Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001295

Physical Location & Seq

Genomic Coordinates Reverse (-)

15754097 .. 15755837

Gene Structure 1741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g12051.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGAGGTTCATGATCAATCCTTCATCTCTTCTCAACAAGCTTGGAAGAAGCTACTCCAACAAGTCATACGAAAGGCTCGTACACGAAGATGACCAGGTCGAGAGGTCCAAGAAGAAGCAGCGTCGTCGATCAACTCCAAAAGGTTCTATAGATTTGGTTGTGGGCAAAGAGGAGAAGATATACTCAGTTCCCCTCGAGTACCTCTCACACCCAAAGCTCCAAGAACTCCTTAAGAAGTACCAAGAACTTGTCTTTGATCCAAGATTTGGTGATCCGATTTTTCTTGAATATTTTTCTACGGATACCTTTGACCAGGCGGGCGAAGTTTACGTGCTTCACATGGCGGCCGTGGAGGACTGGAGAGTGGGGATGAAGCTCTGGGCGGAGATTAACAAGAATCGAATACAAAGAAGTTGGACGTTGGACGAAGAGGAAGAATCGGATCGAAGGAAGATGTTGGACGTTGAACGCGCGTATAGGCTGATAAGAAGAACAAAGAAGTTGATGATAGATTGGCCATACCCTCTTGCAGAGGACAAGATGTTTCATGAATTGTTCTTGAATCTTGAGGATGCCACTGGACTGTTTGTAAATGGAGATCATGTTGATGTGCAGTCTGTCTATACTTCCTCCAATTGCCTACATCACATCCTAGTTTTGCTTTATAAATGGAAAGCTCCTCCTCTTCCAGTCCCTAGCTATCTATGGCCGGGAATGTGGATCGAGTTGTTCATTGGCATTCTTTCGGCTGGAAACCATTTTGCTGAGCAGATTGCTAGCTGTAAGGAAAAGAGGAGGAAACAACAAGGGAAATGGAGGAAACGGAGGAGGCAAAGGGAGGAAACGGAGGAGGTAAGGGAGGAAACGGAGGAGGCAAGGGAGGAAATGGAGGAGGCAAGGGAGGAAACGGAGGCATGGACACGAAACCCAGAACTAGATGATGATGATCCTGATGCTGCTGCAAGAGTATTAGGCCGGTGGAGAAATAGCTTATTGTTTGCTGATCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

337

Amino Acids

40.01

Weight (kDa)

5.89

Isoelectric Point (pI)

