Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001295

Physical Location & Seq

Genomic Coordinates Forward (+)

23014781 .. 23017210

Gene Structure 2430 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG223400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAAGTTCATGAATCCTGCATGTCTTATCAATAAGCTAGGAAGAAGCCACTCCAAGAAGTCATACGAACGGTTGGTGCGTGAAGATGACCAGGTCGAGAGGTCCAAGAAGAAGCACGGTTCAGCTCCAAAAGGTTCTATAGATTTGTTCGTGGGGAAAGAGGAGAAGAAATACCCAGTTCCCCTCAAGTACTTTACACACCCAAAGCTCCAAGAACTCCTCAAAGAGTACCAAGAACCCGTGTTTGATCCAAGATTTGATGAGCCGATTGTGCTTGAATGTTCTACGGAAATCTTTGAGCAGTTGCTCCGTTATATCACAGTCTTCTACGAATTACTCTACGTACTGATGCTAGGCACCTTTAATTGCAAAAATATTATTATTTCAAATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

131

Amino Acids

15.46

Weight (kDa)

8.69

Isoelectric Point (pI)

54.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	24 - 106	2.2e-12	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001295)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12051 FvH4_5g32781 FvH4_6g21652
prunus_persica	Prupe.1G235700_v2.0.a1 Prupe.2G131400_v2.0.a1 Prupe.2G131500_v2.0.a1 Prupe.2G131600_v2.0.a1 Prupe.8G072300_v2.0.a1 Prupe.8G072400_v2.0.a1
rosa_laevigata	RLG00000023594 RLG00000023595 RLG00000023596
rosa_multiflora	Rmu_sc0000382.1_g000036 Rmu_sc0000382.1_g000038 Rmu_sc0002978.1_g000014 Rmu_sc0002978.1_g000017 Rmu_sc0002978.1_g000018 Rmu_sc0002978.1_g000021 Rmu_sc0015470.1_g000003 Rmu_sc0015470.1_g000005 Rmu_sc0015470.1_g000006 Rmu_sc0015470.1_g000008
rosa_roxburghii	Rroxscaffold_1G00044700 Rroxscaffold_6G00402540 Rroxscaffold_6G00402550 Rroxscaffold_6G00402560
rosa_rugosa	Rorug03G0172000 Rorug03G0172100 Rorug03G0172200.1 Rorug03G0172500 Rorug05G0152100 Rorug05G0152300
rosa_samantha	Rh1BG192300 Rh1DG220700 Rh3AG223400 Rh3AG223500 Rh3AG223800 Rh3BG256100 Rh3BG256200 Rh3BG256300 Rh3BG256600 Rh3CG252100 Rh3CG252200 Rh3CG252300 Rh3CG252400 Rh3DG248300 Rh3DG248400 Rh3DG248500 Rh3DG248600 Rh5BG246800 Rh5CG277900 Rh5DG255400
rosa_wichuraiana	Rw3G020040 Rw3G020050 Rw3G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	356
AclWI	GGATC	1 cut(s)	242
AfaI	GTAC	3 cut(s)	191, 230, 345
AgsI	TTSAA	2 cut(s)	278, 387
AjnI	CCWGG	1 cut(s)	90
AluBI	AGCT	3 cut(s)	37, 125, 208
AluI	AGCT	3 cut(s)	37, 125, 208
AlwI	GGATC	1 cut(s)	242
AspS9I	GGNCC	1 cut(s)	102
AvaII	GGWCC	1 cut(s)	102
BanI	GGYRCC	1 cut(s)	356
BbsI	GAAGAC	1 cut(s)	316
BciT130I	CCWGG	1 cut(s)	92
BfaI	CTAG	2 cut(s)	38, 353
BfmI	CTRYAG	1 cut(s)	138
BmcAI	AGTACT	1 cut(s)	191
Bme1390I	CCNGG	1 cut(s)	92
Bme18I	GGWCC	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	102
BmiI	GGNNCC	1 cut(s)	358
BmrFI	CCNGG	1 cut(s)	92
BmrI	ACTGGG	1 cut(s)	170
BmsI	GCATC	1 cut(s)	339
BmuI	ACTGGG	1 cut(s)	170
BpiI	GAAGAC	1 cut(s)	316
BpuEI	CTTGAG	1 cut(s)	170
BsaAI	YACGTR	1 cut(s)	343
Bse1I	ACTGG	1 cut(s)	176
BseBI	CCWGG	1 cut(s)	92
BseNI	ACTGG	1 cut(s)	176
BseRI	GAGGAG	2 cut(s)	176, 209
