Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001295

Physical Location & Seq

Genomic Coordinates Reverse (-)

14522966 .. 14526973

Gene Structure 4008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0172000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGAGGGCGGATTTTTTGAGACCCAGGTGACTGTTGGCAAGGAACATTCTTGTGTGGATGAACAGTGTGTCAGGGAGAAGGCATCTGGGGAATTTGGGTGCATGCATTACAGACGGAGATGCAAGATCAGAGCACCGTGTTGTGATGAGATTTTCGACTGCAGGCATTGCCATAACGAAGCCAAGAATGCTTTGGAAGTTGAACCAGTTGATCGCCATGATATTCCTCGCCATGATCTGAAAAGGGTCATCTGTTCATTGTGCAACACAGAACAGGATGTTCAACAGCACTGTAGCCAATGTGGGGTTTGCATGGGAAACTACTTTTGCCCCAAATGCAAGTTTTTTGATGATGACGTTTCGAAAAAGCAGTATCATTGTGACCAATGCGGTATCTGCAGAACTGGAGGTGCGGAGAACTTTTTCCACTGTGACAGATGTGGATGCTGTTACTCAACAGTGCTGAAGGATTCACACAATTGTGTGGAAAAAGCAATGCATCACAATTGCCCTGTGTGCTTTGAGTTTCTTTTTGATACGACAGCAGACATTACTGTCTTACCATGTGGGCACACTATACATTTGGAGTGTGTGAAAGAGATGGAGCGGCATTTTCAGTATTCTTGCCCAGTTTGCTCAAAATCGTACTGTGATATGTCACGTTTGTGGGAAAAACTGGACCAGGAGATTGATGCGACTCCAATGCCTCCGATGTATCAGAATAAGATGGTCTGGGTCCTCTGCAATGATTGTGGACAAACGTCAGAGGTAAATTTTCACATTGTGGCACTCAAATGCCTCAAATGCAAATCCTACAATACGAGGCAGACACAAAGAGGGCCAGCATCATGCTCATCAAGGGTTTCAGAGATGGCTGATAGTTTTCTGGAAGGTCCTTTGAACCTGAGATCACTTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0006950 GO:0006983 GO:0006984 GO:0007154 GO:0007165 GO:0008150 GO:0008324 GO:0009607 GO:0009987 GO:0012505 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0019725 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0030003 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032469 GO:0033554 GO:0034220 GO:0034976 GO:0042175 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071216 GO:0072503 GO:0072507 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF106

Protein Analysis

306

Amino Acids

35.16

Weight (kDa)

6.14

Isoelectric Point (pI)

