Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002978.1

Orthogroup ID

OG0001295

Physical Location & Seq

Genomic Coordinates Reverse (-)

76449 .. 76805

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002978.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atgaggttcatgaatcctgcatgtcttttcaacaagctaggaagaagccacaccaagaagtcatacgaacggttggtacgtgcagatgaccaggtcgagaggtccaagaagaagcacggttcagcttcaaaaggttctatagatttgttcgtggggaaagaggagaagaaatacccagttcccctcaagtactttacacactcaaagctccaagaactcctcaaagagtaccaagaacccctgtttgatccaagatttgatgagccgattgtgcttgaatgttctacggagacctttgagcggttactccattatatcgtcaagactcagaagtcagaagtattcattagaatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

118

Amino Acids

14.0

Weight (kDa)

9.34

Isoelectric Point (pI)

44.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001295)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12051 FvH4_5g32781 FvH4_6g21652
prunus_persica	Prupe.1G235700_v2.0.a1 Prupe.2G131400_v2.0.a1 Prupe.2G131500_v2.0.a1 Prupe.2G131600_v2.0.a1 Prupe.8G072300_v2.0.a1 Prupe.8G072400_v2.0.a1
rosa_laevigata	RLG00000023594 RLG00000023595 RLG00000023596
rosa_multiflora	Rmu_sc0000382.1_g000036 Rmu_sc0000382.1_g000038 Rmu_sc0002978.1_g000014 Rmu_sc0002978.1_g000017 Rmu_sc0002978.1_g000018 Rmu_sc0002978.1_g000021 Rmu_sc0015470.1_g000003 Rmu_sc0015470.1_g000005 Rmu_sc0015470.1_g000006 Rmu_sc0015470.1_g000008
rosa_roxburghii	Rroxscaffold_1G00044700 Rroxscaffold_6G00402540 Rroxscaffold_6G00402550 Rroxscaffold_6G00402560
rosa_rugosa	Rorug03G0172000 Rorug03G0172100 Rorug03G0172200.1 Rorug03G0172500 Rorug05G0152100 Rorug05G0152300
rosa_samantha	Rh1BG192300 Rh1DG220700 Rh3AG223400 Rh3AG223500 Rh3AG223800 Rh3BG256100 Rh3BG256200 Rh3BG256300 Rh3BG256600 Rh3CG252100 Rh3CG252200 Rh3CG252300 Rh3CG252400 Rh3DG248300 Rh3DG248400 Rh3DG248500 Rh3DG248600 Rh5BG246800 Rh5CG277900 Rh5DG255400
rosa_wichuraiana	Rw3G020040 Rw3G020050 Rw3G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	331
AccBSI	CCGCTC	1 cut(s)	301
AciI	CCGC	1 cut(s)	301
AclWI	GGATC	1 cut(s)	242
AcsI	RAATTY	1 cut(s)	351
AfaI	GTAC	3 cut(s)	78, 191, 230
AfiI	CCNNNNNNNGG	1 cut(s)	300
AgsI	TTSAA	3 cut(s)	31, 129, 278
AjnI	CCWGG	1 cut(s)	90
AluBI	AGCT	3 cut(s)	37, 125, 208
AluI	AGCT	3 cut(s)	37, 125, 208
Alw26I	GTCTC	1 cut(s)	284
AlwI	GGATC	1 cut(s)	242
ApoI	RAATTY	1 cut(s)	351
AspS9I	GGNCC	1 cut(s)	102
AvaII	GGWCC	1 cut(s)	102
BciT130I	CCWGG	1 cut(s)	92
BcoDI	GTCTC	1 cut(s)	284
BfaI	CTAG	1 cut(s)	38
BfmI	CTRYAG	1 cut(s)	138
BmcAI	AGTACT	1 cut(s)	191
Bme1390I	CCNGG	1 cut(s)	92
Bme18I	GGWCC	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	102
BmrFI	CCNGG	1 cut(s)	92
BmrI	ACTGGG	1 cut(s)	170
BmuI	ACTGGG	1 cut(s)	170
BpuEI	CTTGAG	1 cut(s)	170
BsaAI	YACGTR	1 cut(s)	80
BsaI	GGTCTC	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	1 cut(s)	300
Bse1I	ACTGG	1 cut(s)	176
BseBI	CCWGG	1 cut(s)	92
BseLI	CCNNNNNNNGG	1 cut(s)	300
BseMII	CTCAG	1 cut(s)	341
BseNI	ACTGG	1 cut(s)	176
BseRI	GAGGAG	2 cut(s)	176, 209
BsgI	GTGCAG	1 cut(s)	102
BslI	CCNNNNNNNGG	1 cut(s)	300
BsmAI	GTCTC	1 cut(s)	284
Bso31I	GGTCTC	1 cut(s)	284
Bsp143I	GATC	1 cut(s)	247
BspACI	CCGC	1 cut(s)	301
BspCNI	CTCAG	1 cut(s)	340
BspHI	TCATGA	1 cut(s)	9
BspPI	GGATC	1 cut(s)	242
