Prupe.1G235700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001295
Physical Location & Seq
Forward (+)
24943033 .. 24943478
446 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G235700.1

Sequence Viewer

Length: 318 bp
ATGGAGATCAAGTTCAAGTTCCAGAAGGTTATATGGCTCTGTACGTTGGGGAAGAGCGAAGAAGAAAATATTAAGTTTTCTTTGAAGTGTCTCTCTTGTCCAGCTTTCCAAGAAGAGACCATCAAGTCGCAGCCGGATGCGTTTGATGCCAAGATTGAAGGGCCATTTCTGCTTTTATCATATTCAACCACCCCACTAGTTACCAAAACAATCGCAAGCTTGGAAAGAGCCGCAGTTTCTGCCCTGCTAATGATCCTGATCAGGCCTGGTATATTTCTATCATCATGCATACTCAAACGTATTATATATGCTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.79

Weight (kDa)

8.73

Isoelectric Point (pI)

58.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 124
AciI CCGC 1 cut(s) 231
AclWI GGATC 1 cut(s) 247
AfaI GTAC 1 cut(s) 43
AgsI TTSAA 4 cut(s) 16, 85, 158, 186
AhlI ACTAGT 1 cut(s) 196
AjnI CCWGG 1 cut(s) 265
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 2 cut(s) 104, 219
AluI AGCT 2 cut(s) 104, 219
Alw26I GTCTC 2 cut(s) 95, 110
AlwI GGATC 1 cut(s) 247
AlwNI CAGNNNCTG 1 cut(s) 239
AoxI GGCC 2 cut(s) 161, 263
ApeKI GCWGC 1 cut(s) 130
AspS9I GGNCC 1 cut(s) 161
BbvI GCAGC 1 cut(s) 142
BccI CCATC 1 cut(s) 128
BciT130I CCWGG 1 cut(s) 267
BclI TGATCA 1 cut(s) 258
BcoDI GTCTC 2 cut(s) 95, 110
BcuI ACTAGT 1 cut(s) 196
BfaI CTAG 1 cut(s) 197
BisI GCNGC 2 cut(s) 131, 231
BlsI GCNGC 2 cut(s) 132, 232
Bme1390I CCNGG 1 cut(s) 267
BmgT120I GGNCC 1 cut(s) 161
BmrFI CCNGG 1 cut(s) 267
BmsI GCATC 2 cut(s) 127, 136
BsaBI GATNNNNATC 1 cut(s) 257
BsaI GGTCTC 1 cut(s) 110
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bse8I GATNNNNATC 1 cut(s) 257
BseBI CCWGG 1 cut(s) 267
BseGI GGATG 1 cut(s) 142
BseJI GATNNNNATC 1 cut(s) 257
BseXI GCAGC 1 cut(s) 142
BshFI GGCC 2 cut(s) 163, 265
BsiSI CCGG 1 cut(s) 134
BsmAI GTCTC 2 cut(s) 95, 110
BsnI GGCC 2 cut(s) 163, 265
Bso31I GGTCTC 1 cut(s) 110
Bsp143I GATC 3 cut(s) 6, 252, 258
BspACI CCGC 1 cut(s) 231
BspANI GGCC 2 cut(s) 163, 265
BspPI GGATC 1 cut(s) 247
BspQI GCTCTTC 1 cut(s) 47
BspTNI GGTCTC 1 cut(s) 110
BssMI GATC 3 cut(s) 6, 252, 258
Bst2UI CCWGG 1 cut(s) 267
Bst6I CTCTTC 2 cut(s) 47, 108
BstAPI GCANNNNNTGC 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 217
BstF5I GGATG 1 cut(s) 142
BstKTI GATC 3 cut(s) 9, 255, 261
BstMAI GTCTC 2 cut(s) 95, 110
BstMBI GATC 3 cut(s) 6, 252, 258
BstMWI GCNNNNNNNGC 3 cut(s) 146, 169, 239
BstNI CCWGG 1 cut(s) 267
BstSCI CCNGG 1 cut(s) 265
BstV1I GCAGC 1 cut(s) 142
BsuRI GGCC 2 cut(s) 163, 265
BtsCI GGATG 1 cut(s) 142
Cac8I GCNNGC 1 cut(s) 217
CaiI CAGNNNCTG 1 cut(s) 239
Cfr13I GGNCC 1 cut(s) 161
Csp6I GTAC 1 cut(s) 42
