Prupe.2G131600_v2.0.a1

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0001295
Physical Location & Seq
Forward (+)
18972827 .. 18973204
378 bp
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UTR
Exon/CDS
Intron
Prupe.2G131600.1

Sequence Viewer

Length: 378 bp
ATGAGCCCTGCTGCAAGTCTTGTCCAGCAGAAAATCAGGCTGTTCGTCCAAAAATTAGGCAAAGGTTTCCATTCCAAGAAAGCATACAAAAAGTTGGAGCATGCCTCTGAGAGCTCCAAGAATAAGCGTAAGGATGGAGATCAAGTTCAAGTTCCAGAAGGTTATGTGGCTGTGTACGTGGGGGAAGAGCGAAGAAAGTATAAAGTTTCTTTGAAGTGTCTCTCTTGTCCAGCTTTCCAAGAACTGATCATCGAGTCGATGTCAGATGTGTTGGATGTCAAGATTGAAGGGCCTATTATGCTTTCATCATACCCAACCGAGCGCTTTGATGTGTTTATTAGATTGCATGCATGGGATATTGCATGCATGGAAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

126

Amino Acids

14.25

Weight (kDa)

8.96

Isoelectric Point (pI)

61.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 176
AfeI AGCGCT 1 cut(s) 323
AgsI TTSAA 3 cut(s) 149, 214, 287
AloI GAACNNNNNNTCC 2 cut(s) 129, 161
AluBI AGCT 2 cut(s) 114, 233
AluI AGCT 2 cut(s) 114, 233
Alw21I GWGCWC 1 cut(s) 116
Alw26I GTCTC 1 cut(s) 224
Aor51HI AGCGCT 1 cut(s) 323
AoxI GGCC 1 cut(s) 290
ApeKI GCWGC 1 cut(s) 11
AspLEI GCGC 1 cut(s) 324
AspS9I GGNCC 1 cut(s) 290
BanII GRGCYC 2 cut(s) 8, 116
Bbv12I GWGCWC 1 cut(s) 116
BccI CCATC 1 cut(s) 128
BclI TGATCA 1 cut(s) 246
BcoDI GTCTC 1 cut(s) 224
BfoI RGCGCY 1 cut(s) 325
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
BmgT120I GGNCC 1 cut(s) 290
BplI GAGNNNNNCTC 2 cut(s) 89, 121
BsaAI YACGTR 1 cut(s) 178
BsaBI GATNNNNATC 1 cut(s) 138
BsaXI ACNNNNNCTCC 2 cut(s) 129, 159
Bse8I GATNNNNATC 1 cut(s) 138
BseGI GGATG 2 cut(s) 139, 280
BseJI GATNNNNATC 1 cut(s) 138
BseMII CTCAG 1 cut(s) 99
BshFI GGCC 1 cut(s) 292
BsiHKAI GWGCWC 1 cut(s) 116
BsmAI GTCTC 1 cut(s) 224
BsnI GGCC 1 cut(s) 292
Bsp1286I GDGCHC 2 cut(s) 8, 116
Bsp143I GATC 2 cut(s) 139, 246
BspANI GGCC 1 cut(s) 292
BspCNI CTCAG 1 cut(s) 100
BspQI GCTCTTC 1 cut(s) 180
BssMI GATC 2 cut(s) 139, 246
Bst6I CTCTTC 1 cut(s) 180
BstBAI YACGTR 1 cut(s) 178
BstC8I GCNNGC 3 cut(s) 102, 348, 364
BstDEI CTNAG 1 cut(s) 108
BstF5I GGATG 2 cut(s) 139, 280
BstH2I RGCGCY 1 cut(s) 325
BstHHI GCGC 1 cut(s) 324
BstKTI GATC 2 cut(s) 142, 249
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 2 cut(s) 139, 246
BstMWI GCNNNNNNNGC 1 cut(s) 298
BstNSI RCATGY 3 cut(s) 104, 350, 366
BsuRI GGCC 1 cut(s) 292
BtsCI GGATG 2 cut(s) 139, 280
Cac8I GCNNGC 3 cut(s) 102, 348, 364
CfoI GCGC 1 cut(s) 324
Cfr13I GGNCC 1 cut(s) 290
Csp6I GTAC 1 cut(s) 175
CviAII CATG 5 cut(s) 101, 347, 351, 363, 367
CviJI RGCY 6 cut(s) 6, 40, 114, 170, 233, 292
CviKI_1 RGCY 6 cut(s) 6, 40, 114, 170, 233, 292
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 1 cut(s) 108
