Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001295

Physical Location & Seq

Genomic Coordinates Forward (+)

24579234 .. 24592844

Gene Structure 13611 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG252400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGTTTCTCTCTTGAATTCCATACATCATCATTCCAAGCTAAGACTACCAGACTACATGATGTTCATGAATCCTGCATGTCTTATCAAGAAGGCATATGATCGGTTGGTACATGAAGATGACCAGGTCAAGAGCTCCAAGAAGAAGCATGGATCAACTCCTAAAGTTTCTATAGATTTGTTTGTGGGCAAAGAGGAGAAGAAATACTCTATTTCTCTCGAGTACTTTTTACACCCAAAGCTCCAAGAACTCCTCAAGGAGTACCGAGAACTCGTATTCGATCCAAGATGTGATGAGCCGATTCGTAGGGAACTGCGGCCGGTGGCAAGGACTGGGTCGAGACCAGTGGATCTCAAGGGCGGCACCGGTGGTTTGGGAAGCCGGTTGATCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

131

Amino Acids

15.13

Weight (kDa)

9.37

Isoelectric Point (pI)

44.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001295)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12051 FvH4_5g32781 FvH4_6g21652
prunus_persica	Prupe.1G235700_v2.0.a1 Prupe.2G131400_v2.0.a1 Prupe.2G131500_v2.0.a1 Prupe.2G131600_v2.0.a1 Prupe.8G072300_v2.0.a1 Prupe.8G072400_v2.0.a1
rosa_laevigata	RLG00000023594 RLG00000023595 RLG00000023596
rosa_multiflora	Rmu_sc0000382.1_g000036 Rmu_sc0000382.1_g000038 Rmu_sc0002978.1_g000014 Rmu_sc0002978.1_g000017 Rmu_sc0002978.1_g000018 Rmu_sc0002978.1_g000021 Rmu_sc0015470.1_g000003 Rmu_sc0015470.1_g000005 Rmu_sc0015470.1_g000006 Rmu_sc0015470.1_g000008
rosa_roxburghii	Rroxscaffold_1G00044700 Rroxscaffold_6G00402540 Rroxscaffold_6G00402550 Rroxscaffold_6G00402560
rosa_rugosa	Rorug03G0172000 Rorug03G0172100 Rorug03G0172200.1 Rorug03G0172500 Rorug05G0152100 Rorug05G0152300
rosa_samantha	Rh1BG192300 Rh1DG220700 Rh3AG223400 Rh3AG223500 Rh3AG223800 Rh3BG256100 Rh3BG256200 Rh3BG256300 Rh3BG256600 Rh3CG252100 Rh3CG252200 Rh3CG252300 Rh3CG252400 Rh3DG248300 Rh3DG248400 Rh3DG248500 Rh3DG248600 Rh5BG246800 Rh5CG277900 Rh5DG255400
rosa_wichuraiana	Rw3G020040 Rw3G020050 Rw3G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	362
AciI	CCGC	2 cut(s)	316, 360
AclWI	GGATC	3 cut(s)	160, 275, 357
AcoI	YGGCCR	1 cut(s)	317
AcsI	RAATTY	1 cut(s)	16
AfaI	GTAC	3 cut(s)	111, 224, 263
AgeI	ACCGGT	1 cut(s)	365
AgsI	TTSAA	1 cut(s)	16
AjnI	CCWGG	1 cut(s)	123
AluBI	AGCT	3 cut(s)	40, 135, 241
AluI	AGCT	3 cut(s)	40, 135, 241
Alw21I	GWGCWC	1 cut(s)	137
Alw26I	GTCTC	1 cut(s)	334
AlwI	GGATC	3 cut(s)	160, 275, 357
Ama87I	CYCGRG	1 cut(s)	218
AoxI	GGCC	1 cut(s)	317
ApoI	RAATTY	1 cut(s)	16
AsiGI	ACCGGT	1 cut(s)	365
AvaI	CYCGRG	1 cut(s)	218
BanI	GGYRCC	1 cut(s)	362
BanII	GRGCYC	1 cut(s)	137
Bbv12I	GWGCWC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	125
