Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000382.1

Orthogroup ID

OG0001295

Physical Location & Seq

Genomic Coordinates Forward (+)

192617 .. 194019

Gene Structure 1403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000382.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atggttgggactattgggctcgagtttggatgttgggttccttgttggctggatattgggctgcaaggggtctcttgctgggctgaggctaattggaacttctccattggggcagctctgatggatgaaaatggagtggatggtgatatatcatcctctactccaaatagcaccatgaatcttttcgaaaaagtcaggttgttcatcaagaagcaacgaggatttcgaaaaggttacgtacctttgctcatcggcaaagaaagaaagaagtactacgttcctgtgaagtatctatcctatccaacgttacaagaactgatcatcaagaaccaaccagatcaggatatatatgatccaagaattgaagggcctcttgggcttccatgtttaagagccgactcgtttgaccagttgctgaagagcttcaagaaattgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

145

Amino Acids

16.45

Weight (kDa)

8.31

Isoelectric Point (pI)

32.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001295)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12051 FvH4_5g32781 FvH4_6g21652
prunus_persica	Prupe.1G235700_v2.0.a1 Prupe.2G131400_v2.0.a1 Prupe.2G131500_v2.0.a1 Prupe.2G131600_v2.0.a1 Prupe.8G072300_v2.0.a1 Prupe.8G072400_v2.0.a1
rosa_laevigata	RLG00000023594 RLG00000023595 RLG00000023596
rosa_multiflora	Rmu_sc0000382.1_g000036 Rmu_sc0000382.1_g000038 Rmu_sc0002978.1_g000014 Rmu_sc0002978.1_g000017 Rmu_sc0002978.1_g000018 Rmu_sc0002978.1_g000021 Rmu_sc0015470.1_g000003 Rmu_sc0015470.1_g000005 Rmu_sc0015470.1_g000006 Rmu_sc0015470.1_g000008
rosa_roxburghii	Rroxscaffold_1G00044700 Rroxscaffold_6G00402540 Rroxscaffold_6G00402550 Rroxscaffold_6G00402560
rosa_rugosa	Rorug03G0172000 Rorug03G0172100 Rorug03G0172200.1 Rorug03G0172500 Rorug05G0152100 Rorug05G0152300
rosa_samantha	Rh1BG192300 Rh1DG220700 Rh3AG223400 Rh3AG223500 Rh3AG223800 Rh3BG256100 Rh3BG256200 Rh3BG256300 Rh3BG256600 Rh3CG252100 Rh3CG252200 Rh3CG252300 Rh3CG252400 Rh3DG248300 Rh3DG248400 Rh3DG248500 Rh3DG248600 Rh5BG246800 Rh5CG277900 Rh5DG255400
rosa_wichuraiana	Rw3G020040 Rw3G020050 Rw3G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	305
AclWI	GGATC	1 cut(s)	347
AcuI	CTGAAG	1 cut(s)	437
AfaI	GTAC	2 cut(s)	240, 272
AgsI	TTSAA	2 cut(s)	365, 427
AjuI	GAANNNNNNNTTGG	2 cut(s)	357, 389
AloI	GAACNNNNNNTCC	2 cut(s)	21, 53
AluBI	AGCT	2 cut(s)	116, 423
AluI	AGCT	2 cut(s)	116, 423
Alw26I	GTCTC	1 cut(s)	76
AlwI	GGATC	1 cut(s)	347
AlwNI	CAGNNNCTG	1 cut(s)	415
Ama87I	CYCGRG	1 cut(s)	20
AoxI	GGCC	1 cut(s)	368
ApeKI	GCWGC	2 cut(s)	61, 113
Asp700I	GAANNNNTTC	2 cut(s)	182, 422
AspS9I	GGNCC	1 cut(s)	368
