Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001295

Physical Location & Seq

Genomic Coordinates Reverse (-)

24986764 .. 24987826

Gene Structure 1063 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00402550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGAGGTTCATGAATCCTGCATCTCTTATCAACAAGCTAGGAAGAAGCCACTCCAAGAAGTCATACGAACGGTTAGAACATGCAGATGACCAGGTCGAGAGGTCCAAGAAGAAGCATGGTTCAGCTCCGAAAGGTTCTATAGATTTGTTTGTGGGCAAAGAGGAGAAGAAATACCCAGTTCCCCTCAAGTACTTTTCACACCCAAAGCTCCAAGAACTACTCAAGCAGTACCAAGAACCCGTGTTCGATCCAAGATTTGATGAGCCGATTGTGCTTGAATATTGTTCTACGGAGACCTTTGAGCAGTTGCTCCATTATATCGTCAAGACTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

111

Amino Acids

13.1

Weight (kDa)

8.93

Isoelectric Point (pI)

41.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	24 - 106	4.4e-11	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001295)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12051 FvH4_5g32781 FvH4_6g21652
prunus_persica	Prupe.1G235700_v2.0.a1 Prupe.2G131400_v2.0.a1 Prupe.2G131500_v2.0.a1 Prupe.2G131600_v2.0.a1 Prupe.8G072300_v2.0.a1 Prupe.8G072400_v2.0.a1
rosa_laevigata	RLG00000023594 RLG00000023595 RLG00000023596
rosa_multiflora	Rmu_sc0000382.1_g000036 Rmu_sc0000382.1_g000038 Rmu_sc0002978.1_g000014 Rmu_sc0002978.1_g000017 Rmu_sc0002978.1_g000018 Rmu_sc0002978.1_g000021 Rmu_sc0015470.1_g000003 Rmu_sc0015470.1_g000005 Rmu_sc0015470.1_g000006 Rmu_sc0015470.1_g000008
rosa_roxburghii	Rroxscaffold_1G00044700 Rroxscaffold_6G00402540 Rroxscaffold_6G00402550 Rroxscaffold_6G00402560
rosa_rugosa	Rorug03G0172000 Rorug03G0172100 Rorug03G0172200.1 Rorug03G0172500 Rorug05G0152100 Rorug05G0152300
rosa_samantha	Rh1BG192300 Rh1DG220700 Rh3AG223400 Rh3AG223500 Rh3AG223800 Rh3BG256100 Rh3BG256200 Rh3BG256300 Rh3BG256600 Rh3CG252100 Rh3CG252200 Rh3CG252300 Rh3CG252400 Rh3DG248300 Rh3DG248400 Rh3DG248500 Rh3DG248600 Rh5BG246800 Rh5CG277900 Rh5DG255400
rosa_wichuraiana	Rw3G020040 Rw3G020050 Rw3G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	242
AfaI	GTAC	2 cut(s)	191, 230
AgsI	TTSAA	1 cut(s)	278
AjnI	CCWGG	1 cut(s)	90
AluBI	AGCT	3 cut(s)	37, 125, 208
AluI	AGCT	3 cut(s)	37, 125, 208
Alw26I	GTCTC	1 cut(s)	287
AlwI	GGATC	1 cut(s)	242
AspS9I	GGNCC	1 cut(s)	102
AvaII	GGWCC	1 cut(s)	102
BciT130I	CCWGG	1 cut(s)	92
BcoDI	GTCTC	1 cut(s)	287
BfaI	CTAG	1 cut(s)	38
BfmI	CTRYAG	1 cut(s)	138
BmcAI	AGTACT	1 cut(s)	191
Bme1390I	CCNGG	1 cut(s)	92
Bme18I	GGWCC	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	102
BmrFI	CCNGG	1 cut(s)	92
BmrI	ACTGGG	1 cut(s)	170
BmsI	GCATC	1 cut(s)	29
BmuI	ACTGGG	1 cut(s)	170
BpuEI	CTTGAG	2 cut(s)	170, 206
BsaI	GGTCTC	1 cut(s)	287
Bse1I	ACTGG	1 cut(s)	176
BseBI	CCWGG	1 cut(s)	92
BseNI	ACTGG	1 cut(s)	176
BseRI	GAGGAG	1 cut(s)	176
BsmAI	GTCTC	1 cut(s)	287
Bso31I	GGTCTC	1 cut(s)	287
Bsp143I	GATC	1 cut(s)	247
