Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015470.1

Orthogroup ID

OG0001295

Physical Location & Seq

Genomic Coordinates Reverse (-)

22168 .. 22527

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015470.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atgaggttcatgaatcctgcatgtcttttcaacaagctaggaagaagccactccaagaagtcatacgaacggttggtacatgcagatgaccacgtcgagaggtcggccaagaagaagcacggttcagctccaaaaggttctatagatttgttcgtggggaaagaggagaagaaatacccagttcccctcaagtactttacacacccaaagctccaagaactcctcaaagagtaccaagaacccgtgtttgatccaagatttgatgagccgattgtgcttgaatgttctacggagacctttgagcagttgctccattatatcgtcaagactcagaagtcagaaatattcattagaatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

119

Amino Acids

14.04

Weight (kDa)

9.04

Isoelectric Point (pI)

51.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001295)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12051 FvH4_5g32781 FvH4_6g21652
prunus_persica	Prupe.1G235700_v2.0.a1 Prupe.2G131400_v2.0.a1 Prupe.2G131500_v2.0.a1 Prupe.2G131600_v2.0.a1 Prupe.8G072300_v2.0.a1 Prupe.8G072400_v2.0.a1
rosa_laevigata	RLG00000023594 RLG00000023595 RLG00000023596
rosa_multiflora	Rmu_sc0000382.1_g000036 Rmu_sc0000382.1_g000038 Rmu_sc0002978.1_g000014 Rmu_sc0002978.1_g000017 Rmu_sc0002978.1_g000018 Rmu_sc0002978.1_g000021 Rmu_sc0015470.1_g000003 Rmu_sc0015470.1_g000005 Rmu_sc0015470.1_g000006 Rmu_sc0015470.1_g000008
rosa_roxburghii	Rroxscaffold_1G00044700 Rroxscaffold_6G00402540 Rroxscaffold_6G00402550 Rroxscaffold_6G00402560
rosa_rugosa	Rorug03G0172000 Rorug03G0172100 Rorug03G0172200.1 Rorug03G0172500 Rorug05G0152100 Rorug05G0152300
rosa_samantha	Rh1BG192300 Rh1DG220700 Rh3AG223400 Rh3AG223500 Rh3AG223800 Rh3BG256100 Rh3BG256200 Rh3BG256300 Rh3BG256600 Rh3CG252100 Rh3CG252200 Rh3CG252300 Rh3CG252400 Rh3DG248300 Rh3DG248400 Rh3DG248500 Rh3DG248600 Rh5BG246800 Rh5CG277900 Rh5DG255400
rosa_wichuraiana	Rw3G020040 Rw3G020050 Rw3G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	334
AclWI	GGATC	1 cut(s)	245
AcoI	YGGCCR	1 cut(s)	105
AcsI	RAATTY	1 cut(s)	354
AfaI	GTAC	3 cut(s)	78, 194, 233
AgsI	TTSAA	2 cut(s)	31, 281
AjiI	CACGTC	1 cut(s)	94
AluBI	AGCT	3 cut(s)	37, 128, 211
AluI	AGCT	3 cut(s)	37, 128, 211
Alw26I	GTCTC	1 cut(s)	287
AlwI	GGATC	1 cut(s)	245
AoxI	GGCC	1 cut(s)	105
ApoI	RAATTY	1 cut(s)	354
BcoDI	GTCTC	1 cut(s)	287
BfaI	CTAG	1 cut(s)	38
BfmI	CTRYAG	1 cut(s)	141
BmcAI	AGTACT	1 cut(s)	194
BmgBI	CACGTC	1 cut(s)	94
BmrI	ACTGGG	1 cut(s)	173
BmuI	ACTGGG	1 cut(s)	173
BpuEI	CTTGAG	1 cut(s)	173
BsaI	GGTCTC	1 cut(s)	287
Bse1I	ACTGG	1 cut(s)	179
BseMII	CTCAG	1 cut(s)	344
BseNI	ACTGG	1 cut(s)	179
BseRI	GAGGAG	2 cut(s)	179, 212
BshFI	GGCC	1 cut(s)	107
BsmAI	GTCTC	1 cut(s)	287
BsnI	GGCC	1 cut(s)	107
Bso31I	GGTCTC	1 cut(s)	287
Bsp143I	GATC	1 cut(s)	250
BspANI	GGCC	1 cut(s)	107
BspCNI	CTCAG	1 cut(s)	343
BspHI	TCATGA	1 cut(s)	9
BspPI	GGATC	1 cut(s)	245
BspTNI	GGTCTC	1 cut(s)	287
