cut(s)	105, 277
BstYI	RGATCY	2 cut(s)	105, 277
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	459
BtgZI	GCGATG	1 cut(s)	453
BtsCI	GGATG	1 cut(s)	391
BtsIMutI	CAGTG	1 cut(s)	447
CviAII	CATG	2 cut(s)	102, 460
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	4 cut(s)	107, 243, 279, 576
DpnII	GATC	4 cut(s)	105, 241, 277, 574
DraI	TTTAAA	1 cut(s)	298
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	26, 293
EarI	CTCTTC	2 cut(s)	26, 293
Eco130I	CCWWGG	1 cut(s)	459
EcoRI	GAATTC	1 cut(s)	349
EcoT14I	CCWWGG	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	459
Esp3I	CGTCTC	1 cut(s)	170
FaeI	CATG	2 cut(s)	105, 463
FaiI	YATR	5 cut(s)	39, 103, 423, 461, 494
FatI	CATG	2 cut(s)	101, 459
Fnu4HI	GCNGC	1 cut(s)	543
FokI	GGATG	1 cut(s)	378
Fsp4HI	GCNGC	1 cut(s)	543
FspBI	CTAG	1 cut(s)	534
GluI	GCNGC	1 cut(s)	543
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	105, 463
HindIII	AAGCTT	2 cut(s)	170, 380
HinfI	GANTC	5 cut(s)	63, 251, 266, 418, 443
HphI	GGTGA	1 cut(s)	43
Hpy188I	TCNGA	1 cut(s)	396
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	2 cut(s)	207, 356
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4V	TGCA	2 cut(s)	75, 508
HpyF10VI	GCNNNNNNNGC	2 cut(s)	314, 548
HpyF3I	CTNAG	1 cut(s)	165
Hsp92II	CATG	2 cut(s)	105, 463
Kzo9I	GATC	4 cut(s)	105, 241, 277, 574
LmnI	GCTCC	1 cut(s)	539
LpnPI	CCDG	5 cut(s)	268, 288, 531, 537, 585
Lsp1109I	GCAGC	1 cut(s)	529
MaeI	CTAG	1 cut(s)	534
MalI	GATC	4 cut(s)	107, 243, 279, 576
MboI	GATC	4 cut(s)	105, 241, 277, 574
MboII	GAAGA	8 cut(s)	13, 138, 196, 238, 244, 247, 280, 424
MfeI	CAATTG	1 cut(s)	586
MflI	RGATCY	2 cut(s)	105, 277
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	349, 586
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	427
MmeI	TCCRAC	1 cut(s)	40
MnlI	CCTC	7 cut(s)	27, 37, 172, 211, 402, 419, 530
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	260, 297
Msp20I	TGGCCA	1 cut(s)	5
MunI	CAATTG	1 cut(s)	586
MvnI	CGCG	2 cut(s)	11, 246
MwoI	GCNNNNNNNGC	2 cut(s)	314, 548
NcoI	CCATGG	1 cut(s)	459
NdeII	GATC	4 cut(s)	105, 241, 277, 574
NlaIII	CATG	2 cut(s)	105, 463
NlaIV	GGNNCC	2 cut(s)	107, 307
NspV	TTCGAA	1 cut(s)	360
PfeI	GAWTC	4 cut(s)	63, 251, 266, 443
PkrI	GCNGC	1 cut(s)	544
PleI	GAGTC	1 cut(s)	426
PpsI	GAGTC	1 cut(s)	426
PspN4I	GGNNCC	2 cut(s)	107, 307
PstI	CTGCAG	1 cut(s)	510
PsuI	RGATCY	2 cut(s)	105, 277
SaqAI	TTAA	2 cut(s)	260, 297
SatI	GCNGC	1 cut(s)	543
Sau3AI	GATC	4 cut(s)	105, 241, 277, 574
SchI	GAGTC	1 cut(s)	427
SetI	ASST	8 cut(s)	19, 128, 174, 210, 260, 384, 535, 544
SfcI	CTRYAG	1 cut(s)	506
SfuI	TTCGAA	1 cut(s)	360
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	2 cut(s)	349, 586
SsiI	CCGC	1 cut(s)	9
SspMI	CTAG	1 cut(s)	534
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	1 cut(s)	55
TaqI	TCGA	4 cut(s)	203, 224, 269, 360
TasI	AATT	2 cut(s)	349, 586
TfiI	GAWTC	4 cut(s)	63, 251, 266, 443
Tru1I	TTAA	2 cut(s)	260, 297
Tru9I	TTAA	2 cut(s)	260, 297
TscAI	CASTG	1 cut(s)	454
TseI	GCWGC	1 cut(s)	542
TspDTI	ATGAA	2 cut(s)	197, 380
TspGWI	ACGGA	1 cut(s)	375
TspRI	CASTG	1 cut(s)	454
XapI	RAATTY	1 cut(s)	349
XspI	CTAG	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.