Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001295

Physical Location & Seq

Genomic Coordinates Forward (+)

23032137 .. 23033992

Gene Structure 1856 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG223800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGTTTCTCTCTTGAATTCCATACATCATCATTCCAAGCTAAGACTACCAGACTACATGATGTTCATGATATGTCTTATCAAGAAGACATATGATCGGTTGGTGCATGCAGATGACCAGGTCAAGAGCTCCAAGAAGAAGCATGGATCAACTCCTAAAGTTTCTATAGATTTGTTTGTGGGCAAAGAGGAGAAGAAATACTCTATTTCTCTCGAGTACTTTTTACACCCAAAGCTCCAAGAACTCCTCAAGGAGTACCGAGAACTCGTATTCGATCCAAGATGTGATGAGCCGATTGTGCTTGAATATTGTCCTACAGAGACCTTTGATCAATTACTCTATAATATCGCGATGGATATCGATAAGGAGCTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

125

Amino Acids

14.8

Weight (kDa)

6.29

Isoelectric Point (pI)

29.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	41 - 113	1.1e-06	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001295)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12051 FvH4_5g32781 FvH4_6g21652
prunus_persica	Prupe.1G235700_v2.0.a1 Prupe.2G131400_v2.0.a1 Prupe.2G131500_v2.0.a1 Prupe.2G131600_v2.0.a1 Prupe.8G072300_v2.0.a1 Prupe.8G072400_v2.0.a1
rosa_laevigata	RLG00000023594 RLG00000023595 RLG00000023596
rosa_multiflora	Rmu_sc0000382.1_g000036 Rmu_sc0000382.1_g000038 Rmu_sc0002978.1_g000014 Rmu_sc0002978.1_g000017 Rmu_sc0002978.1_g000018 Rmu_sc0002978.1_g000021 Rmu_sc0015470.1_g000003 Rmu_sc0015470.1_g000005 Rmu_sc0015470.1_g000006 Rmu_sc0015470.1_g000008
rosa_roxburghii	Rroxscaffold_1G00044700 Rroxscaffold_6G00402540 Rroxscaffold_6G00402550 Rroxscaffold_6G00402560
rosa_rugosa	Rorug03G0172000 Rorug03G0172100 Rorug03G0172200.1 Rorug03G0172500 Rorug05G0152100 Rorug05G0152300
rosa_samantha	Rh1BG192300 Rh1DG220700 Rh3AG223400 Rh3AG223500 Rh3AG223800 Rh3BG256100 Rh3BG256200 Rh3BG256300 Rh3BG256600 Rh3CG252100 Rh3CG252200 Rh3CG252300 Rh3CG252400 Rh3DG248300 Rh3DG248400 Rh3DG248500 Rh3DG248600 Rh5BG246800 Rh5CG277900 Rh5DG255400
rosa_wichuraiana	Rw3G020040 Rw3G020050 Rw3G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	350
AclWI	GGATC	2 cut(s)	154, 269
AcsI	RAATTY	1 cut(s)	16
AfaI	GTAC	2 cut(s)	218, 257
AgsI	TTSAA	2 cut(s)	16, 305
AjnI	CCWGG	1 cut(s)	117
AluBI	AGCT	4 cut(s)	40, 129, 235, 370
AluI	AGCT	4 cut(s)	40, 129, 235, 370
Alw21I	GWGCWC	1 cut(s)	131
Alw26I	GTCTC	1 cut(s)	314
AlwI	GGATC	2 cut(s)	154, 269
