Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001295

Physical Location & Seq

Genomic Coordinates Forward (+)

23669696 .. 23670162

Gene Structure 467 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g32781.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGAAGTTCATGAATCTTGCAAGTCTTATCAATAAGCTGGGAAGAAGCCACTCCAAGAAGGCGTACGAACAGTTGGTTCATGAAGATCATGACCAGACCCAGAGGACGTCCAAGAAGAAGCATGGTTCATCTCCCAAAGTTTCGTCGACGTTCGATGTATATGTGGGCAAAGAGAGCAAGAAATACCCAGTTCCCCACGAGTACCGTCTACACCCAAAGCTGCAAGAACTCATCCAGAAGTACCGAGAATTCGTGTTGGATCCAAGATCTAGTGATCCGATCGTGCTTGAATGTTCTACGGAGACCTTCGAACAGTACTTTCTCCGTTATGTCGTCAAGAATCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

116

Amino Acids

13.63

Weight (kDa)

9.52

Isoelectric Point (pI)

41.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	32 - 106	2.2e-10	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001295)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12051 FvH4_5g32781 FvH4_6g21652
prunus_persica	Prupe.1G235700_v2.0.a1 Prupe.2G131400_v2.0.a1 Prupe.2G131500_v2.0.a1 Prupe.2G131600_v2.0.a1 Prupe.8G072300_v2.0.a1 Prupe.8G072400_v2.0.a1
rosa_laevigata	RLG00000023594 RLG00000023595 RLG00000023596
rosa_multiflora	Rmu_sc0000382.1_g000036 Rmu_sc0000382.1_g000038 Rmu_sc0002978.1_g000014 Rmu_sc0002978.1_g000017 Rmu_sc0002978.1_g000018 Rmu_sc0002978.1_g000021 Rmu_sc0015470.1_g000003 Rmu_sc0015470.1_g000005 Rmu_sc0015470.1_g000006 Rmu_sc0015470.1_g000008
rosa_roxburghii	Rroxscaffold_1G00044700 Rroxscaffold_6G00402540 Rroxscaffold_6G00402550 Rroxscaffold_6G00402560
rosa_rugosa	Rorug03G0172000 Rorug03G0172100 Rorug03G0172200.1 Rorug03G0172500 Rorug05G0152100 Rorug05G0152300
rosa_samantha	Rh1BG192300 Rh1DG220700 Rh3AG223400 Rh3AG223500 Rh3AG223800 Rh3BG256100 Rh3BG256200 Rh3BG256300 Rh3BG256600 Rh3CG252100 Rh3CG252200 Rh3CG252300 Rh3CG252400 Rh3DG248300 Rh3DG248400 Rh3DG248500 Rh3DG248600 Rh5BG246800 Rh5CG277900 Rh5DG255400
rosa_wichuraiana	Rw3G020040 Rw3G020050 Rw3G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	110
AccI	GTMKAC	2 cut(s)	146, 208
AclWI	GGATC	3 cut(s)	254, 267, 269
AcsI	RAATTY	1 cut(s)	248
AcyI	GRCGYC	1 cut(s)	107
AfaI	GTAC	4 cut(s)	65, 203, 242, 317
AgsI	TTSAA	1 cut(s)	290
AluBI	AGCT	2 cut(s)	37, 220
AluI	AGCT	2 cut(s)	37, 220
Alw26I	GTCTC	1 cut(s)	296
AlwI	GGATC	3 cut(s)	254, 267, 269