CviAII CATG 1 cut(s) 285
CviJI RGCY 7 cut(s) 37, 104, 133, 163, 219, 230, 265
CviKI_1 RGCY 7 cut(s) 37, 104, 133, 163, 219, 230, 265
CviQI GTAC 1 cut(s) 42
DpnI GATC 3 cut(s) 8, 254, 260
DpnII GATC 3 cut(s) 6, 252, 258
DrdI GACNNNNNNGTC 1 cut(s) 124
DseDI GACNNNNNNGTC 1 cut(s) 124
Eam1104I CTCTTC 2 cut(s) 47, 108
EarI CTCTTC 2 cut(s) 47, 108
Eco147I AGGCCT 1 cut(s) 265
Eco31I GGTCTC 1 cut(s) 110
EcoRII CCWGG 1 cut(s) 265
EcoT22I ATGCAT 1 cut(s) 290
FaeI CATG 1 cut(s) 288
FatI CATG 1 cut(s) 284
FbaI TGATCA 1 cut(s) 258
Fnu4HI GCNGC 2 cut(s) 131, 231
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 2 cut(s) 131, 231
FspBI CTAG 1 cut(s) 197
GluI GCNGC 2 cut(s) 131, 231
HaeIII GGCC 2 cut(s) 163, 265
HapII CCGG 1 cut(s) 134
Hin1II CATG 1 cut(s) 288
HindIII AAGCTT 1 cut(s) 217
HpaII CCGG 1 cut(s) 134
Hpy188III TCNNGA 2 cut(s) 22, 256
HpyAV CCTTC 2 cut(s) 19, 152
HpyCH4IV ACGT 2 cut(s) 44, 298
HpyCH4V TGCA 1 cut(s) 288
HpyF10VI GCNNNNNNNGC 3 cut(s) 146, 169, 239
HpySE526I ACGT 2 cut(s) 44, 298
Hsp92II CATG 1 cut(s) 288
Ksp22I TGATCA 1 cut(s) 258
Kzo9I GATC 3 cut(s) 6, 252, 258
LguI GCTCTTC 1 cut(s) 47
LpnPI CCDG 8 cut(s) 35, 114, 147, 247, 252, 257, 269, 279
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 2 cut(s) 127, 136
MaeI CTAG 1 cut(s) 197
MaeII ACGT 2 cut(s) 44, 298
MaeIII GTNAC 1 cut(s) 199
MalI GATC 3 cut(s) 8, 254, 260
MboI GATC 3 cut(s) 6, 252, 258
MboII GAAGA 4 cut(s) 64, 71, 74, 125
Mph1103I ATGCAT 1 cut(s) 290
MseI TTAA 1 cut(s) 72
MspI CCGG 1 cut(s) 134
MspR9I CCNGG 1 cut(s) 267
MvaI CCWGG 1 cut(s) 267
MwoI GCNNNNNNNGC 3 cut(s) 146, 169, 239
NdeII GATC 3 cut(s) 6, 252, 258
NlaIII CATG 1 cut(s) 288
NsiI ATGCAT 1 cut(s) 290
PceI AGGCCT 1 cut(s) 265
PciSI GCTCTTC 1 cut(s) 47
PkrI GCNGC 2 cut(s) 132, 232
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
PspPI GGNCC 1 cut(s) 161
PstNI CAGNNNCTG 1 cut(s) 239
RsaI GTAC 1 cut(s) 43
RsaNI GTAC 1 cut(s) 42
SapI GCTCTTC 1 cut(s) 47
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 2 cut(s) 131, 231
Sau3AI GATC 3 cut(s) 6, 252, 258
Sau96I GGNCC 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 267
SetI ASST 5 cut(s) 30, 47, 106, 221, 301
SfaNI GCATC 2 cut(s) 127, 136
SpeI ACTAGT 1 cut(s) 196
SseBI AGGCCT 1 cut(s) 265
SsiI CCGC 1 cut(s) 231
SspI AATATT 1 cut(s) 70
SspMI CTAG 1 cut(s) 197
StuI AGGCCT 1 cut(s) 265
StyD4I CCNGG 1 cut(s) 265
TaiI ACGT 2 cut(s) 47, 301
TauI GCSGC 1 cut(s) 233
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TseI GCWGC 1 cut(s) 130
XspI CTAG 1 cut(s) 197
Zsp2I ATGCAT 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.