53.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CHY	PF05495	34 - 108	6e-18	CHY zinc finger
zf-RING_2	PF13639	169 - 212	2e-07	Ring finger domain
zf-RING_5	PF14634	169 - 214	1.7e-06	zinc-RING finger domain
zf-RING_UBOX	PF13445	170 - 210	1.8e-07	RING-type zinc-finger
zinc_ribbon_6	PF14599	217 - 275	2.9e-27	Zinc-ribbon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001295)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12051 FvH4_5g32781 FvH4_6g21652
prunus_persica	Prupe.1G235700_v2.0.a1 Prupe.2G131400_v2.0.a1 Prupe.2G131500_v2.0.a1 Prupe.2G131600_v2.0.a1 Prupe.8G072300_v2.0.a1 Prupe.8G072400_v2.0.a1
rosa_laevigata	RLG00000023594 RLG00000023595 RLG00000023596
rosa_multiflora	Rmu_sc0000382.1_g000036 Rmu_sc0000382.1_g000038 Rmu_sc0002978.1_g000014 Rmu_sc0002978.1_g000017 Rmu_sc0002978.1_g000018 Rmu_sc0002978.1_g000021 Rmu_sc0015470.1_g000003 Rmu_sc0015470.1_g000005 Rmu_sc0015470.1_g000006 Rmu_sc0015470.1_g000008
rosa_roxburghii	Rroxscaffold_1G00044700 Rroxscaffold_6G00402540 Rroxscaffold_6G00402550 Rroxscaffold_6G00402560
rosa_rugosa	Rorug03G0172000 Rorug03G0172100 Rorug03G0172200.1 Rorug03G0172500 Rorug05G0152100 Rorug05G0152300
rosa_samantha	Rh1BG192300 Rh1DG220700 Rh3AG223400 Rh3AG223500 Rh3AG223800 Rh3BG256100 Rh3BG256200 Rh3BG256300 Rh3BG256600 Rh3CG252100 Rh3CG252200 Rh3CG252300 Rh3CG252400 Rh3DG248300 Rh3DG248400 Rh3DG248500 Rh3DG248600 Rh5BG246800 Rh5CG277900 Rh5DG255400
rosa_wichuraiana	Rw3G020040 Rw3G020050 Rw3G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	554
AccBSI	CCGCTC	1 cut(s)	607
AciI	CCGC	4 cut(s)	9, 390, 413, 607
AcsI	RAATTY	2 cut(s)	92, 772
AcuI	CTGAAG	1 cut(s)	485
AdeI	CACNNNGTG	1 cut(s)	784
AfaI	GTAC	1 cut(s)	647
AfiI	CCNNNNNNNGG	1 cut(s)	304
AgsI	TTSAA	3 cut(s)	203, 284, 901
AjnI	CCWGG	2 cut(s)	24, 681
AleI	CACNNNNGTG	2 cut(s)	480, 664
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	1 cut(s)	14
AoxI	GGCC	1 cut(s)	839
ApoI	RAATTY	2 cut(s)	92, 772
Asp700I	GAANNNNTTC	1 cut(s)	422
AspS9I	GGNCC	4 cut(s)	679, 736, 839, 893
AsuHPI	GGTGA	1 cut(s)	40
AsuII	TTCGAA	1 cut(s)	362
AvaII	GGWCC	3 cut(s)	679, 736, 893
BaeGI	GKGCMC	1 cut(s)	573
Bbv12I	GWGCWC	1 cut(s)	136
BccI	CCATC	3 cut(s)	595, 721, 865
BcgI	CGANNNNNNTGC	2 cut(s)	685, 719
BciT130I	CCWGG	2 cut(s)	26, 683
BcoDI	GTCTC	1 cut(s)	14
BfmI	CTRYAG	3 cut(s)	160, 292, 397
BisI	GCNGC	1 cut(s)	608
BlsI	GCNGC	1 cut(s)	609
Bme1390I	CCNGG	2 cut(s)	26, 683
Bme18I	GGWCC	3 cut(s)	679, 736, 893
BmgT120I	GGNCC	4 cut(s)	679, 736, 839, 893
BmiI	GGNNCC	1 cut(s)	737
BmrFI	CCNGG	2 cut(s)	26, 683
BmrI	ACTGGG	1 cut(s)	623
BmsI	GCATC	6 cut(s)	92, 110, 434, 508, 682, 854
BmuI	ACTGGG	1 cut(s)	623
BoxI	GACNNNNGTC	1 cut(s)	760
BpmI	CTGGAG	1 cut(s)	426
Bpu14I	TTCGAA	1 cut(s)	362
BsaI	GGTCTC	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
Bse1I	ACTGG	4 cut(s)	206, 409, 629, 681
Bse3DI	GCAATG	3 cut(s)	166, 501, 751
BseBI	CCWGG	2 cut(s)	26, 683
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	3 cut(s)	64, 283, 449