BsrI	ACTGG	1 cut(s)	179
BssMI	GATC	1 cut(s)	250
Bst4CI	ACNGT	2 cut(s)	72, 122
BstDEI	CTNAG	1 cut(s)	330
BstKTI	GATC	1 cut(s)	253
BstMAI	GTCTC	1 cut(s)	287
BstMBI	GATC	1 cut(s)	250
BstMWI	GCNNNNNNNGC	1 cut(s)	274
BstNSI	RCATGY	2 cut(s)	24, 83
BstSFI	CTRYAG	1 cut(s)	141
BsuRI	GGCC	1 cut(s)	107
BtrI	CACGTC	1 cut(s)	94
CciI	TCATGA	1 cut(s)	9
Csp6I	GTAC	3 cut(s)	77, 193, 232
CviAII	CATG	3 cut(s)	10, 21, 80
CviJI	RGCY	6 cut(s)	37, 48, 107, 128, 211, 268
CviKI_1	RGCY	6 cut(s)	37, 48, 107, 128, 211, 268
CviQI	GTAC	3 cut(s)	77, 193, 232
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
DrdI	GACNNNNNNGTC	1 cut(s)	334
DseDI	GACNNNNNNGTC	1 cut(s)	334
EaeI	YGGCCR	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	287
FaeI	CATG	3 cut(s)	13, 24, 83
FaiI	YATR	6 cut(s)	11, 22, 64, 81, 143, 318
FatI	CATG	3 cut(s)	9, 20, 79
FspBI	CTAG	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	107
Hin1II	CATG	3 cut(s)	13, 24, 83
HinfI	GANTC	2 cut(s)	13, 328
Hpy188I	TCNGA	2 cut(s)	333, 340
Hpy188III	TCNNGA	3 cut(s)	10, 97, 325
Hpy99I	CGWCG	1 cut(s)	98
HpyCH4III	ACNGT	2 cut(s)	72, 122
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	2 cut(s)	20, 83
HpyF10VI	GCNNNNNNNGC	1 cut(s)	274
HpyF3I	CTNAG	1 cut(s)	330
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	3 cut(s)	13, 24, 83
Kzo9I	GATC	1 cut(s)	250
LmnI	GCTCC	3 cut(s)	133, 216, 315
LpnPI	CCDG	2 cut(s)	30, 192
MaeI	CTAG	1 cut(s)	38
MaeII	ACGT	1 cut(s)	93
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MboII	GAAGA	3 cut(s)	54, 124, 181
MluCI	AATT	1 cut(s)	354
MlyI	GAGTC	1 cut(s)	322
MnlI	CCTC	4 cut(s)	93, 157, 197, 233
MseI	TTAA	1 cut(s)	358
MslI	CAYNNNNRTG	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	274
NdeII	GATC	1 cut(s)	250
NlaIII	CATG	3 cut(s)	13, 24, 83
NspI	RCATGY	2 cut(s)	24, 83
PagI	TCATGA	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	13
PflFI	GACNNNGTC	1 cut(s)	92
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
PsrI	GAACNNNNNNTAC	2 cut(s)	60, 92
PsyI	GACNNNGTC	1 cut(s)	92
RsaI	GTAC	3 cut(s)	78, 194, 233
RsaNI	GTAC	3 cut(s)	77, 193, 232
RseI	CAYNNNNRTG	1 cut(s)	84
SaqAI	TTAA	1 cut(s)	358
Sau3AI	GATC	1 cut(s)	250
ScaI	AGTACT	1 cut(s)	194
SchI	GAGTC	1 cut(s)	322
SetI	ASST	8 cut(s)	8, 39, 96, 104, 130, 139, 213, 299
SfcI	CTRYAG	1 cut(s)	141
SmiMI	CAYNNNNRTG	1 cut(s)	84
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	1 cut(s)	354
SspI	AATATT	1 cut(s)	345
SspMI	CTAG	1 cut(s)	38
TaaI	ACNGT	2 cut(s)	72, 122
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	1 cut(s)	96
TasI	AATT	1 cut(s)	354
TatI	WGTACW	1 cut(s)	192
TfiI	GAWTC	1 cut(s)	13
Tru1I	TTAA	1 cut(s)	358
Tru9I	TTAA	1 cut(s)	358
TspDTI	ATGAA	2 cut(s)	26, 337
TspGWI	ACGGA	1 cut(s)	305
Tth111I	GACNNNGTC	1 cut(s)	92
XapI	RAATTY	1 cut(s)	354
XceI	RCATGY	2 cut(s)	24, 83
XspI	CTAG	1 cut(s)	38
ZrmI	AGTACT	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.