62.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	30 - 82	7.4e-07	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001295)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12051 FvH4_5g32781 FvH4_6g21652
prunus_persica	Prupe.1G235700_v2.0.a1 Prupe.2G131400_v2.0.a1 Prupe.2G131500_v2.0.a1 Prupe.2G131600_v2.0.a1 Prupe.8G072300_v2.0.a1 Prupe.8G072400_v2.0.a1
rosa_laevigata	RLG00000023594 RLG00000023595 RLG00000023596
rosa_multiflora	Rmu_sc0000382.1_g000036 Rmu_sc0000382.1_g000038 Rmu_sc0002978.1_g000014 Rmu_sc0002978.1_g000017 Rmu_sc0002978.1_g000018 Rmu_sc0002978.1_g000021 Rmu_sc0015470.1_g000003 Rmu_sc0015470.1_g000005 Rmu_sc0015470.1_g000006 Rmu_sc0015470.1_g000008
rosa_roxburghii	Rroxscaffold_1G00044700 Rroxscaffold_6G00402540 Rroxscaffold_6G00402550 Rroxscaffold_6G00402560
rosa_rugosa	Rorug03G0172000 Rorug03G0172100 Rorug03G0172200.1 Rorug03G0172500 Rorug05G0152100 Rorug05G0152300
rosa_samantha	Rh1BG192300 Rh1DG220700 Rh3AG223400 Rh3AG223500 Rh3AG223800 Rh3BG256100 Rh3BG256200 Rh3BG256300 Rh3BG256600 Rh3CG252100 Rh3CG252200 Rh3CG252300 Rh3CG252400 Rh3DG248300 Rh3DG248400 Rh3DG248500 Rh3DG248600 Rh5BG246800 Rh5CG277900 Rh5DG255400
rosa_wichuraiana	Rw3G020040 Rw3G020050 Rw3G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	666
AccB7I	CCANNNNNTGG	1 cut(s)	266
AccII	CGCG	2 cut(s)	471, 473
AciI	CCGC	3 cut(s)	317, 344, 383
AclWI	GGATC	5 cut(s)	251, 266, 450, 728, 941
AcoI	YGGCCR	3 cut(s)	345, 515, 707
AfaI	GTAC	3 cut(s)	81, 200, 239
AfiI	CCNNNNNNNGG	1 cut(s)	266
AflII	CTTAAG	1 cut(s)	230
AgsI	TTSAA	3 cut(s)	287, 467, 562
AjnI	CCWGG	2 cut(s)	93, 312
AluBI	AGCT	8 cut(s)	40, 51, 217, 376, 677, 699, 780, 990
AluI	AGCT	8 cut(s)	40, 51, 217, 376, 677, 699, 780, 990
AlwI	GGATC	5 cut(s)	251, 266, 450, 728, 941
Ama87I	CYCGRG	1 cut(s)	194
AoxI	GGCC	4 cut(s)	345, 515, 707, 973
ApeKI	GCWGC	3 cut(s)	118, 956, 959
AspLEI	GCGC	1 cut(s)	473
AspS9I	GGNCC	1 cut(s)	105
AsuC2I	CCSGG	1 cut(s)	711
AsuHPI	GGTGA	1 cut(s)	281
AsuNHI	GCTAGC	1 cut(s)	776
AvaI	CYCGRG	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	105
BalI	TGGCCA	1 cut(s)	517
BbvI	GCAGC	3 cut(s)	130, 943, 946
BceAI	ACGGC	1 cut(s)	332
BcgI	CGANNNNNNTGC	2 cut(s)	107, 141
BciT130I	CCWGG	2 cut(s)	95, 314
BciVI	GTATCC	1 cut(s)	295
BclI	TGATCA	2 cut(s)	12, 1003
BcnI	CCSGG	1 cut(s)	711
BfaI	CTAG	4 cut(s)	653, 696, 777, 935
BfmI	CTRYAG	1 cut(s)	147
BfrI	CTTAAG	1 cut(s)	230
BfuI	GTATCC	1 cut(s)	295
BisI	GCNGC	4 cut(s)	119, 345, 957, 960
BlpI	GCTNAGC	1 cut(s)	765
BlsI	GCNGC	4 cut(s)	120, 346, 958, 961
Bme1390I	CCNGG	3 cut(s)	95, 314, 711
