Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001295

Physical Location & Seq

Genomic Coordinates Reverse (-)

14548539 .. 14549840

Gene Structure 1302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0172100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGCCGATCCGGAATATTGCCGTGGGCCGACCCGAGGAAGCTTACAACCCGGACGCCCTCAAGGCCGCGCTTGCCGAGTTCTTCTCCACTCTCATCTTCGTCTTCGCCGGCGAAGGCTCCGGCATGGCCTTCAACAAACTCACCGACAACGGCTCCACCACTCCCGCCGGACTCGTTGCCGCTGCCCTCGCTCACGCCTTTGGTCTTTTTGTCGCCGTCGCAATCGCCGCCAACATCTCCGGCGGACACGTCAACCCCGCCGTCACCTTCGGCGCCTTCGTCGGAGGTAACATCTCTCTCCTACGTGGCCTCCTCTACTGGGTCGCTCAGCTCCTCGGATCAACCGTCGCTTGCTTGCTTCTCAAGTTGGCCACCAACGGCCAGACCACCTCTGCTTTTGCTCTGTCCTCCGGAGTTGGTGTGTGGAACGCGTTCGTATTCGAGATAGTGATGACGTTCGGGCTGGTGTACACCGTCTACGCCACCGCCGTTGACCCCAAGAGGGGGAACGTGGGAACAATCGCGCCCATCGCGATTGGTTTCATCGTTGGCGCCAATATTTTGGCGGGTGGGGCATTCGACGGAGCCTCCATGAACCCGGCCGTGTCTTTCGGACCGGCTTTGGTGAGCTGGAGCTGGCAGAACCACTGGGTCTACTGGGCCGGACCTTTGATCGGCGGCGGTATCGCCGGGCTTGTTTATGAGTTCTTCTTCATCAGCCACAGCGGCCACGAGCCACTGGCCGGCAGTGAATACGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

253

Amino Acids

26.08

Weight (kDa)

5.64

Isoelectric Point (pI)