ApeKI	GCWGC	1 cut(s)	220
ApoI	RAATTY	1 cut(s)	248
AsuII	TTCGAA	1 cut(s)	309
BamHI	GGATCC	1 cut(s)	259
BauI	CACGAG	1 cut(s)	197
BbvI	GCAGC	1 cut(s)	207
BcoDI	GTCTC	1 cut(s)	296
BfaI	CTAG	1 cut(s)	270
BglII	AGATCT	1 cut(s)	266
BisI	GCNGC	1 cut(s)	221
BlsI	GCNGC	1 cut(s)	222
BmcAI	AGTACT	1 cut(s)	317
BmiI	GGNNCC	1 cut(s)	261
BmrI	ACTGGG	1 cut(s)	182
BmuI	ACTGGG	1 cut(s)	182
Bpu14I	TTCGAA	1 cut(s)	309
Bsa29I	ATCGAT	1 cut(s)	343
BsaHI	GRCGYC	1 cut(s)	107
BsaI	GGTCTC	1 cut(s)	296
Bse1I	ACTGG	1 cut(s)	188
BseCI	ATCGAT	1 cut(s)	343
BseGI	GGATG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	188
BseXI	GCAGC	1 cut(s)	207
BseYI	CCCAGC	1 cut(s)	37
Bsh1285I	CGRYCG	1 cut(s)	282
BshVI	ATCGAT	1 cut(s)	343
BsiEI	CGRYCG	1 cut(s)	282
BsiWI	CGTACG	1 cut(s)	63
BsmAI	GTCTC	1 cut(s)	296
Bso31I	GGTCTC	1 cut(s)	296
Bsp119I	TTCGAA	1 cut(s)	309
Bsp143I	GATC	5 cut(s)	85, 259, 266, 274, 279
BspDI	ATCGAT	1 cut(s)	343
BspHI	TCATGA	3 cut(s)	9, 79, 88
BspLI	GGNNCC	1 cut(s)	261
BspPI	GGATC	3 cut(s)	254, 267, 269
BspT104I	TTCGAA	1 cut(s)	309
BspTNI	GGTCTC	1 cut(s)	296
BsrI	ACTGG	1 cut(s)	188
BssMI	GATC	5 cut(s)	85, 259, 266, 274, 279
BssNI	GRCGYC	1 cut(s)	107
BssSI	CACGAG	1 cut(s)	197
Bst2BI	CACGAG	1 cut(s)	197
Bst4CI	ACNGT	3 cut(s)	72, 206, 315
BstACI	GRCGYC	1 cut(s)	107
BstBI	TTCGAA	1 cut(s)	309
BstF5I	GGATG	1 cut(s)	231
BstKTI	GATC	5 cut(s)	88, 262, 269, 277, 282
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	5 cut(s)	85, 259, 266, 274, 279
BstMCI	CGRYCG	1 cut(s)	282
BstMWI	GCNNNNNNNGC	1 cut(s)	174
BstV1I	GCAGC	1 cut(s)	207
BstX2I	RGATCY	2 cut(s)	259, 266
BstYI	RGATCY	2 cut(s)	259, 266
Bsu15I	ATCGAT	1 cut(s)	343
BsuTUI	ATCGAT	1 cut(s)	343
BtsCI	GGATG	1 cut(s)	231
CciI	TCATGA	3 cut(s)	9, 79, 88
ClaI	ATCGAT	1 cut(s)	343
Csp6I	GTAC	4 cut(s)	64, 202, 241, 316
CviAII	CATG	4 cut(s)	10, 80, 89, 122
CviJI	RGCY	3 cut(s)	37, 48, 220
CviKI_1	RGCY	3 cut(s)	37, 48, 220
CviQI	GTAC	4 cut(s)	64, 202, 241, 316
DpnI	GATC	5 cut(s)	87, 261, 268, 276, 281
DpnII	GATC	5 cut(s)	85, 259, 266, 274, 279
Eco31I	GGTCTC	1 cut(s)	296
EcoRI	GAATTC	1 cut(s)	248
FaeI	CATG	4 cut(s)	13, 83, 92, 125
FaiI	YATR	7 cut(s)	11, 81, 90, 123, 160, 162, 330
FatI	CATG	4 cut(s)	9, 79, 88, 121
FblI	GTMKAC	2 cut(s)	146, 208
Fnu4HI	GCNGC	1 cut(s)	221
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	1 cut(s)	221