Bme18I	GGWCC	1 cut(s)	105
BmeT110I	CYCGRG	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	105
BmrFI	CCNGG	3 cut(s)	95, 314, 711
BmsI	GCATC	2 cut(s)	562, 943
BmtI	GCTAGC	1 cut(s)	780
BplI	GAGNNNNNCTC	2 cut(s)	188, 220
BpmI	CTGGAG	1 cut(s)	379
Bpu1102I	GCTNAGC	1 cut(s)	765
BpuEI	CTTGAG	1 cut(s)	587
BpuMI	CCSGG	1 cut(s)	711
BsaAI	YACGTR	1 cut(s)	331
BsaBI	GATNNNNATC	1 cut(s)	945
BsaJI	CCNNGG	1 cut(s)	348
BsaXI	ACNNNNNCTCC	2 cut(s)	588, 618
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
Bse118I	RCCGGY	1 cut(s)	975
Bse1I	ACTGG	3 cut(s)	362, 583, 689
Bse8I	GATNNNNATC	1 cut(s)	945
BseBI	CCWGG	2 cut(s)	95, 314
BseDI	CCNNGG	1 cut(s)	348
BseGI	GGATG	3 cut(s)	375, 577, 648
BseJI	GATNNNNATC	1 cut(s)	945
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseMII	CTCAG	2 cut(s)	198, 756
BseNI	ACTGG	3 cut(s)	362, 583, 689
BseRI	GAGGAG	8 cut(s)	185, 669, 672, 808, 841, 863, 884, 905
BseX3I	CGGCCG	1 cut(s)	345
BseXI	GCAGC	3 cut(s)	130, 943, 946
BsgI	GTGCAG	1 cut(s)	632
Bsh1236I	CGCG	2 cut(s)	471, 473
Bsh1285I	CGRYCG	1 cut(s)	348
BshFI	GGCC	4 cut(s)	347, 517, 709, 975
BsiEI	CGRYCG	1 cut(s)	348
BsiHKCI	CYCGRG	1 cut(s)	194
BsiSI	CCGG	2 cut(s)	710, 976
BslFI	GGGAC	1 cut(s)	677
BslI	CCNNNNNNNGG	1 cut(s)	266
BsmFI	GGGAC	1 cut(s)	677
BsmI	GAATGC	1 cut(s)	738
BsnI	GGCC	4 cut(s)	347, 517, 709, 975
BsoBI	CYCGRG	1 cut(s)	194
Bsp143I	GATC	9 cut(s)	12, 128, 256, 271, 442, 598, 720, 946, 1003
Bsp1720I	GCTNAGC	1 cut(s)	765
BspACI	CCGC	3 cut(s)	317, 344, 383
BspANI	GGCC	4 cut(s)	347, 517, 709, 975
BspCNI	CTCAG	2 cut(s)	197, 757
BspFNI	CGCG	2 cut(s)	471, 473
BspHI	TCATGA	2 cut(s)	9, 547
BspOI	GCTAGC	1 cut(s)	780
BspPI	GGATC	5 cut(s)	251, 266, 450, 728, 941
BspTI	CTTAAG	1 cut(s)	230
BsrFI	RCCGGY	1 cut(s)	975
BsrI	ACTGG	3 cut(s)	362, 583, 689
BssAI	RCCGGY	1 cut(s)	975
BssECI	CCNNGG	1 cut(s)	348
BssMI	GATC	9 cut(s)	12, 128, 256, 271, 442, 598, 720, 946, 1003
Bst2UI	CCWGG	2 cut(s)	95, 314
Bst4CI	ACNGT	1 cut(s)	585
Bst6I	CTCTTC	3 cut(s)	33, 423, 690
BstAFI	CTTAAG	1 cut(s)	230
BstBAI	YACGTR	1 cut(s)	331
BstC8I	GCNNGC	2 cut(s)	319, 778
BstDEI	CTNAG	2 cut(s)	184, 765
BstDSI	CCRYGG	1 cut(s)	348
BstF5I	GGATG	3 cut(s)	375, 577, 648
BstFNI	CGCG	2 cut(s)	471, 473
BstHHI	GCGC	1 cut(s)	473
BstKTI	GATC	9 cut(s)	15, 131, 259, 274, 445, 601, 723, 949, 1006
BstMBI	GATC	9 cut(s)	12, 128, 256, 271, 442, 598, 720, 946, 1003
BstMCI	CGRYCG	1 cut(s)	348
BstNI	CCWGG	2 cut(s)	95, 314
BstSCI	CCNGG	3 cut(s)	93, 312, 709
BstSFI	CTRYAG	1 cut(s)	147
BstUI	CGCG	2 cut(s)	471, 473
BstV1I	GCAGC	3 cut(s)	130, 943, 946