BspHI	TCATGA	1 cut(s)	9
BspPI	GGATC	1 cut(s)	242
BspTNI	GGTCTC	1 cut(s)	287
BsrI	ACTGG	1 cut(s)	176
BssMI	GATC	1 cut(s)	247
Bst2UI	CCWGG	1 cut(s)	92
Bst4CI	ACNGT	1 cut(s)	72
BstKTI	GATC	1 cut(s)	250
BstMAI	GTCTC	1 cut(s)	287
BstMBI	GATC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	1 cut(s)	271
BstNI	CCWGG	1 cut(s)	92
BstNSI	RCATGY	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	90
BstSFI	CTRYAG	1 cut(s)	138
CciI	TCATGA	1 cut(s)	9
Cfr13I	GGNCC	1 cut(s)	102
CsiI	ACCWGGT	1 cut(s)	90
Csp6I	GTAC	2 cut(s)	190, 229
CviAII	CATG	3 cut(s)	10, 80, 116
CviJI	RGCY	5 cut(s)	37, 48, 125, 208, 265
CviKI_1	RGCY	5 cut(s)	37, 48, 125, 208, 265
CviQI	GTAC	2 cut(s)	190, 229
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
Eco31I	GGTCTC	1 cut(s)	287
Eco47I	GGWCC	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	90
FaeI	CATG	3 cut(s)	13, 83, 119
FaiI	YATR	6 cut(s)	11, 64, 81, 117, 140, 318
FatI	CATG	3 cut(s)	9, 79, 115
FspBI	CTAG	1 cut(s)	38
Hin1II	CATG	3 cut(s)	13, 83, 119
HinfI	GANTC	2 cut(s)	13, 328
Hpy188I	TCNGA	1 cut(s)	129
Hpy188III	TCNNGA	3 cut(s)	10, 97, 325
HpyCH4III	ACNGT	1 cut(s)	72
HpyCH4V	TGCA	2 cut(s)	20, 83
HpyF10VI	GCNNNNNNNGC	1 cut(s)	271
Hsp92II	CATG	3 cut(s)	13, 83, 119
Kzo9I	GATC	1 cut(s)	247
LmnI	GCTCC	3 cut(s)	130, 213, 315
LpnPI	CCDG	4 cut(s)	30, 77, 104, 189
LweI	GCATC	1 cut(s)	29
MabI	ACCWGGT	1 cut(s)	90
MaeI	CTAG	1 cut(s)	38
MalI	GATC	1 cut(s)	249
MboI	GATC	1 cut(s)	247
MboII	GAAGA	3 cut(s)	54, 121, 178
MlyI	GAGTC	1 cut(s)	322
MnlI	CCTC	3 cut(s)	93, 154, 194
MslI	CAYNNNNRTG	1 cut(s)	84
MspR9I	CCNGG	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	92
MwoI	GCNNNNNNNGC	1 cut(s)	271
NdeII	GATC	1 cut(s)	247
NlaIII	CATG	3 cut(s)	13, 83, 119
NspI	RCATGY	1 cut(s)	83
PagI	TCATGA	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	13
PflFI	GACNNNGTC	1 cut(s)	92
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PspPI	GGNCC	1 cut(s)	102
PsyI	GACNNNGTC	1 cut(s)	92
RsaI	GTAC	2 cut(s)	191, 230
RsaNI	GTAC	2 cut(s)	190, 229
RseI	CAYNNNNRTG	1 cut(s)	84
Sau3AI	GATC	1 cut(s)	247
Sau96I	GGNCC	1 cut(s)	102
ScaI	AGTACT	1 cut(s)	191
SchI	GAGTC	1 cut(s)	322
ScrFI	CCNGG	1 cut(s)	92
SetI	ASST	8 cut(s)	8, 39, 96, 104, 127, 136, 210, 299
SexAI	ACCWGGT	1 cut(s)	90
SfaNI	GCATC	1 cut(s)	29
SfcI	CTRYAG	1 cut(s)	138
SinI	GGWCC	1 cut(s)	102
SmiMI	CAYNNNNRTG	1 cut(s)	84
SmlI	CTYRAG	2 cut(s)	185, 221
SmoI	CTYRAG	2 cut(s)	185, 221
SspI	AATATT	1 cut(s)	281
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	90
TaaI	ACNGT	1 cut(s)	72
TaqI	TCGA	2 cut(s)	96, 246
TatI	WGTACW	1 cut(s)	189
TfiI	GAWTC	1 cut(s)	13
TspDTI	ATGAA	1 cut(s)	26
TspGWI	ACGGA	1 cut(s)	305
Tth111I	GACNNNGTC	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	102
XceI	RCATGY	1 cut(s)	83
XspI	CTAG	1 cut(s)	38
ZrmI	AGTACT	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.