26.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	16 - 234	3.9e-80	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001295)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12051 FvH4_5g32781 FvH4_6g21652
prunus_persica	Prupe.1G235700_v2.0.a1 Prupe.2G131400_v2.0.a1 Prupe.2G131500_v2.0.a1 Prupe.2G131600_v2.0.a1 Prupe.8G072300_v2.0.a1 Prupe.8G072400_v2.0.a1
rosa_laevigata	RLG00000023594 RLG00000023595 RLG00000023596
rosa_multiflora	Rmu_sc0000382.1_g000036 Rmu_sc0000382.1_g000038 Rmu_sc0002978.1_g000014 Rmu_sc0002978.1_g000017 Rmu_sc0002978.1_g000018 Rmu_sc0002978.1_g000021 Rmu_sc0015470.1_g000003 Rmu_sc0015470.1_g000005 Rmu_sc0015470.1_g000006 Rmu_sc0015470.1_g000008
rosa_roxburghii	Rroxscaffold_1G00044700 Rroxscaffold_6G00402540 Rroxscaffold_6G00402550 Rroxscaffold_6G00402560
rosa_rugosa	Rorug03G0172000 Rorug03G0172100 Rorug03G0172200.1 Rorug03G0172500 Rorug05G0152100 Rorug05G0152300
rosa_samantha	Rh1BG192300 Rh1DG220700 Rh3AG223400 Rh3AG223500 Rh3AG223800 Rh3BG256100 Rh3BG256200 Rh3BG256300 Rh3BG256600 Rh3CG252100 Rh3CG252200 Rh3CG252300 Rh3CG252400 Rh3DG248300 Rh3DG248400 Rh3DG248500 Rh3DG248600 Rh5BG246800 Rh5CG277900 Rh5DG255400
rosa_wichuraiana	Rw3G020040 Rw3G020050 Rw3G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	272, 551
AccI	GTMKAC	2 cut(s)	477, 654
AccII	CGCG	4 cut(s)	68, 431, 524, 533
AccIII	TCCGGA	2 cut(s)	9, 410
AclWI	GGATC	1 cut(s)	346
AcoI	YGGCCR	5 cut(s)	369, 379, 600, 727, 741
AcyI	GRCGYC	3 cut(s)	54, 273, 552
AfaI	GTAC	1 cut(s)	470
AfiI	CCNNNNNNNGG	7 cut(s)	34, 319, 502, 503, 504, 674, 743
AflIII	ACRYGT	2 cut(s)	247, 429
AgsI	TTSAA	1 cut(s)	133
AjiI	CACGTC	1 cut(s)	250
AluBI	AGCT	4 cut(s)	41, 331, 630, 636
AluI	AGCT	4 cut(s)	41, 331, 630, 636
AlwI	GGATC	1 cut(s)	346
Ama87I	CYCGRG	1 cut(s)	32
Aor13HI	TCCGGA	2 cut(s)	9, 410
ApeKI	GCWGC	1 cut(s)	182
Asp700I	GAANNNNTTC	1 cut(s)	431
AspLEI	GCGC	4 cut(s)	70, 275, 526, 554
AspS9I	GGNCC	4 cut(s)	25, 614, 660, 665
AsuC2I	CCSGG	3 cut(s)	50, 599, 691
AsuHPI	GGTGA	3 cut(s)	133, 256, 637
AvaI	CYCGRG	1 cut(s)	32
AvaII	GGWCC	2 cut(s)	614, 665
BalI	TGGCCA	1 cut(s)	371
BanI	GGYRCC	2 cut(s)	272, 551
BauI	CACGAG	1 cut(s)	731
BbsI	GAAGAC	1 cut(s)	94
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	1 cut(s)	536
BceAI	ACGGC	7 cut(s)	5, 166, 200, 245, 394, 473, 587
BcnI	CCSGG	3 cut(s)	50, 599, 691
BfaI	CTAG	1 cut(s)	760
BfoI	RGCGCY	2 cut(s)	276, 555
BglI	GCCNNNNNGGC	2 cut(s)	62, 726
BisI	GCNGC	6 cut(s)	66, 180, 183, 228, 679, 727
BlpI	GCTNAGC	1 cut(s)	327
BlsI	GCNGC	6 cut(s)	67, 181, 184, 229, 680, 728
Bme1390I	CCNGG	3 cut(s)	50, 599, 691