FspBI	CTAG	1 cut(s)	270
GluI	GCNGC	1 cut(s)	221
GsaI	CCCAGC	1 cut(s)	41
Hin1I	GRCGYC	1 cut(s)	107
Hin1II	CATG	4 cut(s)	13, 83, 92, 125
HincII	GTYRAC	1 cut(s)	147
HindII	GTYRAC	1 cut(s)	147
HinfI	GANTC	2 cut(s)	13, 340
Hpy166II	GTNNAC	2 cut(s)	147, 209
Hpy188I	TCNGA	1 cut(s)	279
Hpy188III	TCNNGA	5 cut(s)	10, 80, 89, 235, 337
Hpy8I	GTNNAC	2 cut(s)	147, 209
Hpy99I	CGWCG	2 cut(s)	148, 151
HpyAV	CCTTC	2 cut(s)	52, 316
HpyCH4III	ACNGT	3 cut(s)	72, 206, 315
HpyCH4IV	ACGT	2 cut(s)	107, 149
HpyCH4V	TGCA	2 cut(s)	20, 223
HpyF10VI	GCNNNNNNNGC	1 cut(s)	174
HpySE526I	ACGT	2 cut(s)	107, 149
Hsp92I	GRCGYC	1 cut(s)	107
Hsp92II	CATG	4 cut(s)	13, 83, 92, 125
Kzo9I	GATC	5 cut(s)	85, 259, 266, 274, 279
LpnPI	CCDG	5 cut(s)	23, 107, 113, 201, 248
Lsp1109I	GCAGC	1 cut(s)	207
MaeI	CTAG	1 cut(s)	270
MaeII	ACGT	2 cut(s)	107, 149
MalI	GATC	5 cut(s)	87, 261, 268, 276, 281
MboI	GATC	5 cut(s)	85, 259, 266, 274, 279
MboII	GAAGA	3 cut(s)	54, 95, 127
MflI	RGATCY	2 cut(s)	259, 266
MluCI	AATT	1 cut(s)	248
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	1 cut(s)	96
MwoI	GCNNNNNNNGC	1 cut(s)	174
NdeII	GATC	5 cut(s)	85, 259, 266, 274, 279
NlaIII	CATG	4 cut(s)	13, 83, 92, 125
NlaIV	GGNNCC	1 cut(s)	261
NspV	TTCGAA	1 cut(s)	309
PagI	TCATGA	3 cut(s)	9, 79, 88
PfeI	GAWTC	2 cut(s)	13, 340
Pfl23II	CGTACG	1 cut(s)	63
PkrI	GCNGC	1 cut(s)	222
Ple19I	CGATCG	1 cut(s)	282
PspFI	CCCAGC	1 cut(s)	37
PspLI	CGTACG	1 cut(s)	63
PspN4I	GGNNCC	1 cut(s)	261
PsuI	RGATCY	2 cut(s)	259, 266
PvuI	CGATCG	1 cut(s)	282
RsaI	GTAC	4 cut(s)	65, 203, 242, 317
RsaNI	GTAC	4 cut(s)	64, 202, 241, 316
SalI	GTCGAC	1 cut(s)	145
SatI	GCNGC	1 cut(s)	221
Sau3AI	GATC	5 cut(s)	85, 259, 266, 274, 279
ScaI	AGTACT	1 cut(s)	317
SetI	ASST	5 cut(s)	39, 110, 152, 222, 308
SfuI	TTCGAA	1 cut(s)	309
SgrDI	CGTCGACG	1 cut(s)	145
Sse9I	AATT	1 cut(s)	248
SspMI	CTAG	1 cut(s)	270
TaaI	ACNGT	3 cut(s)	72, 206, 315
TaiI	ACGT	2 cut(s)	110, 152
TaqI	TCGA	4 cut(s)	146, 153, 309, 343
TasI	AATT	1 cut(s)	248
TatI	WGTACW	1 cut(s)	315
TfiI	GAWTC	2 cut(s)	13, 340
TseI	GCWGC	1 cut(s)	220
TspDTI	ATGAA	5 cut(s)	17, 26, 68, 96, 117
TspGWI	ACGGA	2 cut(s)	314, 314
XapI	RAATTY	1 cut(s)	248
XmiI	GTMKAC	2 cut(s)	146, 208
XspI	CTAG	1 cut(s)	270
ZraI	GACGTC	1 cut(s)	108
ZrmI	AGTACT	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.