Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001295

Physical Location & Seq

Genomic Coordinates Forward (+)

18966838 .. 18967203

Gene Structure 366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G131500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGAGCCCTGCTGCAAGTCTTGTCCAGCAGAAAATCAGGCTGTTCGTCAAGAAATTAGGCAAAGGTTTCCATTCCAAGAACACATACACAAAGTTGGAGCATGCCTCTGAGAGCTCCAAGAATAAGCATAAGCATGGAGATATTCAAGTAGCTCCAAAAGGTTATGTGTTTTTGTATGTGGGGGAAGAGCGAAAGCGGTATACAGTTTCTTTGAAGTGTCTCTCTTGTCCAGCTTTCGAAGAAGCGATGGTCGAGTCGCAGCCGGATGTGTTCGATGTCAAGATTGAAGGGCCTATTGAGCTTTTATCGTGTACAACCGAGGACTTTCATAAGCTGATGTCGAAGATCAAGAAGGAGGGTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

122

Amino Acids

13.71

Weight (kDa)

9.1

Isoelectric Point (pI)

57.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001295)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12051 FvH4_5g32781 FvH4_6g21652
prunus_persica	Prupe.1G235700_v2.0.a1 Prupe.2G131400_v2.0.a1 Prupe.2G131500_v2.0.a1 Prupe.2G131600_v2.0.a1 Prupe.8G072300_v2.0.a1 Prupe.8G072400_v2.0.a1
rosa_laevigata	RLG00000023594 RLG00000023595 RLG00000023596
rosa_multiflora	Rmu_sc0000382.1_g000036 Rmu_sc0000382.1_g000038 Rmu_sc0002978.1_g000014 Rmu_sc0002978.1_g000017 Rmu_sc0002978.1_g000018 Rmu_sc0002978.1_g000021 Rmu_sc0015470.1_g000003 Rmu_sc0015470.1_g000005 Rmu_sc0015470.1_g000006 Rmu_sc0015470.1_g000008
rosa_roxburghii	Rroxscaffold_1G00044700 Rroxscaffold_6G00402540 Rroxscaffold_6G00402550 Rroxscaffold_6G00402560
rosa_rugosa	Rorug03G0172000 Rorug03G0172100 Rorug03G0172200.1 Rorug03G0172500 Rorug05G0152100 Rorug05G0152300
rosa_samantha	Rh1BG192300 Rh1DG220700 Rh3AG223400 Rh3AG223500 Rh3AG223800 Rh3BG256100 Rh3BG256200 Rh3BG256300 Rh3BG256600 Rh3CG252100 Rh3CG252200 Rh3CG252300 Rh3CG252400 Rh3DG248300 Rh3DG248400 Rh3DG248500 Rh3DG248600 Rh5BG246800 Rh5CG277900 Rh5DG255400
rosa_wichuraiana	Rw3G020040 Rw3G020050 Rw3G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	200
AciI	CCGC	1 cut(s)	196
AfaI	GTAC	1 cut(s)	313
AgsI	TTSAA	3 cut(s)	146, 214, 287
AluBI	AGCT	5 cut(s)	114, 152, 233, 301, 334
AluI	AGCT	5 cut(s)	114, 152, 233, 301, 334
Alw21I	GWGCWC	1 cut(s)	116
Alw26I	GTCTC	1 cut(s)	224
AoxI	GGCC	1 cut(s)	290
ApeKI	GCWGC	2 cut(s)	11, 259
AspS9I	GGNCC	1 cut(s)	290
AsuII	TTCGAA	1 cut(s)	237
BanII	GRGCYC	2 cut(s)	8, 116
Bbv12I	GWGCWC	1 cut(s)	116
BbvI	GCAGC	1 cut(s)	271
BccI	CCATC	1 cut(s)	241
BcoDI	GTCTC	1 cut(s)	224
BisI	GCNGC	2 cut(s)	12, 260
BlsI	GCNGC	2 cut(s)	13, 261
BmgT120I	GGNCC	1 cut(s)	290
BplI	GAGNNNNNCTC	2 cut(s)	89, 121
Bpu14I	TTCGAA	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	318
BseDI	CCNNGG	1 cut(s)	318
BseGI	GGATG	1 cut(s)	271
BseMII	CTCAG	1 cut(s)	99
BseXI	GCAGC	1 cut(s)	271
BshFI	GGCC	1 cut(s)	292
BsiHKAI	GWGCWC	1 cut(s)	116
BsiSI	CCGG	1 cut(s)	263
BsmAI	GTCTC	1 cut(s)	224
BsnI	GGCC	1 cut(s)	292
Bsp119I	TTCGAA	1 cut(s)	237
Bsp1286I	GDGCHC	2 cut(s)	8, 116
Bsp1407I	TGTACA	1 cut(s)	311
Bsp143I	GATC	1 cut(s)	345
BspACI	CCGC	1 cut(s)	196
BspANI	GGCC	1 cut(s)	292
BspCNI	CTCAG	1 cut(s)	100
BspQI	GCTCTTC	1 cut(s)	180
BspT104I	TTCGAA	1 cut(s)	237
BsrGI	TGTACA	1 cut(s)	311
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	1 cut(s)	345
BssNAI	GTATAC	1 cut(s)	201
Bst1107I	GTATAC	1 cut(s)	201
Bst4CI	ACNGT	1 cut(s)	205