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseMI	GCAATG	3 cut(s)	166, 501, 751
BseMII	CTCAG	1 cut(s)	896
BseNI	ACTGG	4 cut(s)	206, 409, 629, 681
BseSI	GKGCMC	1 cut(s)	573
BshFI	GGCC	1 cut(s)	841
BsiHKAI	GWGCWC	1 cut(s)	136
BslI	CCNNNNNNNGG	1 cut(s)	304
BsmAI	GTCTC	1 cut(s)	14
BsmI	GAATGC	1 cut(s)	193
BsnI	GGCC	1 cut(s)	841
Bso31I	GGTCTC	1 cut(s)	14
Bsp119I	TTCGAA	1 cut(s)	362
Bsp1286I	GDGCHC	2 cut(s)	136, 573
Bsp143I	GATC	4 cut(s)	126, 211, 235, 908
BspACI	CCGC	4 cut(s)	9, 390, 413, 607
BspANI	GGCC	1 cut(s)	841
BspCNI	CTCAG	1 cut(s)	897
BspLI	GGNNCC	1 cut(s)	737
BspMAI	CTGCAG	2 cut(s)	164, 401
BspT104I	TTCGAA	1 cut(s)	362
BspTNI	GGTCTC	1 cut(s)	14
BsrBI	CCGCTC	1 cut(s)	607
BsrDI	GCAATG	3 cut(s)	166, 501, 751
BsrI	ACTGG	4 cut(s)	206, 409, 629, 681
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	4 cut(s)	126, 211, 235, 908
Bst2UI	CCWGG	2 cut(s)	26, 683
Bst4CI	ACNGT	8 cut(s)	34, 66, 138, 293, 431, 460, 556, 650
BstAPI	GCANNNNNTGC	1 cut(s)	168
BstBI	TTCGAA	1 cut(s)	362
BstC8I	GCNNGC	3 cut(s)	104, 164, 843
BstDEI	CTNAG	1 cut(s)	905
BstF5I	GGATG	3 cut(s)	64, 283, 449
BstKTI	GATC	4 cut(s)	129, 214, 238, 911
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	4 cut(s)	126, 211, 235, 908
BstMWI	GCNNNNNNNGC	7 cut(s)	168, 188, 336, 396, 516, 633, 804
BstNI	CCWGG	2 cut(s)	26, 683
BstNSI	RCATGY	1 cut(s)	106
BstPAI	GACNNNNGTC	1 cut(s)	760
BstSCI	CCNGG	2 cut(s)	24, 681
BstSFI	CTRYAG	3 cut(s)	160, 292, 397
BstSLI	GKGCMC	1 cut(s)	573
BsuRI	GGCC	1 cut(s)	841
BtsCI	GGATG	3 cut(s)	64, 283, 449
BtsIMutI	CAGTG	4 cut(s)	71, 289, 427, 465
Cac8I	GCNNGC	3 cut(s)	104, 164, 843
Cfr13I	GGNCC	4 cut(s)	679, 736, 839, 893
Csp6I	GTAC	1 cut(s)	646
CspCI	CAANNNNNGTGG	2 cut(s)	733, 768
CviAII	CATG	6 cut(s)	103, 218, 233, 313, 564, 849
CviJI	RGCY	4 cut(s)	182, 297, 841, 875
CviKI_1	RGCY	4 cut(s)	182, 297, 841, 875
CviQI	GTAC	1 cut(s)	646
DdeI	CTNAG	1 cut(s)	905
DpnI	GATC	4 cut(s)	128, 213, 237, 910
DpnII	GATC	4 cut(s)	126, 211, 235, 908
DraIII	CACNNNGTG	1 cut(s)	784
DrdI	GACNNNNNNGTC	1 cut(s)	554
DseDI	GACNNNNNNGTC	1 cut(s)	554
EciI	GGCGGA	1 cut(s)	24
Eco31I	GGTCTC	1 cut(s)	14
Eco47I	GGWCC	3 cut(s)	679, 736, 893
Eco57I	CTGAAG	1 cut(s)	485
EcoO109I	RGGNCCY	2 cut(s)	736, 893
EcoRII	CCWGG	2 cut(s)	24, 681
EcoT22I	ATGCAT	2 cut(s)	108, 501
FaeI	CATG	6 cut(s)	106, 221, 236, 316, 567, 852
FaiI	YATR	9 cut(s)	104, 174, 219, 234, 314, 565, 578, 656, 850
FatI	CATG	6 cut(s)	102, 217, 232, 312, 563, 848
Fnu4HI	GCNGC	1 cut(s)	608
FokI	GGATG	3 cut(s)	71, 290, 456
Fsp4HI	GCNGC	1 cut(s)	608
GluI	GCNGC	1 cut(s)	608
GsuI	CTGGAG	1 cut(s)	426
HaeIII	GGCC	1 cut(s)	841
Hin1II	CATG	6 cut(s)	106, 221, 236, 316, 567, 852
HinfI	GANTC	2 cut(s)	470, 697
HphI	GGTGA	1 cut(s)	40
Hpy166II	GTNNAC	1 cut(s)	755
Hpy188I	TCNGA	6 cut(s)	131, 240, 711, 720, 766, 868
Hpy188III	TCNNGA	1 cut(s)	887
Hpy8I	GTNNAC	1 cut(s)	755
HpyAV	CCTTC	3 cut(s)	73, 460, 884
HpyCH4III	ACNGT	8 cut(s)	34, 66, 138, 293, 431, 460, 556, 650
HpyCH4IV	ACGT	3 cut(s)	357, 661, 761