BspTNI	GGTCTC	1 cut(s)	284
BsrBI	CCGCTC	1 cut(s)	301
BsrI	ACTGG	1 cut(s)	176
BssMI	GATC	1 cut(s)	247
Bst2UI	CCWGG	1 cut(s)	92
Bst4CI	ACNGT	2 cut(s)	72, 119
BstBAI	YACGTR	1 cut(s)	80
BstDEI	CTNAG	1 cut(s)	327
BstKTI	GATC	1 cut(s)	250
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	1 cut(s)	271
BstNI	CCWGG	1 cut(s)	92
BstNSI	RCATGY	1 cut(s)	24
BstSCI	CCNGG	1 cut(s)	90
BstSFI	CTRYAG	1 cut(s)	138
CciI	TCATGA	1 cut(s)	9
Cfr13I	GGNCC	1 cut(s)	102
CsiI	ACCWGGT	1 cut(s)	90
Csp6I	GTAC	3 cut(s)	77, 190, 229
CviAII	CATG	2 cut(s)	10, 21
CviJI	RGCY	5 cut(s)	37, 48, 125, 208, 265
CviKI_1	RGCY	5 cut(s)	37, 48, 125, 208, 265
CviQI	GTAC	3 cut(s)	77, 190, 229
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
DrdI	GACNNNNNNGTC	1 cut(s)	331
DseDI	GACNNNNNNGTC	1 cut(s)	331
Eco31I	GGTCTC	1 cut(s)	284
Eco47I	GGWCC	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	90
FaeI	CATG	2 cut(s)	13, 24
FaiI	YATR	5 cut(s)	11, 22, 64, 140, 315
FatI	CATG	2 cut(s)	9, 20
FspBI	CTAG	1 cut(s)	38
Hin1II	CATG	2 cut(s)	13, 24
HinfI	GANTC	2 cut(s)	13, 325
Hpy188I	TCNGA	2 cut(s)	330, 337
Hpy188III	TCNNGA	3 cut(s)	10, 97, 322
HpyCH4III	ACNGT	2 cut(s)	72, 119
HpyCH4IV	ACGT	1 cut(s)	79
HpyCH4V	TGCA	2 cut(s)	20, 83
HpyF10VI	GCNNNNNNNGC	1 cut(s)	271
HpyF3I	CTNAG	1 cut(s)	327
HpySE526I	ACGT	1 cut(s)	79
Hsp92II	CATG	2 cut(s)	13, 24
Kzo9I	GATC	1 cut(s)	247
LmnI	GCTCC	1 cut(s)	213
LpnPI	CCDG	5 cut(s)	30, 77, 104, 189, 254
MabI	ACCWGGT	1 cut(s)	90
MaeI	CTAG	1 cut(s)	38
MaeII	ACGT	1 cut(s)	79
MaeIII	GTNAC	1 cut(s)	303
MalI	GATC	1 cut(s)	249
MbiI	CCGCTC	1 cut(s)	301
MboI	GATC	1 cut(s)	247
MboII	GAAGA	3 cut(s)	54, 121, 178
MluCI	AATT	1 cut(s)	351
MlyI	GAGTC	1 cut(s)	319
MnlI	CCTC	4 cut(s)	93, 154, 194, 230
MseI	TTAA	1 cut(s)	355
MspR9I	CCNGG	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	92
MwoI	GCNNNNNNNGC	1 cut(s)	271
NdeII	GATC	1 cut(s)	247
NlaIII	CATG	2 cut(s)	13, 24
NspI	RCATGY	1 cut(s)	24
PagI	TCATGA	1 cut(s)	9
PcsI	WCGNNNNNNNCGW	1 cut(s)	76
PfeI	GAWTC	1 cut(s)	13
PflFI	GACNNNGTC	1 cut(s)	92
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
Ppu21I	YACGTR	1 cut(s)	80
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PspPI	GGNCC	1 cut(s)	102
PsrI	GAACNNNNNNTAC	2 cut(s)	60, 92
PsyI	GACNNNGTC	1 cut(s)	92
RsaI	GTAC	3 cut(s)	78, 191, 230
RsaNI	GTAC	3 cut(s)	77, 190, 229
SaqAI	TTAA	1 cut(s)	355
Sau3AI	GATC	1 cut(s)	247
Sau96I	GGNCC	1 cut(s)	102
ScaI	AGTACT	1 cut(s)	191
SchI	GAGTC	1 cut(s)	319
ScrFI	CCNGG	1 cut(s)	92
SetI	ASST	9 cut(s)	8, 39, 82, 96, 104, 127, 136, 210, 296
SexAI	ACCWGGT	1 cut(s)	90
SfcI	CTRYAG	1 cut(s)	138
SinI	GGWCC	1 cut(s)	102
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	1 cut(s)	351
SsiI	CCGC	1 cut(s)	301
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	90
TaaI	ACNGT	2 cut(s)	72, 119
TaiI	ACGT	1 cut(s)	82
TaqI	TCGA	1 cut(s)	96
TasI	AATT	1 cut(s)	351
TatI	WGTACW	1 cut(s)	189
TfiI	GAWTC	1 cut(s)	13
Tru1I	TTAA	1 cut(s)	355
Tru9I	TTAA	1 cut(s)	355
TspDTI	ATGAA	2 cut(s)	26, 334
TspGWI	ACGGA	1 cut(s)	302
Tth111I	GACNNNGTC	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	102
XapI	RAATTY	1 cut(s)	351
XceI	RCATGY	1 cut(s)	24
XspI	CTAG	1 cut(s)	38
ZrmI	AGTACT	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.