Bme18I	GGWCC	2 cut(s)	614, 665
BmeT110I	CYCGRG	1 cut(s)	32
BmgBI	CACGTC	1 cut(s)	250
BmgT120I	GGNCC	4 cut(s)	25, 614, 660, 665
BmiI	GGNNCC	5 cut(s)	118, 154, 274, 553, 586
BmrFI	CCNGG	3 cut(s)	50, 599, 691
BmrI	ACTGGG	3 cut(s)	328, 658, 667
BmuI	ACTGGG	3 cut(s)	328, 658, 667
BpiI	GAAGAC	1 cut(s)	94
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
BpmI	CTGGAG	1 cut(s)	652
Bpu1102I	GCTNAGC	1 cut(s)	327
BpuEI	CTTGAG	2 cut(s)	44, 347
BpuMI	CCSGG	3 cut(s)	50, 599, 691
BsaAI	YACGTR	1 cut(s)	305
BsaHI	GRCGYC	3 cut(s)	54, 273, 552
BsaJI	CCNNGG	3 cut(s)	21, 33, 334
BsaWI	WCCGGW	2 cut(s)	9, 410
BsaXI	ACNNNNNCTCC	8 cut(s)	137, 167, 294, 324, 405, 435, 572, 602
Bsc4I	CCNNNNNNNGG	7 cut(s)	34, 319, 502, 503, 504, 674, 743
Bse118I	RCCGGY	3 cut(s)	107, 616, 743
Bse1I	ACTGG	4 cut(s)	323, 653, 662, 744
BseAI	TCCGGA	2 cut(s)	9, 410
BseDI	CCNNGG	3 cut(s)	21, 33, 334
BseLI	CCNNNNNNNGG	7 cut(s)	34, 319, 502, 503, 504, 674, 743
BseMII	CTCAG	1 cut(s)	341
BseNI	ACTGG	4 cut(s)	323, 653, 662, 744
BseRI	GAGGAG	2 cut(s)	302, 323
BseX3I	CGGCCG	1 cut(s)	600
BseXI	GCAGC	1 cut(s)	169
Bsh1236I	CGCG	4 cut(s)	68, 431, 524, 533
Bsh1285I	CGRYCG	1 cut(s)	603
BshNI	GGYRCC	2 cut(s)	272, 551
BsiEI	CGRYCG	1 cut(s)	603
BsiHKCI	CYCGRG	1 cut(s)	32
BslI	CCNNNNNNNGG	7 cut(s)	34, 319, 502, 503, 504, 674, 743
BsmI	GAATGC	1 cut(s)	575
BsoBI	CYCGRG	1 cut(s)	32
Bsp13I	TCCGGA	2 cut(s)	9, 410
Bsp1407I	TGTACA	1 cut(s)	468
Bsp143I	GATC	3 cut(s)	6, 338, 672
Bsp1720I	GCTNAGC	1 cut(s)	327
Bsp68I	TCGCGA	1 cut(s)	533
BspCNI	CTCAG	1 cut(s)	340
BspEI	TCCGGA	2 cut(s)	9, 410
BspFNI	CGCG	4 cut(s)	68, 431, 524, 533
BspLI	GGNNCC	5 cut(s)	118, 154, 274, 553, 586
BspPI	GGATC	1 cut(s)	346
BspT107I	GGYRCC	2 cut(s)	272, 551
BsrFI	RCCGGY	3 cut(s)	107, 616, 743
BsrGI	TGTACA	1 cut(s)	468
BsrI	ACTGG	4 cut(s)	323, 653, 662, 744
BssAI	RCCGGY	3 cut(s)	107, 616, 743
BssECI	CCNNGG	3 cut(s)	21, 33, 334
BssMI	GATC	3 cut(s)	6, 338, 672
BssNI	GRCGYC	3 cut(s)	54, 273, 552
BssSI	CACGAG	1 cut(s)	731
Bst2BI	CACGAG	1 cut(s)	731
Bst4CI	ACNGT	2 cut(s)	346, 475
BstACI	GRCGYC	3 cut(s)	54, 273, 552
BstAUI	TGTACA	1 cut(s)	468
BstBAI	YACGTR	1 cut(s)	305
BstC8I	GCNNGC	6 cut(s)	72, 109, 352, 356, 638, 745
BstDEI	CTNAG	1 cut(s)	327
BstDSI	CCRYGG	1 cut(s)	21
BstFNI	CGCG	4 cut(s)	68, 431, 524, 533
BstH2I	RGCGCY	2 cut(s)	276, 555
BstHHI	GCGC	4 cut(s)	70, 275, 526, 554
BstKTI	GATC	3 cut(s)	9, 341, 675
BstMBI	GATC	3 cut(s)	6, 338, 672
BstMCI	CGRYCG	1 cut(s)	603
BstMWI	GCNNNNNNNGC	7 cut(s)	62, 71, 188, 227, 530, 572, 726
BstSCI	CCNGG	3 cut(s)	48, 597, 689
BstUI	CGCG	4 cut(s)	68, 431, 524, 533
BstV1I	GCAGC	1 cut(s)	169