Ama87I	CYCGRG	1 cut(s)	212
ApoI	RAATTY	1 cut(s)	16
AvaI	CYCGRG	1 cut(s)	212
BanII	GRGCYC	1 cut(s)	131
BbsI	GAAGAC	1 cut(s)	92
Bbv12I	GWGCWC	1 cut(s)	131
BccI	CCATC	1 cut(s)	346
BciT130I	CCWGG	1 cut(s)	119
BclI	TGATCA	1 cut(s)	328
BcoDI	GTCTC	1 cut(s)	314
BfmI	CTRYAG	2 cut(s)	165, 315
BmcAI	AGTACT	1 cut(s)	218
Bme1390I	CCNGG	1 cut(s)	119
BmeT110I	CYCGRG	1 cut(s)	212
BmrFI	CCNGG	1 cut(s)	119
BpiI	GAAGAC	1 cut(s)	92
BpuEI	CTTGAG	1 cut(s)	233
Bsa29I	ATCGAT	1 cut(s)	360
BsaBI	GATNNNNATC	1 cut(s)	356
BsaI	GGTCTC	1 cut(s)	314
Bse8I	GATNNNNATC	1 cut(s)	356
BseBI	CCWGG	1 cut(s)	119
BseCI	ATCGAT	1 cut(s)	360
BseJI	GATNNNNATC	1 cut(s)	356
BseRI	GAGGAG	2 cut(s)	203, 236
Bsh1236I	CGCG	1 cut(s)	350
BshVI	ATCGAT	1 cut(s)	360
BsiHKAI	GWGCWC	1 cut(s)	131
BsiHKCI	CYCGRG	1 cut(s)	212
BsmAI	GTCTC	1 cut(s)	314
Bso31I	GGTCTC	1 cut(s)	314
BsoBI	CYCGRG	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	131
Bsp143I	GATC	4 cut(s)	94, 146, 274, 328
Bsp68I	TCGCGA	1 cut(s)	350
BspDI	ATCGAT	1 cut(s)	360
BspFNI	CGCG	1 cut(s)	350
BspHI	TCATGA	1 cut(s)	66
BspPI	GGATC	2 cut(s)	154, 269
BspTNI	GGTCTC	1 cut(s)	314
BssMI	GATC	4 cut(s)	94, 146, 274, 328
Bst2UI	CCWGG	1 cut(s)	119
BstC8I	GCNNGC	1 cut(s)	108
BstDEI	CTNAG	1 cut(s)	41
BstFNI	CGCG	1 cut(s)	350
BstKTI	GATC	4 cut(s)	97, 149, 277, 331
BstMAI	GTCTC	1 cut(s)	314
BstMBI	GATC	4 cut(s)	94, 146, 274, 328
BstMWI	GCNNNNNNNGC	1 cut(s)	298
BstNI	CCWGG	1 cut(s)	119
BstNSI	RCATGY	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	117
BstSFI	CTRYAG	2 cut(s)	165, 315
BstUI	CGCG	1 cut(s)	350
BstV2I	GAAGAC	1 cut(s)	92
Bsu15I	ATCGAT	1 cut(s)	360
BsuTUI	ATCGAT	1 cut(s)	360
BtgZI	GCGATG	1 cut(s)	365
BtuMI	TCGCGA	1 cut(s)	350
Cac8I	GCNNGC	1 cut(s)	108
CciI	TCATGA	1 cut(s)	66
ClaI	ATCGAT	1 cut(s)	360
CsiI	ACCWGGT	1 cut(s)	117
Csp6I	GTAC	2 cut(s)	217, 256
CviAII	CATG	4 cut(s)	58, 67, 107, 143
CviJI	RGCY	5 cut(s)	40, 129, 235, 292, 370
CviKI_1	RGCY	5 cut(s)	40, 129, 235, 292, 370
CviQI	GTAC	2 cut(s)	217, 256
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	4 cut(s)	96, 148, 276, 330
DpnII	GATC	4 cut(s)	94, 146, 274, 328
Ecl136II	GAGCTC	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	131
Eco31I	GGTCTC	1 cut(s)	314
Eco32I	GATATC	1 cut(s)	358
Eco53kI	GAGCTC	1 cut(s)	129
Eco88I	CYCGRG	1 cut(s)	212
EcoICRI	GAGCTC	1 cut(s)	129
EcoRI	GAATTC	1 cut(s)	16
EcoRII	CCWGG	1 cut(s)	117
