Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001295

Physical Location & Seq

Genomic Coordinates Reverse (-)

24984105 .. 24986724

Gene Structure 2620 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00402540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGTCAGTCAGGTTGTTCTTTACTACGATTTCAGGCATAGAAAAAGATTATGCACTTCATATCTCTATGGTTTCTCTCTTGAATTCCATACATCATCATTCCAAGCTAAGACTACCAGACTACATGATGTTCATGAATCCTGCATGTCTTATCAAGAAGGCATATGATCGTTTGGTACGTGAAGATGACCAGGTCAAGAGCTCCAAGAAGAAACATGGATCAACTCGTAAAGTTTCTATAGATTTGTTTGTGGGCAAAGAGGAGAAAAAATACTCTATTTCTCTCGAGTACTTTTTACACCCAAAGCTCCAAGAACTCCTCAAGGAGTACCGAGAACTCGTATTCGATCCAAGATGTAATGAGCCGATTGTGCTTGAATATTGTTCTACAGAGACCTTTGATCAATTACTCTATAATATCGCGATGGATATCGATAAGGAGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

148

Amino Acids

17.53

Weight (kDa)

7.01

Isoelectric Point (pI)

40.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	67 - 137	3.7e-06	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001295)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12051 FvH4_5g32781 FvH4_6g21652
prunus_persica	Prupe.1G235700_v2.0.a1 Prupe.2G131400_v2.0.a1 Prupe.2G131500_v2.0.a1 Prupe.2G131600_v2.0.a1 Prupe.8G072300_v2.0.a1 Prupe.8G072400_v2.0.a1
rosa_laevigata	RLG00000023594 RLG00000023595 RLG00000023596
rosa_multiflora	Rmu_sc0000382.1_g000036 Rmu_sc0000382.1_g000038 Rmu_sc0002978.1_g000014 Rmu_sc0002978.1_g000017 Rmu_sc0002978.1_g000018 Rmu_sc0002978.1_g000021 Rmu_sc0015470.1_g000003 Rmu_sc0015470.1_g000005 Rmu_sc0015470.1_g000006 Rmu_sc0015470.1_g000008
rosa_roxburghii	Rroxscaffold_1G00044700 Rroxscaffold_6G00402540 Rroxscaffold_6G00402550 Rroxscaffold_6G00402560
rosa_rugosa	Rorug03G0172000 Rorug03G0172100 Rorug03G0172200.1 Rorug03G0172500 Rorug05G0152100 Rorug05G0152300
rosa_samantha	Rh1BG192300 Rh1DG220700 Rh3AG223400 Rh3AG223500 Rh3AG223800 Rh3BG256100 Rh3BG256200 Rh3BG256300 Rh3BG256600 Rh3CG252100 Rh3CG252200 Rh3CG252300 Rh3CG252400 Rh3DG248300 Rh3DG248400 Rh3DG248500 Rh3DG248600 Rh5BG246800 Rh5CG277900 Rh5DG255400
rosa_wichuraiana	Rw3G020040 Rw3G020050 Rw3G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	422
AclWI	GGATC	2 cut(s)	226, 341
AcsI	RAATTY	1 cut(s)	82
AfaI	GTAC	3 cut(s)	177, 290, 329
AgsI	TTSAA	2 cut(s)	82, 377
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	3 cut(s)	106, 201, 307
AluI	AGCT	3 cut(s)	106, 201, 307
Alw21I	GWGCWC	1 cut(s)	203
Alw26I	GTCTC	1 cut(s)	386