AsuHPI	GGTGA	1 cut(s)	155
AsuII	TTCGAA	2 cut(s)	186, 226
AvaI	CYCGRG	1 cut(s)	20
BanII	GRGCYC	1 cut(s)	21
BbvCI	CCTCAGC	1 cut(s)	84
BbvI	GCAGC	2 cut(s)	48, 125
BccI	CCATC	2 cut(s)	115, 134
BclI	TGATCA	1 cut(s)	318
BcoDI	GTCTC	1 cut(s)	76
BglI	GCCNNNNNGGC	1 cut(s)	376
BisI	GCNGC	2 cut(s)	62, 114
BlsI	GCNGC	2 cut(s)	63, 115
BmcAI	AGTACT	1 cut(s)	272
BmeT110I	CYCGRG	1 cut(s)	20
BmgT120I	GGNCC	1 cut(s)	368
BmiI	GGNNCC	1 cut(s)	39
Bpu10I	CCTNAGC	1 cut(s)	84
Bpu14I	TTCGAA	2 cut(s)	186, 226
BsaAI	YACGTR	1 cut(s)	238
BsaI	GGTCTC	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	409
BseGI	GGATG	4 cut(s)	35, 130, 145, 152
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	1 cut(s)	409
BseXI	GCAGC	2 cut(s)	48, 125
BseYI	CCCAGC	1 cut(s)	78
BshFI	GGCC	1 cut(s)	370
BsiHKCI	CYCGRG	1 cut(s)	20
BslFI	GGGAC	1 cut(s)	22
BsmAI	GTCTC	1 cut(s)	76
BsmFI	GGGAC	1 cut(s)	22
BsnI	GGCC	1 cut(s)	370
Bso31I	GGTCTC	1 cut(s)	76
BsoBI	CYCGRG	1 cut(s)	20
Bsp119I	TTCGAA	2 cut(s)	186, 226
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	3 cut(s)	318, 337, 352
BspANI	GGCC	1 cut(s)	370
BspCNI	CTCAG	1 cut(s)	76
BspLI	GGNNCC	1 cut(s)	39
BspPI	GGATC	1 cut(s)	347
BspQI	GCTCTTC	1 cut(s)	413
BspT104I	TTCGAA	2 cut(s)	186, 226
BspTNI	GGTCTC	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	409
BssMI	GATC	3 cut(s)	318, 337, 352
Bst6I	CTCTTC	1 cut(s)	413
BstBAI	YACGTR	1 cut(s)	238
BstBI	TTCGAA	2 cut(s)	186, 226
BstDEI	CTNAG	1 cut(s)	84
BstF5I	GGATG	4 cut(s)	35, 130, 145, 152
BstKTI	GATC	3 cut(s)	321, 340, 355
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	3 cut(s)	318, 337, 352
BstMWI	GCNNNNNNNGC	1 cut(s)	376
BstSNI	TACGTA	1 cut(s)	238
BstV1I	GCAGC	2 cut(s)	48, 125
BsuRI	GGCC	1 cut(s)	370
BtsCI	GGATG	4 cut(s)	35, 130, 145, 152
CaiI	CAGNNNCTG	1 cut(s)	415
Cfr13I	GGNCC	1 cut(s)	368
Csp6I	GTAC	2 cut(s)	239, 271
CviAII	CATG	2 cut(s)	175, 384
CviQI	GTAC	2 cut(s)	239, 271
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	3 cut(s)	320, 339, 354
DpnII	GATC	3 cut(s)	318, 337, 352
Eam1104I	CTCTTC	1 cut(s)	413
EarI	CTCTTC	1 cut(s)	413
Eco105I	TACGTA	1 cut(s)	238
Eco24I	GRGCYC	1 cut(s)	21
Eco31I	GGTCTC	1 cut(s)	76
Eco57I	CTGAAG	1 cut(s)	437
Eco88I	CYCGRG	1 cut(s)	20
EcoO109I	RGGNCCY	1 cut(s)	368
EcoT38I	GRGCYC	1 cut(s)	21
FaeI	CATG	2 cut(s)	178, 387
FaiI	YATR	6 cut(s)	149, 176, 347, 349, 351, 385
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	2 cut(s)	174, 383
FbaI	TGATCA	1 cut(s)	318
Fnu4HI	GCNGC	2 cut(s)	62, 114
FokI	GGATG	4 cut(s)	42, 137, 139, 152
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	2 cut(s)	62, 114