EcoRV	GATATC	1 cut(s)	358
EcoT38I	GRGCYC	1 cut(s)	131
FaeI	CATG	4 cut(s)	61, 70, 110, 146
FatI	CATG	4 cut(s)	57, 66, 106, 142
FauNDI	CATATG	1 cut(s)	91
FbaI	TGATCA	1 cut(s)	328
FriOI	GRGCYC	1 cut(s)	131
Hin1II	CATG	4 cut(s)	61, 70, 110, 146
Hpy188III	TCNNGA	6 cut(s)	13, 67, 82, 124, 212, 349
HpyCH4V	TGCA	2 cut(s)	106, 110
HpyF10VI	GCNNNNNNNGC	1 cut(s)	298
HpyF3I	CTNAG	1 cut(s)	41
Hsp92II	CATG	4 cut(s)	61, 70, 110, 146
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	4 cut(s)	94, 146, 274, 328
LmnI	GCTCC	3 cut(s)	134, 240, 367
LpnPI	CCDG	3 cut(s)	63, 104, 131
MabI	ACCWGGT	1 cut(s)	117
MalI	GATC	4 cut(s)	96, 148, 276, 330
MboI	GATC	4 cut(s)	94, 146, 274, 328
MboII	GAAGA	3 cut(s)	97, 148, 205
MhlI	GDGCHC	1 cut(s)	131
MluCI	AATT	2 cut(s)	16, 332
MnlI	CCTC	2 cut(s)	181, 257
MseI	TTAA	1 cut(s)	376
MslI	CAYNNNNRTG	1 cut(s)	111
MspR9I	CCNGG	1 cut(s)	119
MvaI	CCWGG	1 cut(s)	119
MvnI	CGCG	1 cut(s)	350
MwoI	GCNNNNNNNGC	1 cut(s)	298
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	4 cut(s)	94, 146, 274, 328
NlaIII	CATG	4 cut(s)	61, 70, 110, 146
NruI	TCGCGA	1 cut(s)	350
NspI	RCATGY	1 cut(s)	110
PaeI	GCATGC	1 cut(s)	110
PaeR7I	CTCGAG	1 cut(s)	212
PagI	TCATGA	1 cut(s)	66
PflFI	GACNNNGTC	1 cut(s)	119
Psp124BI	GAGCTC	1 cut(s)	131
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
PsyI	GACNNNGTC	1 cut(s)	119
RruI	TCGCGA	1 cut(s)	350
RsaI	GTAC	2 cut(s)	218, 257
RsaNI	GTAC	2 cut(s)	217, 256
RseI	CAYNNNNRTG	1 cut(s)	111
SacI	GAGCTC	1 cut(s)	131
SaqAI	TTAA	1 cut(s)	376
Sau3AI	GATC	4 cut(s)	94, 146, 274, 328
ScaI	AGTACT	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	119
SduI	GDGCHC	1 cut(s)	131
SetI	ASST	6 cut(s)	42, 123, 131, 237, 326, 372
SexAI	ACCWGGT	1 cut(s)	117
SfcI	CTRYAG	2 cut(s)	165, 315
Sfr274I	CTCGAG	1 cut(s)	212
SlaI	CTCGAG	1 cut(s)	212
SmiMI	CAYNNNNRTG	1 cut(s)	111
SmlI	CTYRAG	2 cut(s)	212, 248
SmoI	CTYRAG	2 cut(s)	212, 248
SphI	GCATGC	1 cut(s)	110
Sse9I	AATT	2 cut(s)	16, 332
SspI	AATATT	1 cut(s)	308
SstI	GAGCTC	1 cut(s)	131
StyD4I	CCNGG	1 cut(s)	117
TaqI	TCGA	3 cut(s)	213, 273, 360
TasI	AATT	2 cut(s)	16, 332
TatI	WGTACW	1 cut(s)	216
Tru1I	TTAA	1 cut(s)	376
Tru9I	TTAA	1 cut(s)	376
TspDTI	ATGAA	1 cut(s)	55
Tth111I	GACNNNGTC	1 cut(s)	119
XapI	RAATTY	1 cut(s)	16
XceI	RCATGY	1 cut(s)	110
XhoI	CTCGAG	1 cut(s)	212
ZrmI	AGTACT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.