BstZI	CGGCCG	1 cut(s)	345
BsuI	GTATCC	1 cut(s)	295
BsuRI	GGCC	4 cut(s)	347, 517, 709, 975
BtgI	CCRYGG	1 cut(s)	348
BtsCI	GGATG	3 cut(s)	375, 577, 648
BtsIMutI	CAGTG	1 cut(s)	576
Cac8I	GCNNGC	2 cut(s)	319, 778
CciI	TCATGA	2 cut(s)	9, 547
CfoI	GCGC	1 cut(s)	473
Cfr10I	RCCGGY	1 cut(s)	975
Cfr13I	GGNCC	1 cut(s)	105
CseI	GACGC	1 cut(s)	110
CsiI	ACCWGGT	1 cut(s)	93
Csp6I	GTAC	3 cut(s)	80, 199, 238
CviAII	CATG	5 cut(s)	10, 340, 548, 602, 915
CviQI	GTAC	3 cut(s)	80, 199, 238
DdeI	CTNAG	2 cut(s)	184, 765
DpnI	GATC	9 cut(s)	14, 130, 258, 273, 444, 600, 722, 948, 1005
DpnII	GATC	9 cut(s)	12, 128, 256, 271, 442, 598, 720, 946, 1003
EaeI	YGGCCR	3 cut(s)	345, 515, 707
EagI	CGGCCG	1 cut(s)	345
Eam1104I	CTCTTC	3 cut(s)	33, 423, 690
EarI	CTCTTC	3 cut(s)	33, 423, 690
EciI	GGCGGA	1 cut(s)	398
EclXI	CGGCCG	1 cut(s)	345
Eco47I	GGWCC	1 cut(s)	105
Eco52I	CGGCCG	1 cut(s)	345
Eco88I	CYCGRG	1 cut(s)	194
EcoRII	CCWGG	2 cut(s)	93, 312
FaeI	CATG	5 cut(s)	13, 343, 551, 605, 918
FalI	AAGNNNNNCTT	2 cut(s)	213, 245
FaqI	GGGAC	1 cut(s)	677
FatI	CATG	5 cut(s)	9, 339, 547, 601, 914
FauI	CCCGC	1 cut(s)	310
FbaI	TGATCA	2 cut(s)	12, 1003
Fnu4HI	GCNGC	4 cut(s)	119, 345, 957, 960
FokI	GGATG	3 cut(s)	382, 584, 635
Fsp4HI	GCNGC	4 cut(s)	119, 345, 957, 960
FspBI	CTAG	4 cut(s)	653, 696, 777, 935
GlaI	GCGC	1 cut(s)	472
GluI	GCNGC	4 cut(s)	119, 345, 957, 960
GsuI	CTGGAG	1 cut(s)	379
HaeIII	GGCC	4 cut(s)	347, 517, 709, 975
HapII	CCGG	2 cut(s)	710, 976
HgaI	GACGC	1 cut(s)	110
HhaI	GCGC	1 cut(s)	473
Hin1II	CATG	5 cut(s)	13, 343, 551, 605, 918
Hin6I	GCGC	1 cut(s)	471
HinP1I	GCGC	1 cut(s)	471
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	3 cut(s)	397, 437, 562
HpaII	CCGG	2 cut(s)	710, 976
HphI	GGTGA	1 cut(s)	281
Hpy166II	GTNNAC	2 cut(s)	82, 328
Hpy188I	TCNGA	2 cut(s)	276, 442
Hpy188III	TCNNGA	7 cut(s)	10, 100, 284, 548, 559, 566, 950
Hpy8I	GTNNAC	2 cut(s)	82, 328
Hpy99I	CGWCG	2 cut(s)	126, 129
HpyAV	CCTTC	2 cut(s)	30, 441
HpyCH4III	ACNGT	1 cut(s)	585
HpyCH4IV	ACGT	3 cut(s)	330, 419, 462
HpyCH4V	TGCA	3 cut(s)	530, 613, 962
HpyF3I	CTNAG	2 cut(s)	184, 765
HpySE526I	ACGT	3 cut(s)	330, 419, 462
Hsp92II	CATG	5 cut(s)	13, 343, 551, 605, 918
HspAI	GCGC	1 cut(s)	471
Ksp22I	TGATCA	2 cut(s)	12, 1003
Kzo9I	GATC	9 cut(s)	12, 128, 256, 271, 442, 598, 720, 946, 1003
LmnI	GCTCC	2 cut(s)	222, 682
Lsp1109I	GCAGC	3 cut(s)	130, 943, 946
LweI	GCATC	2 cut(s)	562, 943
MabI	ACCWGGT	1 cut(s)	93
MaeI	CTAG	4 cut(s)	653, 696, 777, 935
MaeII	ACGT	3 cut(s)	330, 419, 462
MalI	GATC	9 cut(s)	14, 130, 258, 273, 444, 600, 722, 948, 1005