Bst6I	CTCTTC	1 cut(s)	180
BstAUI	TGTACA	1 cut(s)	311
BstBI	TTCGAA	1 cut(s)	237
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	271
BstKTI	GATC	1 cut(s)	348
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	1 cut(s)	345
BstMWI	GCNNNNNNNGC	1 cut(s)	298
BstNSI	RCATGY	1 cut(s)	104
BstV1I	GCAGC	1 cut(s)	271
BstZ17I	GTATAC	1 cut(s)	201
BsuRI	GGCC	1 cut(s)	292
BtgZI	GCGATG	1 cut(s)	260
BtsCI	GGATG	1 cut(s)	271
Cac8I	GCNNGC	1 cut(s)	102
Cfr13I	GGNCC	1 cut(s)	290
Csp6I	GTAC	1 cut(s)	312
CviAII	CATG	2 cut(s)	101, 134
CviJI	RGCY	9 cut(s)	6, 40, 114, 152, 233, 262, 292, 301, 334
CviKI_1	RGCY	9 cut(s)	6, 40, 114, 152, 233, 262, 292, 301, 334
CviQI	GTAC	1 cut(s)	312
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	1 cut(s)	347
DpnII	GATC	1 cut(s)	345
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Ecl136II	GAGCTC	1 cut(s)	114
Eco24I	GRGCYC	2 cut(s)	8, 116
Eco53kI	GAGCTC	1 cut(s)	114
EcoICRI	GAGCTC	1 cut(s)	114
EcoO109I	RGGNCCY	1 cut(s)	290
EcoT38I	GRGCYC	2 cut(s)	8, 116
FaeI	CATG	2 cut(s)	104, 137
FaiI	YATR	8 cut(s)	85, 102, 129, 135, 165, 177, 201, 330
FatI	CATG	2 cut(s)	100, 133
FblI	GTMKAC	1 cut(s)	200
Fnu4HI	GCNGC	2 cut(s)	12, 260
FokI	GGATG	1 cut(s)	278
FriOI	GRGCYC	2 cut(s)	8, 116
Fsp4HI	GCNGC	2 cut(s)	12, 260
GluI	GCNGC	2 cut(s)	12, 260
HaeIII	GGCC	1 cut(s)	292
HapII	CCGG	1 cut(s)	263
Hin1II	CATG	2 cut(s)	104, 137
HinfI	GANTC	1 cut(s)	254
HpaII	CCGG	1 cut(s)	263
Hpy166II	GTNNAC	2 cut(s)	201, 312
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	3 cut(s)	49, 280, 349
Hpy8I	GTNNAC	2 cut(s)	201, 312
HpyAV	CCTTC	2 cut(s)	281, 346
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4V	TGCA	1 cut(s)	14
HpyF10VI	GCNNNNNNNGC	1 cut(s)	298
HpyF3I	CTNAG	1 cut(s)	108
Hsp92II	CATG	2 cut(s)	104, 137
Kzo9I	GATC	1 cut(s)	345
LguI	GCTCTTC	1 cut(s)	180
LmnI	GCTCC	3 cut(s)	97, 119, 157
LpnPI	CCDG	5 cut(s)	21, 22, 38, 243, 276
Lsp1109I	GCAGC	1 cut(s)	271
MalI	GATC	1 cut(s)	347
MboI	GATC	1 cut(s)	345
MboII	GAAGA	3 cut(s)	197, 251, 355
MhlI	GDGCHC	2 cut(s)	8, 116
MluCI	AATT	1 cut(s)	53
MlyI	GAGTC	1 cut(s)	263
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	3 cut(s)	115, 313, 349
MslI	CAYNNNNRTG	1 cut(s)	132
MspI	CCGG	1 cut(s)	263
MwoI	GCNNNNNNNGC	1 cut(s)	298
NdeII	GATC	1 cut(s)	345
NlaIII	CATG	2 cut(s)	104, 137
NspI	RCATGY	1 cut(s)	104
NspV	TTCGAA	1 cut(s)	237
PaeI	GCATGC	1 cut(s)	104
PciSI	GCTCTTC	1 cut(s)	180
PkrI	GCNGC	2 cut(s)	13, 261
PleI	GAGTC	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	262
Psp124BI	GAGCTC	1 cut(s)	116
PspPI	GGNCC	1 cut(s)	290
RsaI	GTAC	1 cut(s)	313
RsaNI	GTAC	1 cut(s)	312
RseI	CAYNNNNRTG	1 cut(s)	132
SacI	GAGCTC	1 cut(s)	116
SapI	GCTCTTC	1 cut(s)	180
SatI	GCNGC	2 cut(s)	12, 260
Sau3AI	GATC	1 cut(s)	345
Sau96I	GGNCC	1 cut(s)	290
SchI	GAGTC	1 cut(s)	263
SduI	GDGCHC	2 cut(s)	8, 116
SetI	ASST	7 cut(s)	67, 116, 154, 163, 235, 303, 336
SfuI	TTCGAA	1 cut(s)	237
SmiMI	CAYNNNNRTG	1 cut(s)	132
SphI	GCATGC	1 cut(s)	104
Sse9I	AATT	1 cut(s)	53
SsiI	CCGC	1 cut(s)	196
SstI	GAGCTC	1 cut(s)	116
TaaI	ACNGT	1 cut(s)	205
TaqI	TCGA	4 cut(s)	237, 252, 273, 341
TasI	AATT	1 cut(s)	53
TatI	WGTACW	1 cut(s)	311
TseI	GCWGC	2 cut(s)	11, 259
TspDTI	ATGAA	1 cut(s)	317
XceI	RCATGY	1 cut(s)	104
XmiI	GTMKAC	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.