HpyF10VI	GCNNNNNNNGC	7 cut(s)	168, 188, 336, 396, 516, 633, 804
HpyF3I	CTNAG	1 cut(s)	905
HpySE526I	ACGT	3 cut(s)	357, 661, 761
Hsp92II	CATG	6 cut(s)	106, 221, 236, 316, 567, 852
Kzo9I	GATC	4 cut(s)	126, 211, 235, 908
LmnI	GCTCC	1 cut(s)	604
LweI	GCATC	6 cut(s)	92, 110, 434, 508, 682, 854
MaeII	ACGT	3 cut(s)	357, 661, 761
MaeIII	GTNAC	5 cut(s)	28, 380, 431, 449, 657
MalI	GATC	4 cut(s)	128, 213, 237, 910
MbiI	CCGCTC	1 cut(s)	607
MboI	GATC	4 cut(s)	126, 211, 235, 908
MfeI	CAATTG	2 cut(s)	478, 505
MhlI	GDGCHC	2 cut(s)	136, 573
MluCI	AATT	4 cut(s)	92, 478, 505, 772
MlyI	GAGTC	1 cut(s)	691
MnlI	CCTC	8 cut(s)	237, 401, 717, 749, 760, 809, 816, 830
Mph1103I	ATGCAT	2 cut(s)	108, 501
MroXI	GAANNNNTTC	1 cut(s)	422
MslI	CAYNNNNRTG	4 cut(s)	51, 480, 664, 793
MspR9I	CCNGG	2 cut(s)	26, 683
MunI	CAATTG	2 cut(s)	478, 505
Mva1269I	GAATGC	1 cut(s)	193
MvaI	CCWGG	2 cut(s)	26, 683
MwoI	GCNNNNNNNGC	7 cut(s)	168, 188, 336, 396, 516, 633, 804
NdeII	GATC	4 cut(s)	126, 211, 235, 908
NlaIII	CATG	6 cut(s)	106, 221, 236, 316, 567, 852
NlaIV	GGNNCC	1 cut(s)	737
NmuCI	GTSAC	4 cut(s)	28, 380, 431, 657
NsiI	ATGCAT	2 cut(s)	108, 501
NspI	RCATGY	1 cut(s)	106
NspV	TTCGAA	1 cut(s)	362
OliI	CACNNNNGTG	2 cut(s)	480, 664
PaeI	GCATGC	1 cut(s)	106
PctI	GAATGC	1 cut(s)	193
PdmI	GAANNNNTTC	1 cut(s)	422
PfeI	GAWTC	1 cut(s)	470
PkrI	GCNGC	1 cut(s)	609
PleI	GAGTC	1 cut(s)	691
PpsI	GAGTC	1 cut(s)	691
PpuMI	RGGWCCY	2 cut(s)	736, 893
PshAI	GACNNNNGTC	1 cut(s)	760
Psp5II	RGGWCCY	2 cut(s)	736, 893
Psp6I	CCWGG	2 cut(s)	24, 681
PspGI	CCWGG	2 cut(s)	24, 681
PspN4I	GGNNCC	1 cut(s)	737
PspPI	GGNCC	4 cut(s)	679, 736, 839, 893
PspPPI	RGGWCCY	2 cut(s)	736, 893
PstI	CTGCAG	2 cut(s)	164, 401
RsaI	GTAC	1 cut(s)	647
RsaNI	GTAC	1 cut(s)	646
RseI	CAYNNNNRTG	4 cut(s)	51, 480, 664, 793
SatI	GCNGC	1 cut(s)	608
Sau3AI	GATC	4 cut(s)	126, 211, 235, 908
Sau96I	GGNCC	4 cut(s)	679, 736, 839, 893
SchI	GAGTC	1 cut(s)	691
ScrFI	CCNGG	2 cut(s)	26, 683
SduI	GDGCHC	2 cut(s)	136, 573
SetI	ASST	8 cut(s)	30, 360, 412, 664, 764, 771, 895, 906
SfaNI	GCATC	6 cut(s)	92, 110, 434, 508, 682, 854
SfcI	CTRYAG	3 cut(s)	160, 292, 397
SfuI	TTCGAA	1 cut(s)	362
SinI	GGWCC	3 cut(s)	679, 736, 893
SmiMI	CAYNNNNRTG	4 cut(s)	51, 480, 664, 793
SphI	GCATGC	1 cut(s)	106
Sse9I	AATT	4 cut(s)	92, 478, 505, 772
SsiI	CCGC	4 cut(s)	9, 390, 413, 607
StyD4I	CCNGG	2 cut(s)	24, 681
TaaI	ACNGT	8 cut(s)	34, 66, 138, 293, 431, 460, 556, 650
TaiI	ACGT	3 cut(s)	360, 664, 764
TaqI	TCGA	2 cut(s)	156, 362
TasI	AATT	4 cut(s)	92, 478, 505, 772
TauI	GCSGC	1 cut(s)	610
TfiI	GAWTC	1 cut(s)	470
TscAI	CASTG	4 cut(s)	71, 296, 434, 465
TseFI	GTSAC	4 cut(s)	28, 380, 431, 657
Tsp45I	GTSAC	4 cut(s)	28, 380, 431, 657
TspDTI	ATGAA	2 cut(s)	75, 246
TspGWI	ACGGA	1 cut(s)	130
TspRI	CASTG	4 cut(s)	71, 296, 434, 465
VpaK11BI	GGWCC	3 cut(s)	679, 736, 893
XapI	RAATTY	2 cut(s)	92, 772
XceI	RCATGY	1 cut(s)	106
XcmI	CCANNNNNNNNNTGG	2 cut(s)	32, 190
XmnI	GAANNNNTTC	1 cut(s)	422
Zsp2I	ATGCAT	2 cut(s)	108, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.