BcoDI	GTCTC	1 cut(s)	334
BfmI	CTRYAG	1 cut(s)	171
BisI	GCNGC	2 cut(s)	317, 361
BlsI	GCNGC	2 cut(s)	318, 362
BmcAI	AGTACT	1 cut(s)	224
Bme1390I	CCNGG	1 cut(s)	125
BmeT110I	CYCGRG	1 cut(s)	218
BmiI	GGNNCC	1 cut(s)	364
BmrFI	CCNGG	1 cut(s)	125
BmrI	ACTGGG	1 cut(s)	342
BmuI	ACTGGG	1 cut(s)	342
BpuEI	CTTGAG	2 cut(s)	239, 338
BsaI	GGTCTC	1 cut(s)	334
BsaWI	WCCGGW	1 cut(s)	365
Bse118I	RCCGGY	3 cut(s)	319, 365, 381
Bse1I	ACTGG	2 cut(s)	337, 344
BseBI	CCWGG	1 cut(s)	125
BseNI	ACTGG	2 cut(s)	337, 344
BseRI	GAGGAG	2 cut(s)	209, 242
BseX3I	CGGCCG	1 cut(s)	317
Bsh1285I	CGRYCG	1 cut(s)	320
BshFI	GGCC	1 cut(s)	319
BshNI	GGYRCC	1 cut(s)	362
BshTI	ACCGGT	1 cut(s)	365
BsiEI	CGRYCG	1 cut(s)	320
BsiHKAI	GWGCWC	1 cut(s)	137
BsiHKCI	CYCGRG	1 cut(s)	218
BsiSI	CCGG	3 cut(s)	320, 366, 382
BsmAI	GTCTC	1 cut(s)	334
BsnI	GGCC	1 cut(s)	319
Bso31I	GGTCTC	1 cut(s)	334
BsoBI	CYCGRG	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	137
Bsp143I	GATC	5 cut(s)	100, 152, 280, 349, 387
BspACI	CCGC	2 cut(s)	316, 360
BspANI	GGCC	1 cut(s)	319
BspHI	TCATGA	1 cut(s)	66
BspLI	GGNNCC	1 cut(s)	364
BspPI	GGATC	3 cut(s)	160, 275, 357
BspT107I	GGYRCC	1 cut(s)	362
BspTNI	GGTCTC	1 cut(s)	334
BsrFI	RCCGGY	3 cut(s)	319, 365, 381
BsrI	ACTGG	2 cut(s)	337, 344
BssAI	RCCGGY	3 cut(s)	319, 365, 381
BssMI	GATC	5 cut(s)	100, 152, 280, 349, 387
Bst2UI	CCWGG	1 cut(s)	125
BstDEI	CTNAG	1 cut(s)	41
BstKTI	GATC	5 cut(s)	103, 155, 283, 352, 390
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	5 cut(s)	100, 152, 280, 349, 387
BstMCI	CGRYCG	1 cut(s)	320
BstNI	CCWGG	1 cut(s)	125
BstNSI	RCATGY	1 cut(s)	81
BstSCI	CCNGG	1 cut(s)	123
BstSFI	CTRYAG	1 cut(s)	171
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
BstZI	CGGCCG	1 cut(s)	317
BsuRI	GGCC	1 cut(s)	319
BtsIMutI	CAGTG	1 cut(s)	351
CciI	TCATGA	1 cut(s)	66
Cfr10I	RCCGGY	3 cut(s)	319, 365, 381
CsiI	ACCWGGT	1 cut(s)	123
Csp6I	GTAC	3 cut(s)	110, 223, 262
CspAI	ACCGGT	1 cut(s)	365
CviAII	CATG	5 cut(s)	58, 67, 78, 113, 149
CviJI	RGCY	6 cut(s)	40, 135, 241, 298, 319, 381
CviKI_1	RGCY	6 cut(s)	40, 135, 241, 298, 319, 381
CviQI	GTAC	3 cut(s)	110, 223, 262
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	5 cut(s)	102, 154, 282, 351, 389
DpnII	GATC	5 cut(s)	100, 152, 280, 349, 387
EaeI	YGGCCR	1 cut(s)	317
EagI	CGGCCG	1 cut(s)	317
Ecl136II	GAGCTC	1 cut(s)	135
EclXI	CGGCCG	1 cut(s)	317
Eco24I	GRGCYC	1 cut(s)	137
Eco31I	GGTCTC	1 cut(s)	334
Eco52I	CGGCCG	1 cut(s)	317
Eco53kI	GAGCTC	1 cut(s)	135
Eco88I	CYCGRG	1 cut(s)	218
EcoICRI	GAGCTC	1 cut(s)	135
EcoRI	GAATTC	1 cut(s)	16
EcoRII	CCWGG	1 cut(s)	123
EcoT38I	GRGCYC	1 cut(s)	137
FaeI	CATG	5 cut(s)	61, 70, 81, 116, 152