GluI	GCNGC	2 cut(s)	62, 114
GsaI	CCCAGC	1 cut(s)	82
HaeIII	GGCC	1 cut(s)	370
Hin1II	CATG	2 cut(s)	178, 387
HinfI	GANTC	2 cut(s)	178, 398
HphI	GGTGA	1 cut(s)	155
Hpy188I	TCNGA	1 cut(s)	120
Hpy188III	TCNNGA	4 cut(s)	208, 325, 341, 427
HpyAV	CCTTC	1 cut(s)	359
HpyCH4IV	ACGT	3 cut(s)	237, 276, 305
HpyCH4V	TGCA	1 cut(s)	64
HpyF10VI	GCNNNNNNNGC	1 cut(s)	376
HpyF3I	CTNAG	1 cut(s)	84
HpySE526I	ACGT	3 cut(s)	237, 276, 305
Hsp92II	CATG	2 cut(s)	178, 387
Ksp22I	TGATCA	1 cut(s)	318
Kzo9I	GATC	3 cut(s)	318, 337, 352
LguI	GCTCTTC	1 cut(s)	413
LpnPI	CCDG	7 cut(s)	35, 64, 181, 294, 326, 348, 422
Lsp1109I	GCAGC	2 cut(s)	48, 125
MaeII	ACGT	3 cut(s)	237, 276, 305
MaeIII	GTNAC	2 cut(s)	233, 306
MalI	GATC	3 cut(s)	320, 339, 354
MboI	GATC	3 cut(s)	318, 337, 352
MboII	GAAGA	1 cut(s)	430
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	3 cut(s)	91, 360, 431
MlyI	GAGTC	1 cut(s)	392
MmeI	TCCRAC	1 cut(s)	326
MnlI	CCTC	4 cut(s)	79, 166, 212, 381
MroXI	GAANNNNTTC	2 cut(s)	182, 422
MseI	TTAA	1 cut(s)	389
MwoI	GCNNNNNNNGC	1 cut(s)	376
NdeII	GATC	3 cut(s)	318, 337, 352
NlaIII	CATG	2 cut(s)	178, 387
NlaIV	GGNNCC	1 cut(s)	39
NspV	TTCGAA	2 cut(s)	186, 226
PaeR7I	CTCGAG	1 cut(s)	20
PciSI	GCTCTTC	1 cut(s)	413
PcsI	WCGNNNNNNNCGW	1 cut(s)	223
PdmI	GAANNNNTTC	2 cut(s)	182, 422
PfeI	GAWTC	1 cut(s)	178
PkrI	GCNGC	2 cut(s)	63, 115
PleI	GAGTC	1 cut(s)	392
PpsI	GAGTC	1 cut(s)	392
Ppu21I	YACGTR	1 cut(s)	238
Psp1406I	AACGTT	1 cut(s)	305
PspFI	CCCAGC	1 cut(s)	78
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	1 cut(s)	368
PspXI	VCTCGAGB	1 cut(s)	20
PstNI	CAGNNNCTG	1 cut(s)	415
RsaI	GTAC	2 cut(s)	240, 272
RsaNI	GTAC	2 cut(s)	239, 271
SapI	GCTCTTC	1 cut(s)	413
SaqAI	TTAA	1 cut(s)	389
SatI	GCNGC	2 cut(s)	62, 114
Sau3AI	GATC	3 cut(s)	318, 337, 352
Sau96I	GGNCC	1 cut(s)	368
ScaI	AGTACT	1 cut(s)	272
SchI	GAGTC	1 cut(s)	392
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	8 cut(s)	118, 200, 235, 240, 244, 279, 308, 425
Sfr274I	CTCGAG	1 cut(s)	20
SfuI	TTCGAA	2 cut(s)	186, 226
SlaI	CTCGAG	1 cut(s)	20
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
SnaBI	TACGTA	1 cut(s)	238
Sse9I	AATT	3 cut(s)	91, 360, 431
TaiI	ACGT	3 cut(s)	240, 279, 308
TaqI	TCGA	3 cut(s)	21, 186, 226
TasI	AATT	3 cut(s)	91, 360, 431
TatI	WGTACW	1 cut(s)	270
TfiI	GAWTC	1 cut(s)	178
Tru1I	TTAA	1 cut(s)	389
Tru9I	TTAA	1 cut(s)	389
TseI	GCWGC	2 cut(s)	61, 113
TspDTI	ATGAA	3 cut(s)	141, 191, 193
XhoI	CTCGAG	1 cut(s)	20
XmnI	GAANNNNTTC	2 cut(s)	182, 422
ZrmI	AGTACT	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.