Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001295

Physical Location & Seq

Genomic Coordinates Reverse (-)

30261235 .. 30263074

Gene Structure 1840 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG277900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCTGGGTTCGACTTTGGGGCGATGCATAATGGTAGATCCATCGGTGCTTGTTGGGGTTTGGCTGGAAGATTTCGTTGGTTCTCGACAGGGGCCGGCCAGGGACGGCAGAGGTTGTTCATCAAGAAGCAACGAGGATTTCGAAAAGGTTACGTACCTTTGCTCATCGGCCACGAAAGAAAGAAGTACTACGTTCCTGTGAAGTATCTATCCTATCCAACGTTACAAGAACTGATCATCAAGAACCAACCAGATCAGGATATGTATGATCCAAGAATTGAAGGGCCTCTTGGGCTTCCATGTTTAAGAGCCGACTCGTTTGATCAGTTGCTGAAGAGCTTCAAGAAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

117

Amino Acids

13.46

Weight (kDa)

10.01

Isoelectric Point (pI)

51.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	47 - 112	2.5e-07	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001295)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12051 FvH4_5g32781 FvH4_6g21652
prunus_persica	Prupe.1G235700_v2.0.a1 Prupe.2G131400_v2.0.a1 Prupe.2G131500_v2.0.a1 Prupe.2G131600_v2.0.a1 Prupe.8G072300_v2.0.a1 Prupe.8G072400_v2.0.a1
rosa_laevigata	RLG00000023594 RLG00000023595 RLG00000023596
rosa_multiflora	Rmu_sc0000382.1_g000036 Rmu_sc0000382.1_g000038 Rmu_sc0002978.1_g000014 Rmu_sc0002978.1_g000017 Rmu_sc0002978.1_g000018 Rmu_sc0002978.1_g000021 Rmu_sc0015470.1_g000003 Rmu_sc0015470.1_g000005 Rmu_sc0015470.1_g000006 Rmu_sc0015470.1_g000008
rosa_roxburghii	Rroxscaffold_1G00044700 Rroxscaffold_6G00402540 Rroxscaffold_6G00402550 Rroxscaffold_6G00402560
rosa_rugosa	Rorug03G0172000 Rorug03G0172100 Rorug03G0172200.1 Rorug03G0172500 Rorug05G0152100 Rorug05G0152300
rosa_samantha	Rh1BG192300 Rh1DG220700 Rh3AG223400 Rh3AG223500 Rh3AG223800 Rh3BG256100 Rh3BG256200 Rh3BG256300 Rh3BG256600 Rh3CG252100 Rh3CG252200 Rh3CG252300 Rh3CG252400 Rh3DG248300 Rh3DG248400 Rh3DG248500 Rh3DG248600 Rh5BG246800 Rh5CG277900 Rh5DG255400
rosa_wichuraiana	Rw3G020040 Rw3G020050 Rw3G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	221
AclWI	GGATC	2 cut(s)	33, 263
AcoI	YGGCCR	2 cut(s)	97, 169
AcuI	CTGAAG	1 cut(s)	353
AfaI	GTAC	2 cut(s)	156, 188
AgsI	TTSAA	2 cut(s)	281, 343
AjnI	CCWGG	1 cut(s)	99
AjuI	GAANNNNNNNTTGG	4 cut(s)	61, 93, 273, 305
AluBI	AGCT	1 cut(s)	339
AluI	AGCT	1 cut(s)	339
AlwI	GGATC	2 cut(s)	33, 263
AlwNI	CAGNNNCTG	1 cut(s)	331
AoxI	GGCC	4 cut(s)	93, 97, 169, 284
Asp700I	GAANNNNTTC	1 cut(s)	338
AspS9I	GGNCC	2 cut(s)	93, 284
AsuII	TTCGAA	1 cut(s)	142