FaiI	YATR	9 cut(s)	23, 59, 68, 79, 97, 99, 114, 150, 173
FatI	CATG	5 cut(s)	57, 66, 77, 112, 148
FauNDI	CATATG	1 cut(s)	97
Fnu4HI	GCNGC	2 cut(s)	317, 361
FriOI	GRGCYC	1 cut(s)	137
Fsp4HI	GCNGC	2 cut(s)	317, 361
GluI	GCNGC	2 cut(s)	317, 361
HaeIII	GGCC	1 cut(s)	319
HapII	CCGG	3 cut(s)	320, 366, 382
Hin1II	CATG	5 cut(s)	61, 70, 81, 116, 152
HinfI	GANTC	2 cut(s)	70, 301
HpaII	CCGG	3 cut(s)	320, 366, 382
Hpy188III	TCNNGA	6 cut(s)	13, 67, 88, 130, 218, 339
HpyAV	CCTTC	1 cut(s)	85
HpyCH4V	TGCA	1 cut(s)	77
HpyF3I	CTNAG	1 cut(s)	41
Hsp92II	CATG	5 cut(s)	61, 70, 81, 116, 152
Kzo9I	GATC	5 cut(s)	100, 152, 280, 349, 387
LmnI	GCTCC	2 cut(s)	140, 246
LpnPI	CCDG	8 cut(s)	63, 87, 110, 137, 318, 333, 357, 379
MabI	ACCWGGT	1 cut(s)	123
MalI	GATC	5 cut(s)	102, 154, 282, 351, 389
MboI	GATC	5 cut(s)	100, 152, 280, 349, 387
MboII	GAAGA	3 cut(s)	128, 154, 211
MflI	RGATCY	1 cut(s)	349
MhlI	GDGCHC	1 cut(s)	137
MluCI	AATT	1 cut(s)	16
MnlI	CCTC	2 cut(s)	187, 263
MslI	CAYNNNNRTG	1 cut(s)	117
MspI	CCGG	3 cut(s)	320, 366, 382
MspR9I	CCNGG	1 cut(s)	125
MvaI	CCWGG	1 cut(s)	125
NdeI	CATATG	1 cut(s)	97
NdeII	GATC	5 cut(s)	100, 152, 280, 349, 387
NlaIII	CATG	5 cut(s)	61, 70, 81, 116, 152
NlaIV	GGNNCC	1 cut(s)	364
NspI	RCATGY	1 cut(s)	81
PaeR7I	CTCGAG	1 cut(s)	218
PagI	TCATGA	1 cut(s)	66
PfeI	GAWTC	2 cut(s)	70, 301
PflFI	GACNNNGTC	2 cut(s)	125, 334
PinAI	ACCGGT	1 cut(s)	365
PkrI	GCNGC	2 cut(s)	318, 362
Psp124BI	GAGCTC	1 cut(s)	137
Psp6I	CCWGG	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	123
PspN4I	GGNNCC	1 cut(s)	364
PsuI	RGATCY	1 cut(s)	349
PsyI	GACNNNGTC	2 cut(s)	125, 334
RsaI	GTAC	3 cut(s)	111, 224, 263
RsaNI	GTAC	3 cut(s)	110, 223, 262
RseI	CAYNNNNRTG	1 cut(s)	117
SacI	GAGCTC	1 cut(s)	137
SatI	GCNGC	2 cut(s)	317, 361
Sau3AI	GATC	5 cut(s)	100, 152, 280, 349, 387
ScaI	AGTACT	1 cut(s)	224
ScrFI	CCNGG	1 cut(s)	125
SduI	GDGCHC	1 cut(s)	137
SetI	ASST	4 cut(s)	42, 129, 137, 243
SexAI	ACCWGGT	1 cut(s)	123
SfcI	CTRYAG	1 cut(s)	171
Sfr274I	CTCGAG	1 cut(s)	218
SgrAI	CRCCGGYG	1 cut(s)	365
SlaI	CTCGAG	1 cut(s)	218
SmiMI	CAYNNNNRTG	1 cut(s)	117
SmlI	CTYRAG	3 cut(s)	218, 254, 353
SmoI	CTYRAG	3 cut(s)	218, 254, 353
Sse9I	AATT	1 cut(s)	16
SsiI	CCGC	2 cut(s)	316, 360
SstI	GAGCTC	1 cut(s)	137
StyD4I	CCNGG	1 cut(s)	123
TaqI	TCGA	4 cut(s)	219, 279, 338, 390
TasI	AATT	1 cut(s)	16
TatI	WGTACW	1 cut(s)	222
TauI	GCSGC	2 cut(s)	319, 363
TfiI	GAWTC	2 cut(s)	70, 301
TscAI	CASTG	1 cut(s)	351
TspDTI	ATGAA	3 cut(s)	55, 83, 129
TspRI	CASTG	1 cut(s)	351
Tth111I	GACNNNGTC	2 cut(s)	125, 334
XapI	RAATTY	1 cut(s)	16
XceI	RCATGY	1 cut(s)	81
XhoI	CTCGAG	1 cut(s)	218
ZrmI	AGTACT	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.