BstV2I	GAAGAC	1 cut(s)	94
BstXI	CCANNNNNNTGG	1 cut(s)	562
BstZI	CGGCCG	1 cut(s)	600
BtgI	CCRYGG	1 cut(s)	21
BtgZI	GCGATG	1 cut(s)	514
BtrI	CACGTC	1 cut(s)	250
BtsI	GCAGTG	1 cut(s)	754
BtsIMutI	CAGTG	3 cut(s)	646, 737, 754
BtuMI	TCGCGA	1 cut(s)	533
Cac8I	GCNNGC	6 cut(s)	72, 109, 352, 356, 638, 745
CfoI	GCGC	4 cut(s)	70, 275, 526, 554
Cfr10I	RCCGGY	3 cut(s)	107, 616, 743
Cfr13I	GGNCC	4 cut(s)	25, 614, 660, 665
CpoI	CGGWCCG	1 cut(s)	614
CseI	GACGC	1 cut(s)	62
Csp6I	GTAC	1 cut(s)	469
CspCI	CAANNNNNGTGG	2 cut(s)	472, 507
CspI	CGGWCCG	1 cut(s)	614
CviAII	CATG	2 cut(s)	124, 592
CviQI	GTAC	1 cut(s)	469
DdeI	CTNAG	1 cut(s)	327
DinI	GGCGCC	2 cut(s)	274, 553
DpnI	GATC	3 cut(s)	8, 340, 674
DpnII	GATC	3 cut(s)	6, 338, 672
EaeI	YGGCCR	5 cut(s)	369, 379, 600, 727, 741
EagI	CGGCCG	1 cut(s)	600
EciI	GGCGGA	1 cut(s)	258
EclXI	CGGCCG	1 cut(s)	600
Eco47I	GGWCC	2 cut(s)	614, 665
Eco52I	CGGCCG	1 cut(s)	600
Eco88I	CYCGRG	1 cut(s)	32
EgeI	GGCGCC	2 cut(s)	274, 553
EheI	GGCGCC	2 cut(s)	274, 553
FaeI	CATG	2 cut(s)	127, 595
FaiI	YATR	3 cut(s)	125, 593, 702
FatI	CATG	2 cut(s)	123, 591
FauI	CCCGC	3 cut(s)	172, 265, 559
FblI	GTMKAC	2 cut(s)	477, 654
Fnu4HI	GCNGC	6 cut(s)	66, 180, 183, 228, 679, 727
Fsp4HI	GCNGC	6 cut(s)	66, 180, 183, 228, 679, 727
FspBI	CTAG	1 cut(s)	760
GlaI	GCGC	4 cut(s)	69, 274, 525, 553
GluI	GCNGC	6 cut(s)	66, 180, 183, 228, 679, 727
GsuI	CTGGAG	1 cut(s)	652
HaeII	RGCGCY	2 cut(s)	276, 555
HgaI	GACGC	1 cut(s)	62
HhaI	GCGC	4 cut(s)	70, 275, 526, 554
Hin1I	GRCGYC	3 cut(s)	54, 273, 552
Hin1II	CATG	2 cut(s)	127, 595
Hin6I	GCGC	4 cut(s)	68, 273, 524, 552
HinP1I	GCGC	4 cut(s)	68, 273, 524, 552
HincII	GTYRAC	2 cut(s)	253, 493
HindII	GTYRAC	2 cut(s)	253, 493
HindIII	AAGCTT	1 cut(s)	39
HinfI	GANTC	1 cut(s)	171
HphI	GGTGA	3 cut(s)	133, 256, 637
Hpy166II	GTNNAC	6 cut(s)	253, 469, 471, 478, 493, 655
Hpy188I	TCNGA	3 cut(s)	284, 338, 614
Hpy188III	TCNNGA	4 cut(s)	10, 411, 442, 532
Hpy8I	GTNNAC	6 cut(s)	253, 469, 471, 478, 493, 655
Hpy99I	CGWCG	4 cut(s)	221, 284, 350, 584
HpyAV	CCTTC	4 cut(s)	107, 139, 277, 286
HpyCH4III	ACNGT	2 cut(s)	346, 475
HpyCH4IV	ACGT	4 cut(s)	249, 304, 455, 510
HpyF10VI	GCNNNNNNNGC	7 cut(s)	62, 71, 188, 227, 530, 572, 726
HpyF3I	CTNAG	1 cut(s)	327
HpySE526I	ACGT	4 cut(s)	249, 304, 455, 510
Hsp92I	GRCGYC	3 cut(s)	54, 273, 552
Hsp92II	CATG	2 cut(s)	127, 595
HspAI	GCGC	4 cut(s)	68, 273, 524, 552
KasI	GGCGCC	2 cut(s)	272, 551
Kpn2I	TCCGGA	2 cut(s)	9, 410
KroI	GCCGGC	2 cut(s)	107, 743
KroNI	GCCGGC	2 cut(s)	109, 745
Kzo9I	GATC	3 cut(s)	6, 338, 672
LmnI	GCTCC	5 cut(s)	122, 158, 336, 584, 633
Lsp1109I	GCAGC	1 cut(s)	169