BccI	CCATC	1 cut(s)	50
BceAI	ACGGC	1 cut(s)	122
BciT130I	CCWGG	1 cut(s)	101
BclI	TGATCA	2 cut(s)	234, 322
BglI	GCCNNNNNGGC	1 cut(s)	292
BmcAI	AGTACT	1 cut(s)	188
Bme1390I	CCNGG	1 cut(s)	101
BmgT120I	GGNCC	2 cut(s)	93, 284
BmiI	GGNNCC	1 cut(s)	94
BmrFI	CCNGG	1 cut(s)	101
BmsI	GCATC	1 cut(s)	15
Bpu14I	TTCGAA	1 cut(s)	142
BsaAI	YACGTR	1 cut(s)	154
BsaJI	CCNNGG	1 cut(s)	100
Bse118I	RCCGGY	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	101
BseDI	CCNNGG	1 cut(s)	100
BseYI	CCCAGC	1 cut(s)	5
BshFI	GGCC	4 cut(s)	95, 99, 171, 286
BsiSI	CCGG	1 cut(s)	96
BslFI	GGGAC	1 cut(s)	117
BsmFI	GGGAC	1 cut(s)	117
BsnI	GGCC	4 cut(s)	95, 99, 171, 286
Bsp119I	TTCGAA	1 cut(s)	142
Bsp143I	GATC	5 cut(s)	38, 234, 253, 268, 322
BspANI	GGCC	4 cut(s)	95, 99, 171, 286
BspLI	GGNNCC	1 cut(s)	94
BspPI	GGATC	2 cut(s)	33, 263
BspQI	GCTCTTC	1 cut(s)	329
BspT104I	TTCGAA	1 cut(s)	142
BsrFI	RCCGGY	1 cut(s)	95
BssAI	RCCGGY	1 cut(s)	95
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	5 cut(s)	38, 234, 253, 268, 322
Bst2UI	CCWGG	1 cut(s)	101
Bst6I	CTCTTC	1 cut(s)	329
BstBAI	YACGTR	1 cut(s)	154
BstBI	TTCGAA	1 cut(s)	142
BstC8I	GCNNGC	1 cut(s)	97
BstKTI	GATC	5 cut(s)	41, 237, 256, 271, 325
BstMBI	GATC	5 cut(s)	38, 234, 253, 268, 322
BstMWI	GCNNNNNNNGC	1 cut(s)	292
BstNI	CCWGG	1 cut(s)	101
BstSCI	CCNGG	1 cut(s)	99
BstSNI	TACGTA	1 cut(s)	154
BstX2I	RGATCY	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	38
BsuRI	GGCC	4 cut(s)	95, 99, 171, 286
BtgZI	GCGATG	1 cut(s)	38
Cac8I	GCNNGC	1 cut(s)	97
CaiI	CAGNNNCTG	1 cut(s)	331
Cfr10I	RCCGGY	1 cut(s)	95
Cfr13I	GGNCC	2 cut(s)	93, 284
Csp6I	GTAC	2 cut(s)	155, 187
CviAII	CATG	1 cut(s)	300
CviJI	RGCY	9 cut(s)	5, 65, 95, 99, 171, 286, 295, 311, 339
CviKI_1	RGCY	9 cut(s)	5, 65, 95, 99, 171, 286, 295, 311, 339
CviQI	GTAC	2 cut(s)	155, 187
DpnI	GATC	5 cut(s)	40, 236, 255, 270, 324
DpnII	GATC	5 cut(s)	38, 234, 253, 268, 322
EaeI	YGGCCR	2 cut(s)	97, 169
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
Eco105I	TACGTA	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	353
EcoO109I	RGGNCCY	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	99
EcoT22I	ATGCAT	1 cut(s)	30
FaeI	CATG	1 cut(s)	303
FaiI	YATR	4 cut(s)	30, 263, 267, 301
FalI	AAGNNNNNCTT	2 cut(s)	273, 305
FaqI	GGGAC	1 cut(s)	117
FatI	CATG	1 cut(s)	299
FbaI	TGATCA	2 cut(s)	234, 322
FseI	GGCCGGCC	1 cut(s)	99
GsaI	CCCAGC	1 cut(s)	9
HaeIII	GGCC	4 cut(s)	95, 99, 171, 286
HapII	CCGG	1 cut(s)	96
Hin1II	CATG	1 cut(s)	303
HinfI	GANTC	1 cut(s)	314