AlwI	GGATC	2 cut(s)	226, 341
Ama87I	CYCGRG	1 cut(s)	284
ApoI	RAATTY	1 cut(s)	82
AvaI	CYCGRG	1 cut(s)	284
BanII	GRGCYC	1 cut(s)	203
Bbv12I	GWGCWC	1 cut(s)	203
BccI	CCATC	1 cut(s)	418
BciT130I	CCWGG	1 cut(s)	191
BclI	TGATCA	1 cut(s)	400
BcoDI	GTCTC	1 cut(s)	386
BfmI	CTRYAG	2 cut(s)	237, 387
BmcAI	AGTACT	1 cut(s)	290
Bme1390I	CCNGG	1 cut(s)	191
BmeT110I	CYCGRG	1 cut(s)	284
BmrFI	CCNGG	1 cut(s)	191
BpuEI	CTTGAG	1 cut(s)	305
Bsa29I	ATCGAT	1 cut(s)	432
BsaAI	YACGTR	1 cut(s)	179
BsaBI	GATNNNNATC	1 cut(s)	428
BsaI	GGTCTC	1 cut(s)	386
Bse8I	GATNNNNATC	1 cut(s)	428
BseBI	CCWGG	1 cut(s)	191
BseCI	ATCGAT	1 cut(s)	432
BseJI	GATNNNNATC	1 cut(s)	428
BseRI	GAGGAG	2 cut(s)	275, 308
Bsh1236I	CGCG	1 cut(s)	422
BshVI	ATCGAT	1 cut(s)	432
BsiHKAI	GWGCWC	1 cut(s)	203
BsiHKCI	CYCGRG	1 cut(s)	284
BsmAI	GTCTC	1 cut(s)	386
Bso31I	GGTCTC	1 cut(s)	386
BsoBI	CYCGRG	1 cut(s)	284
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp143I	GATC	4 cut(s)	166, 218, 346, 400
Bsp68I	TCGCGA	1 cut(s)	422
BspDI	ATCGAT	1 cut(s)	432
BspFNI	CGCG	1 cut(s)	422
BspHI	TCATGA	1 cut(s)	132
BspPI	GGATC	2 cut(s)	226, 341
BspTNI	GGTCTC	1 cut(s)	386
BssMI	GATC	4 cut(s)	166, 218, 346, 400
Bst2UI	CCWGG	1 cut(s)	191
BstBAI	YACGTR	1 cut(s)	179
BstDEI	CTNAG	1 cut(s)	107
BstFNI	CGCG	1 cut(s)	422
BstKTI	GATC	4 cut(s)	169, 221, 349, 403
BstMAI	GTCTC	1 cut(s)	386
BstMBI	GATC	4 cut(s)	166, 218, 346, 400
BstMWI	GCNNNNNNNGC	1 cut(s)	370
BstNI	CCWGG	1 cut(s)	191
BstNSI	RCATGY	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	189
BstSFI	CTRYAG	2 cut(s)	237, 387
BstUI	CGCG	1 cut(s)	422
Bsu15I	ATCGAT	1 cut(s)	432
BsuTUI	ATCGAT	1 cut(s)	432
BtgZI	GCGATG	1 cut(s)	437
BtuMI	TCGCGA	1 cut(s)	422
CciI	TCATGA	1 cut(s)	132
ClaI	ATCGAT	1 cut(s)	432
CsiI	ACCWGGT	1 cut(s)	189
Csp6I	GTAC	3 cut(s)	176, 289, 328
CviAII	CATG	4 cut(s)	124, 133, 144, 215
CviJI	RGCY	4 cut(s)	106, 201, 307, 364
CviKI_1	RGCY	4 cut(s)	106, 201, 307, 364
CviQI	GTAC	3 cut(s)	176, 289, 328
DdeI	CTNAG	1 cut(s)	107
DpnI	GATC	4 cut(s)	168, 220, 348, 402
DpnII	GATC	4 cut(s)	166, 218, 346, 400
Ecl136II	GAGCTC	1 cut(s)	201
Eco24I	GRGCYC	1 cut(s)	203
Eco31I	GGTCTC	1 cut(s)	386
Eco32I	GATATC	1 cut(s)	430
Eco53kI	GAGCTC	1 cut(s)	201
Eco88I	CYCGRG	1 cut(s)	284
EcoICRI	GAGCTC	1 cut(s)	201
EcoRI	GAATTC	1 cut(s)	82
EcoRII	CCWGG	1 cut(s)	189
EcoRV	GATATC	1 cut(s)	430
EcoT38I	GRGCYC	1 cut(s)	203
FaeI	CATG	4 cut(s)	127, 136, 147, 218
FatI	CATG	4 cut(s)	123, 132, 143, 214