MaeI	CTAG	1 cut(s)	760
MaeII	ACGT	4 cut(s)	249, 304, 455, 510
MaeIII	GTNAC	2 cut(s)	262, 287
MalI	GATC	3 cut(s)	8, 340, 674
MboI	GATC	3 cut(s)	6, 338, 672
MboII	GAAGA	5 cut(s)	73, 88, 94, 700, 703
MlsI	TGGCCA	1 cut(s)	371
MluI	ACGCGT	1 cut(s)	429
MluNI	TGGCCA	1 cut(s)	371
Mly113I	GGCGCC	2 cut(s)	273, 552
MlyI	GAGTC	1 cut(s)	165
MmeI	TCCRAC	1 cut(s)	262
Mox20I	TGGCCA	1 cut(s)	371
MreI	CGCCGGCG	1 cut(s)	107
MroI	TCCGGA	2 cut(s)	9, 410
MroNI	GCCGGC	2 cut(s)	107, 743
MroXI	GAANNNNTTC	1 cut(s)	431
MscI	TGGCCA	1 cut(s)	371
Msp20I	TGGCCA	1 cut(s)	371
MspA1I	CMGCKG	2 cut(s)	182, 726
MspR9I	CCNGG	3 cut(s)	50, 599, 691
Mva1269I	GAATGC	1 cut(s)	575
MvnI	CGCG	4 cut(s)	68, 431, 524, 533
MwoI	GCNNNNNNNGC	7 cut(s)	62, 71, 188, 227, 530, 572, 726
NaeI	GCCGGC	2 cut(s)	109, 745
NarI	GGCGCC	2 cut(s)	273, 552
NciI	CCSGG	3 cut(s)	50, 599, 691
NdeII	GATC	3 cut(s)	6, 338, 672
NgoMIV	GCCGGC	2 cut(s)	107, 743
NlaIII	CATG	2 cut(s)	127, 595
NlaIV	GGNNCC	5 cut(s)	118, 154, 274, 553, 586
NmeAIII	GCCGAG	1 cut(s)	100
NmuCI	GTSAC	1 cut(s)	262
NruI	TCGCGA	1 cut(s)	533
PcsI	WCGNNNNNNNCGW	3 cut(s)	276, 342, 486
PctI	GAATGC	1 cut(s)	575
PdiI	GCCGGC	2 cut(s)	109, 745
PdmI	GAANNNNTTC	1 cut(s)	431
PkrI	GCNGC	6 cut(s)	67, 181, 184, 229, 680, 728
PleI	GAGTC	1 cut(s)	165
PluTI	GGCGCC	2 cut(s)	276, 555
PpsI	GAGTC	1 cut(s)	165
Ppu21I	YACGTR	1 cut(s)	305
PspN4I	GGNNCC	5 cut(s)	118, 154, 274, 553, 586
PspPI	GGNCC	4 cut(s)	25, 614, 660, 665
RruI	TCGCGA	1 cut(s)	533
RsaI	GTAC	1 cut(s)	470
RsaNI	GTAC	1 cut(s)	469
Rsr2I	CGGWCCG	1 cut(s)	614
RsrII	CGGWCCG	1 cut(s)	614
SatI	GCNGC	6 cut(s)	66, 180, 183, 228, 679, 727
Sau3AI	GATC	3 cut(s)	6, 338, 672
Sau96I	GGNCC	4 cut(s)	25, 614, 660, 665
SchI	GAGTC	1 cut(s)	165
ScrFI	CCNGG	3 cut(s)	50, 599, 691
SfoI	GGCGCC	2 cut(s)	274, 553
SgrAI	CRCCGGYG	1 cut(s)	107
SinI	GGWCC	2 cut(s)	614, 665
SmlI	CTYRAG	2 cut(s)	59, 362
SmoI	CTYRAG	2 cut(s)	59, 362
SspDI	GGCGCC	2 cut(s)	272, 551
SspI	AATATT	2 cut(s)	16, 559
SspMI	CTAG	1 cut(s)	760
StyD4I	CCNGG	3 cut(s)	48, 597, 689
TaaI	ACNGT	2 cut(s)	346, 475
TaiI	ACGT	4 cut(s)	252, 307, 458, 513
TaqI	TCGA	2 cut(s)	441, 579
TatI	WGTACW	1 cut(s)	468
TauI	GCSGC	5 cut(s)	68, 182, 230, 681, 729
TscAI	CASTG	3 cut(s)	653, 744, 754
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	1 cut(s)	182
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	3 cut(s)	532, 608, 703
TspGWI	ACGGA	1 cut(s)	597
TspRI	CASTG	3 cut(s)	653, 744, 754
VpaK11BI	GGWCC	2 cut(s)	614, 665
XmiI	GTMKAC	2 cut(s)	477, 654
XmnI	GAANNNNTTC	1 cut(s)	431
XspI	CTAG	1 cut(s)	760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.