HpaII	CCGG	1 cut(s)	96
Hpy188III	TCNNGA	5 cut(s)	85, 124, 241, 257, 343
HpyAV	CCTTC	1 cut(s)	275
HpyCH4IV	ACGT	3 cut(s)	153, 192, 221
HpyCH4V	TGCA	1 cut(s)	28
HpyF10VI	GCNNNNNNNGC	1 cut(s)	292
HpySE526I	ACGT	3 cut(s)	153, 192, 221
Hsp92II	CATG	1 cut(s)	303
KroI	GCCGGC	1 cut(s)	95
KroNI	GCCGGC	1 cut(s)	97
Ksp22I	TGATCA	2 cut(s)	234, 322
Kzo9I	GATC	5 cut(s)	38, 234, 253, 268, 322
LguI	GCTCTTC	1 cut(s)	329
LpnPI	CCDG	8 cut(s)	51, 75, 86, 109, 113, 210, 242, 264
LweI	GCATC	1 cut(s)	15
MaeII	ACGT	3 cut(s)	153, 192, 221
MaeIII	GTNAC	2 cut(s)	149, 222
MalI	GATC	5 cut(s)	40, 236, 255, 270, 324
MboI	GATC	5 cut(s)	38, 234, 253, 268, 322
MboII	GAAGA	2 cut(s)	81, 346
MflI	RGATCY	1 cut(s)	38
MluCI	AATT	2 cut(s)	276, 347
MlyI	GAGTC	1 cut(s)	308
MmeI	TCCRAC	1 cut(s)	242
MnlI	CCTC	3 cut(s)	105, 128, 297
Mph1103I	ATGCAT	1 cut(s)	30
MroNI	GCCGGC	1 cut(s)	95
MroXI	GAANNNNTTC	1 cut(s)	338
MseI	TTAA	1 cut(s)	305
MspI	CCGG	1 cut(s)	96
MspR9I	CCNGG	1 cut(s)	101
MvaI	CCWGG	1 cut(s)	101
MwoI	GCNNNNNNNGC	1 cut(s)	292
NaeI	GCCGGC	1 cut(s)	97
NdeII	GATC	5 cut(s)	38, 234, 253, 268, 322
NgoMIV	GCCGGC	1 cut(s)	95
NlaIII	CATG	1 cut(s)	303
NlaIV	GGNNCC	1 cut(s)	94
NsiI	ATGCAT	1 cut(s)	30
NspV	TTCGAA	1 cut(s)	142
PciSI	GCTCTTC	1 cut(s)	329
PcsI	WCGNNNNNNNCGW	1 cut(s)	139
PdiI	GCCGGC	1 cut(s)	97
PdmI	GAANNNNTTC	1 cut(s)	338
PleI	GAGTC	1 cut(s)	308
PpsI	GAGTC	1 cut(s)	308
Ppu21I	YACGTR	1 cut(s)	154
Psp1406I	AACGTT	1 cut(s)	221
Psp6I	CCWGG	1 cut(s)	99
PspFI	CCCAGC	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	99
PspN4I	GGNNCC	1 cut(s)	94
PspPI	GGNCC	2 cut(s)	93, 284
PstNI	CAGNNNCTG	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	38
RigI	GGCCGGCC	1 cut(s)	99
RsaI	GTAC	2 cut(s)	156, 188
RsaNI	GTAC	2 cut(s)	155, 187
SapI	GCTCTTC	1 cut(s)	329
SaqAI	TTAA	1 cut(s)	305
Sau3AI	GATC	5 cut(s)	38, 234, 253, 268, 322
Sau96I	GGNCC	2 cut(s)	93, 284
ScaI	AGTACT	1 cut(s)	188
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	1 cut(s)	101
SetI	ASST	7 cut(s)	116, 151, 156, 160, 195, 224, 341
SfaNI	GCATC	1 cut(s)	15
SfuI	TTCGAA	1 cut(s)	142
SnaBI	TACGTA	1 cut(s)	154
Sse9I	AATT	2 cut(s)	276, 347
StyD4I	CCNGG	1 cut(s)	99
TaiI	ACGT	3 cut(s)	156, 195, 224
TaqI	TCGA	3 cut(s)	12, 86, 142
TasI	AATT	2 cut(s)	276, 347
TatI	WGTACW	1 cut(s)	186
Tru1I	TTAA	1 cut(s)	305
Tru9I	TTAA	1 cut(s)	305
TspDTI	ATGAA	1 cut(s)	109
XmnI	GAANNNNTTC	1 cut(s)	338
ZrmI	AGTACT	1 cut(s)	188
Zsp2I	ATGCAT	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.