FauNDI	CATATG	1 cut(s)	163
FbaI	TGATCA	1 cut(s)	400
FriOI	GRGCYC	1 cut(s)	203
Hin1II	CATG	4 cut(s)	127, 136, 147, 218
HinfI	GANTC	1 cut(s)	136
Hpy188III	TCNNGA	6 cut(s)	79, 133, 154, 196, 284, 421
HpyAV	CCTTC	1 cut(s)	151
HpyCH4IV	ACGT	1 cut(s)	178
HpyCH4V	TGCA	2 cut(s)	53, 143
HpyF10VI	GCNNNNNNNGC	1 cut(s)	370
HpyF3I	CTNAG	1 cut(s)	107
HpySE526I	ACGT	1 cut(s)	178
Hsp92II	CATG	4 cut(s)	127, 136, 147, 218
Ksp22I	TGATCA	1 cut(s)	400
Kzo9I	GATC	4 cut(s)	166, 218, 346, 400
LmnI	GCTCC	2 cut(s)	206, 312
LpnPI	CCDG	5 cut(s)	18, 129, 153, 176, 203
MabI	ACCWGGT	1 cut(s)	189
MaeII	ACGT	1 cut(s)	178
MalI	GATC	4 cut(s)	168, 220, 348, 402
MboI	GATC	4 cut(s)	166, 218, 346, 400
MboII	GAAGA	2 cut(s)	194, 220
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	2 cut(s)	82, 404
MnlI	CCTC	2 cut(s)	253, 329
MseI	TTAA	1 cut(s)	445
MspR9I	CCNGG	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	191
MvnI	CGCG	1 cut(s)	422
MwoI	GCNNNNNNNGC	1 cut(s)	370
NdeI	CATATG	1 cut(s)	163
NdeII	GATC	4 cut(s)	166, 218, 346, 400
NlaIII	CATG	4 cut(s)	127, 136, 147, 218
NruI	TCGCGA	1 cut(s)	422
NspI	RCATGY	1 cut(s)	147
PaeR7I	CTCGAG	1 cut(s)	284
PagI	TCATGA	1 cut(s)	132
PcsI	WCGNNNNNNNCGW	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	136
PflFI	GACNNNGTC	1 cut(s)	191
Ppu21I	YACGTR	1 cut(s)	179
Psp124BI	GAGCTC	1 cut(s)	203
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
PsyI	GACNNNGTC	1 cut(s)	191
RruI	TCGCGA	1 cut(s)	422
RsaI	GTAC	3 cut(s)	177, 290, 329
RsaNI	GTAC	3 cut(s)	176, 289, 328
SacI	GAGCTC	1 cut(s)	203
SaqAI	TTAA	1 cut(s)	445
Sau3AI	GATC	4 cut(s)	166, 218, 346, 400
ScaI	AGTACT	1 cut(s)	290
ScrFI	CCNGG	1 cut(s)	191
SduI	GDGCHC	1 cut(s)	203
SetI	ASST	7 cut(s)	14, 108, 181, 195, 203, 309, 398
SexAI	ACCWGGT	1 cut(s)	189
SfcI	CTRYAG	2 cut(s)	237, 387
Sfr274I	CTCGAG	1 cut(s)	284
SlaI	CTCGAG	1 cut(s)	284
SmlI	CTYRAG	2 cut(s)	284, 320
SmoI	CTYRAG	2 cut(s)	284, 320
Sse9I	AATT	2 cut(s)	82, 404
SspI	AATATT	1 cut(s)	380
SstI	GAGCTC	1 cut(s)	203
StyD4I	CCNGG	1 cut(s)	189
TaiI	ACGT	1 cut(s)	181
TaqI	TCGA	3 cut(s)	285, 345, 432
TasI	AATT	2 cut(s)	82, 404
TatI	WGTACW	1 cut(s)	288
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	1 cut(s)	445
Tru9I	TTAA	1 cut(s)	445
TspDTI	ATGAA	3 cut(s)	47, 121, 149
Tth111I	GACNNNGTC	1 cut(s)	191
XapI	RAATTY	1 cut(s)	82
XceI	RCATGY	1 cut(s)	147
XhoI	CTCGAG	1 cut(s)	284
ZrmI	AGTACT	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.