Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001295

Physical Location & Seq

Genomic Coordinates Forward (+)

14569395 .. 14569607

Gene Structure 213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0172500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGCAAAAAGCTGAATTCTCCCTCCATCCCCTTGGTTCTCTCCTCAAGGGTTGCTCAAATATTATGGATGCTATGGAAAATGCTCACCTTTCTCACATCTTCAGAGAGTGCAATATGACTGCTGACTGCTTGGCTAAGGACAACATCAATCATGAGCTTGGTACCATCATCTTTGAGTACCCCCCCTATTCATGCTGCTCAGGCCTATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

70

Amino Acids

7.76

Weight (kDa)

5.33

Isoelectric Point (pI)

38.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	9 - 47	1e-05	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001295)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12051 FvH4_5g32781 FvH4_6g21652
prunus_persica	Prupe.1G235700_v2.0.a1 Prupe.2G131400_v2.0.a1 Prupe.2G131500_v2.0.a1 Prupe.2G131600_v2.0.a1 Prupe.8G072300_v2.0.a1 Prupe.8G072400_v2.0.a1
rosa_laevigata	RLG00000023594 RLG00000023595 RLG00000023596
rosa_multiflora	Rmu_sc0000382.1_g000036 Rmu_sc0000382.1_g000038 Rmu_sc0002978.1_g000014 Rmu_sc0002978.1_g000017 Rmu_sc0002978.1_g000018 Rmu_sc0002978.1_g000021 Rmu_sc0015470.1_g000003 Rmu_sc0015470.1_g000005 Rmu_sc0015470.1_g000006 Rmu_sc0015470.1_g000008
rosa_roxburghii	Rroxscaffold_1G00044700 Rroxscaffold_6G00402540 Rroxscaffold_6G00402550 Rroxscaffold_6G00402560
rosa_rugosa	Rorug03G0172000 Rorug03G0172100 Rorug03G0172200.1 Rorug03G0172500 Rorug05G0152100 Rorug05G0152300
rosa_samantha	Rh1BG192300 Rh1DG220700 Rh3AG223400 Rh3AG223500 Rh3AG223800 Rh3BG256100 Rh3BG256200 Rh3BG256300 Rh3BG256600 Rh3CG252100 Rh3CG252200 Rh3CG252300 Rh3CG252400 Rh3DG248300 Rh3DG248400 Rh3DG248500 Rh3DG248600 Rh5BG246800 Rh5CG277900 Rh5DG255400
rosa_wichuraiana	Rw3G020040 Rw3G020050 Rw3G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	161
AccB1I	GGYRCC	1 cut(s)	161
AcsI	RAATTY	1 cut(s)	14
AcuI	CTGAAG	1 cut(s)	85
AfaI	GTAC	2 cut(s)	163, 179
AluBI	AGCT	2 cut(s)	11, 157
AluI	AGCT	2 cut(s)	11, 157
AoxI	GGCC	1 cut(s)	202
ApeKI	GCWGC	1 cut(s)	195
ApoI	RAATTY	1 cut(s)	14
Asp718I	GGTACC	1 cut(s)	161
AsuHPI	GGTGA	1 cut(s)	77
BanI	GGYRCC	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	182
BccI	CCATC	2 cut(s)	33, 173
BisI	GCNGC	1 cut(s)	196
BlsI	GCNGC	1 cut(s)	197
BmiI	GGNNCC	1 cut(s)	163
BmsI	GCATC	1 cut(s)	58
Bpu10I	CCTNAGC	2 cut(s)	135, 199
BpuEI	CTTGAG	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	31
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	2 cut(s)	25, 73
BseMII	CTCAG	1 cut(s)	213
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	182
BshFI	GGCC	1 cut(s)	204
BshNI	GGYRCC	1 cut(s)	161
BsnI	GGCC	1 cut(s)	204
BspANI	GGCC	1 cut(s)	204
BspCNI	CTCAG	1 cut(s)	212
BspHI	TCATGA	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	163
BspT107I	GGYRCC	1 cut(s)	161
BssECI	CCNNGG	1 cut(s)	31
BssT1I	CCWWGG	1 cut(s)	31
BstDEI	CTNAG	2 cut(s)	135, 199
BstF5I	GGATG	2 cut(s)	25, 73
BstMWI	GCNNNNNNNGC	1 cut(s)	201
BstV1I	GCAGC	1 cut(s)	182
BstXI	CCANNNNNNTGG	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	204
BtsCI	GGATG	2 cut(s)	25, 73
CciI	TCATGA	1 cut(s)	151
Csp6I	GTAC	2 cut(s)	162, 178
CviAII	CATG	2 cut(s)	152, 192
CviJI	RGCY	4 cut(s)	11, 134, 157, 204
CviKI_1	RGCY	4 cut(s)	11, 134, 157, 204
CviQI	GTAC	2 cut(s)	162, 178
DdeI	CTNAG	2 cut(s)	135, 199
Eco130I	CCWWGG	1 cut(s)	31
Eco147I	AGGCCT	1 cut(s)	204
Eco57I	CTGAAG	1 cut(s)	85
EcoRI	GAATTC	1 cut(s)	14
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	2 cut(s)	155, 195
FaiI	YATR	5 cut(s)	65, 74, 116, 153, 193
FatI	CATG	2 cut(s)	151, 191
Fnu4HI	GCNGC	1 cut(s)	196
FokI	GGATG	2 cut(s)	12, 80
Fsp4HI	GCNGC	1 cut(s)	196
GluI	GCNGC	1 cut(s)	196
HaeIII	GGCC	1 cut(s)	204
Hin1II	CATG	2 cut(s)	155, 195
HphI	GGTGA	1 cut(s)	77
Hpy188I	TCNGA	1 cut(s)	104
Hpy188III	TCNNGA	2 cut(s)	152, 210
HpyCH4V	TGCA	2 cut(s)	4, 111
HpyF10VI	GCNNNNNNNGC	1 cut(s)	201
HpyF3I	CTNAG	2 cut(s)	135, 199
Hsp92II	CATG	2 cut(s)	155, 195
KpnI	GGTACC	1 cut(s)	165
LpnPI	CCDG	1 cut(s)	186
Lsp1109I	GCAGC	1 cut(s)	182
LweI	GCATC	1 cut(s)	58
MboII	GAAGA	1 cut(s)	91
MluCI	AATT	1 cut(s)	14
MnlI	CCTC	2 cut(s)	32, 53
MwoI	GCNNNNNNNGC	1 cut(s)	201
NlaIII	CATG	2 cut(s)	155, 195
NlaIV	GGNNCC	1 cut(s)	163
PagI	TCATGA	1 cut(s)	151
PceI	AGGCCT	1 cut(s)	204
PkrI	GCNGC	1 cut(s)	197
PspN4I	GGNNCC	1 cut(s)	163
RsaI	GTAC	2 cut(s)	163, 179
RsaNI	GTAC	2 cut(s)	162, 178
SatI	GCNGC	1 cut(s)	196
SetI	ASST	3 cut(s)	13, 90, 159
SfaNI	GCATC	1 cut(s)	58
SgeI	CNNG	6 cut(s)	44, 58, 142, 164, 170, 204
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	1 cut(s)	14
SseBI	AGGCCT	1 cut(s)	204
SspI	AATATT	1 cut(s)	61
StuI	AGGCCT	1 cut(s)	204
StyI	CCWWGG	1 cut(s)	31
TasI	AATT	1 cut(s)	14
TseI	GCWGC	1 cut(s)	195
TspDTI	ATGAA	1 cut(s)	180
XapI	RAATTY	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.