DpnI GATC 2 cut(s) 141, 248
DpnII GATC 2 cut(s) 139, 246
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Ecl136II GAGCTC 1 cut(s) 114
Eco24I GRGCYC 2 cut(s) 8, 116
Eco47III AGCGCT 1 cut(s) 323
Eco53kI GAGCTC 1 cut(s) 114
EcoICRI GAGCTC 1 cut(s) 114
EcoO109I RGGNCCY 1 cut(s) 290
EcoT22I ATGCAT 2 cut(s) 352, 368
EcoT38I GRGCYC 2 cut(s) 8, 116
FaeI CATG 5 cut(s) 104, 350, 354, 366, 370
FatI CATG 5 cut(s) 100, 346, 350, 362, 366
FbaI TGATCA 1 cut(s) 246
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 2 cut(s) 146, 287
FriOI GRGCYC 2 cut(s) 8, 116
Fsp4HI GCNGC 1 cut(s) 12
GlaI GCGC 1 cut(s) 323
GluI GCNGC 1 cut(s) 12
HaeII RGCGCY 1 cut(s) 325
HaeIII GGCC 1 cut(s) 292
HhaI GCGC 1 cut(s) 324
Hin1II CATG 5 cut(s) 104, 350, 354, 366, 370
Hin6I GCGC 1 cut(s) 322
HinP1I GCGC 1 cut(s) 322
HinfI GANTC 1 cut(s) 254
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 2 cut(s) 109, 265
Hpy188III TCNNGA 2 cut(s) 155, 280
Hpy8I GTNNAC 1 cut(s) 175
HpyAV CCTTC 2 cut(s) 152, 281
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 5 cut(s) 14, 346, 350, 362, 366
HpyF10VI GCNNNNNNNGC 1 cut(s) 298
HpyF3I CTNAG 1 cut(s) 108
HpySE526I ACGT 1 cut(s) 177
Hsp92II CATG 5 cut(s) 104, 350, 354, 366, 370
HspAI GCGC 1 cut(s) 322
Ksp22I TGATCA 1 cut(s) 246
Kzo9I GATC 2 cut(s) 139, 246
LguI GCTCTTC 1 cut(s) 180
LmnI GCTCC 2 cut(s) 97, 119
LpnPI CCDG 5 cut(s) 21, 22, 38, 168, 243
MaeII ACGT 1 cut(s) 177
MalI GATC 2 cut(s) 141, 248
MboI GATC 2 cut(s) 139, 246
MboII GAAGA 2 cut(s) 197, 204
MhlI GDGCHC 2 cut(s) 8, 116
MluCI AATT 1 cut(s) 53
MlyI GAGTC 1 cut(s) 263
MmeI TCCRAC 2 cut(s) 75, 252
MnlI CCTC 1 cut(s) 115
Mph1103I ATGCAT 2 cut(s) 352, 368
MwoI GCNNNNNNNGC 1 cut(s) 298
NdeII GATC 2 cut(s) 139, 246
NlaIII CATG 5 cut(s) 104, 350, 354, 366, 370
NsiI ATGCAT 2 cut(s) 352, 368
NspI RCATGY 3 cut(s) 104, 350, 366
PaeI GCATGC 3 cut(s) 104, 350, 366
PciSI GCTCTTC 1 cut(s) 180
PkrI GCNGC 1 cut(s) 13
PleI GAGTC 1 cut(s) 262
PpsI GAGTC 1 cut(s) 262
Ppu21I YACGTR 1 cut(s) 178
Psp124BI GAGCTC 1 cut(s) 116
PspPI GGNCC 1 cut(s) 290
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SacI GAGCTC 1 cut(s) 116
SapI GCTCTTC 1 cut(s) 180
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 2 cut(s) 139, 246
Sau96I GGNCC 1 cut(s) 290
SchI GAGTC 1 cut(s) 263
SduI GDGCHC 2 cut(s) 8, 116
SetI ASST 5 cut(s) 67, 116, 163, 180, 235
SphI GCATGC 3 cut(s) 104, 350, 366
Sse9I AATT 1 cut(s) 53
SstI GAGCTC 1 cut(s) 116
TaiI ACGT 1 cut(s) 180
TaqI TCGA 2 cut(s) 252, 257
TasI AATT 1 cut(s) 53
TseI GCWGC 1 cut(s) 11
TspDTI ATGAA 1 cut(s) 294
XceI RCATGY 3 cut(s) 104, 350, 366
Zsp2I ATGCAT 2 cut(s) 352, 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.