MboI	GATC	9 cut(s)	12, 128, 256, 271, 442, 598, 720, 946, 1003
MfeI	CAATTG	1 cut(s)	634
MlsI	TGGCCA	1 cut(s)	517
MluCI	AATT	2 cut(s)	551, 634
MluNI	TGGCCA	1 cut(s)	517
MmeI	TCCRAC	4 cut(s)	81, 395, 402, 438
Mox20I	TGGCCA	1 cut(s)	517
MscI	TGGCCA	1 cut(s)	517
MseI	TTAA	2 cut(s)	231, 390
MslI	CAYNNNNRTG	2 cut(s)	87, 606
Msp20I	TGGCCA	1 cut(s)	517
MspCI	CTTAAG	1 cut(s)	230
MspI	CCGG	2 cut(s)	710, 976
MspR9I	CCNGG	3 cut(s)	95, 314, 711
MunI	CAATTG	1 cut(s)	634
Mva1269I	GAATGC	1 cut(s)	738
MvaI	CCWGG	2 cut(s)	95, 314
MvnI	CGCG	2 cut(s)	471, 473
NciI	CCSGG	1 cut(s)	711
NdeII	GATC	9 cut(s)	12, 128, 256, 271, 442, 598, 720, 946, 1003
NheI	GCTAGC	1 cut(s)	776
NlaIII	CATG	5 cut(s)	13, 343, 551, 605, 918
PaeR7I	CTCGAG	1 cut(s)	194
PagI	TCATGA	2 cut(s)	9, 547
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PctI	GAATGC	1 cut(s)	738
PfeI	GAWTC	3 cut(s)	397, 437, 562
PflFI	GACNNNGTC	1 cut(s)	95
PflMI	CCANNNNNTGG	1 cut(s)	266
PkrI	GCNGC	4 cut(s)	120, 346, 958, 961
Ppu21I	YACGTR	1 cut(s)	331
PsiI	TTATAA	1 cut(s)	666
Psp6I	CCWGG	2 cut(s)	93, 312
PspGI	CCWGG	2 cut(s)	93, 312
PspPI	GGNCC	1 cut(s)	105
PspXI	VCTCGAGB	1 cut(s)	194
PsyI	GACNNNGTC	1 cut(s)	95
RsaI	GTAC	3 cut(s)	81, 200, 239
RsaNI	GTAC	3 cut(s)	80, 199, 238
RseI	CAYNNNNRTG	2 cut(s)	87, 606
SaqAI	TTAA	2 cut(s)	231, 390
SatI	GCNGC	4 cut(s)	119, 345, 957, 960
Sau3AI	GATC	9 cut(s)	12, 128, 256, 271, 442, 598, 720, 946, 1003
Sau96I	GGNCC	1 cut(s)	105
ScrFI	CCNGG	3 cut(s)	95, 314, 711
SexAI	ACCWGGT	1 cut(s)	93
SfaNI	GCATC	2 cut(s)	562, 943
SfcI	CTRYAG	1 cut(s)	147
Sfr274I	CTCGAG	1 cut(s)	194
SinI	GGWCC	1 cut(s)	105
SlaI	CTCGAG	1 cut(s)	194
SmiMI	CAYNNNNRTG	2 cut(s)	87, 606
SmlI	CTYRAG	3 cut(s)	194, 230, 566
SmoI	CTYRAG	3 cut(s)	194, 230, 566
Sse9I	AATT	2 cut(s)	551, 634
SsiI	CCGC	3 cut(s)	317, 344, 383
SspI	AATATT	1 cut(s)	290
SspMI	CTAG	4 cut(s)	653, 696, 777, 935
StyD4I	CCNGG	3 cut(s)	93, 312, 709
TaaI	ACNGT	1 cut(s)	585
TaiI	ACGT	3 cut(s)	333, 422, 465
TaqI	TCGA	6 cut(s)	99, 127, 195, 400, 445, 723
TasI	AATT	2 cut(s)	551, 634
TauI	GCSGC	1 cut(s)	347
TfiI	GAWTC	3 cut(s)	397, 437, 562
Tru1I	TTAA	2 cut(s)	231, 390
Tru9I	TTAA	2 cut(s)	231, 390
TscAI	CASTG	1 cut(s)	583
TseI	GCWGC	3 cut(s)	118, 956, 959
TspDTI	ATGAA	5 cut(s)	12, 386, 536, 564, 721
TspGWI	ACGGA	5 cut(s)	314, 838, 860, 881, 923
TspRI	CASTG	1 cut(s)	583
Tth111I	GACNNNGTC	1 cut(s)	95
Van91I	CCANNNNNTGG	1 cut(s)	266
Vha464I	CTTAAG	1 cut(s)	230
VpaK11BI	GGWCC	1 cut(s)	105
XhoI	CTCGAG	1 cut(s)	194
XspI	CTAG	4 cut(s)	653, 696, 777, 935

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.