BshNI	GGYRCC	1 cut(s)	356
Bsp143I	GATC	1 cut(s)	247
BspHI	TCATGA	1 cut(s)	9
BspLI	GGNNCC	1 cut(s)	358
BspPI	GGATC	1 cut(s)	242
BspT107I	GGYRCC	1 cut(s)	356
BsrI	ACTGG	1 cut(s)	176
BssMI	GATC	1 cut(s)	247
Bst2UI	CCWGG	1 cut(s)	92
Bst4CI	ACNGT	3 cut(s)	72, 119, 322
BstBAI	YACGTR	1 cut(s)	343
BstKTI	GATC	1 cut(s)	250
BstMBI	GATC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	1 cut(s)	271
BstNI	CCWGG	1 cut(s)	92
BstNSI	RCATGY	1 cut(s)	24
BstSCI	CCNGG	1 cut(s)	90
BstSFI	CTRYAG	1 cut(s)	138
BstSNI	TACGTA	1 cut(s)	343
BstV2I	GAAGAC	1 cut(s)	316
CciI	TCATGA	1 cut(s)	9
Cfr13I	GGNCC	1 cut(s)	102
CsiI	ACCWGGT	1 cut(s)	90
Csp6I	GTAC	3 cut(s)	190, 229, 344
CviAII	CATG	2 cut(s)	10, 21
CviJI	RGCY	5 cut(s)	37, 48, 125, 208, 265
CviKI_1	RGCY	5 cut(s)	37, 48, 125, 208, 265
CviQI	GTAC	3 cut(s)	190, 229, 344
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
Eco105I	TACGTA	1 cut(s)	343
Eco47I	GGWCC	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	90
FaeI	CATG	2 cut(s)	13, 24
FaiI	YATR	5 cut(s)	11, 22, 64, 140, 315
FatI	CATG	2 cut(s)	9, 20
FspBI	CTAG	2 cut(s)	38, 353
Hin1II	CATG	2 cut(s)	13, 24
HinfI	GANTC	1 cut(s)	13
Hpy188III	TCNNGA	2 cut(s)	10, 97
HpyCH4III	ACNGT	3 cut(s)	72, 119, 322
HpyCH4IV	ACGT	1 cut(s)	342
HpyCH4V	TGCA	2 cut(s)	20, 369
HpyF10VI	GCNNNNNNNGC	1 cut(s)	271
HpySE526I	ACGT	1 cut(s)	342
Hsp92II	CATG	2 cut(s)	13, 24
Kzo9I	GATC	1 cut(s)	247
LmnI	GCTCC	3 cut(s)	130, 213, 312
LpnPI	CCDG	4 cut(s)	30, 77, 104, 189
LweI	GCATC	1 cut(s)	339
MabI	ACCWGGT	1 cut(s)	90
MaeI	CTAG	2 cut(s)	38, 353
MaeII	ACGT	1 cut(s)	342
MalI	GATC	1 cut(s)	249
MboI	GATC	1 cut(s)	247
MboII	GAAGA	5 cut(s)	54, 95, 121, 178, 316
MluCI	AATT	2 cut(s)	332, 364
MnlI	CCTC	4 cut(s)	93, 154, 194, 230
MseI	TTAA	2 cut(s)	363, 394
MspR9I	CCNGG	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	92
MwoI	GCNNNNNNNGC	1 cut(s)	271
NdeII	GATC	1 cut(s)	247
NlaIII	CATG	2 cut(s)	13, 24
NlaIV	GGNNCC	1 cut(s)	358
NspI	RCATGY	1 cut(s)	24
PagI	TCATGA	1 cut(s)	9
PcsI	WCGNNNNNNNCGW	1 cut(s)	76
PfeI	GAWTC	1 cut(s)	13
PflFI	GACNNNGTC	1 cut(s)	92
Ppu21I	YACGTR	1 cut(s)	343
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PspN4I	GGNNCC	1 cut(s)	358
PspPI	GGNCC	1 cut(s)	102
PsyI	GACNNNGTC	1 cut(s)	92
RsaI	GTAC	3 cut(s)	191, 230, 345
RsaNI	GTAC	3 cut(s)	190, 229, 344
SaqAI	TTAA	2 cut(s)	363, 394
Sau3AI	GATC	1 cut(s)	247
Sau96I	GGNCC	1 cut(s)	102
ScaI	AGTACT	1 cut(s)	191
ScrFI	CCNGG	1 cut(s)	92
SetI	ASST	8 cut(s)	39, 96, 104, 127, 136, 210, 345, 362
SexAI	ACCWGGT	1 cut(s)	90
SfaNI	GCATC	1 cut(s)	339
SfcI	CTRYAG	1 cut(s)	138
SinI	GGWCC	1 cut(s)	102
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
SnaBI	TACGTA	1 cut(s)	343
Sse9I	AATT	2 cut(s)	332, 364
SspI	AATATT	2 cut(s)	376, 391
SspMI	CTAG	2 cut(s)	38, 353
StyD4I	CCNGG	1 cut(s)	90
TaaI	ACNGT	3 cut(s)	72, 119, 322
TaiI	ACGT	1 cut(s)	345
TaqI	TCGA	1 cut(s)	96
TasI	AATT	2 cut(s)	332, 364
TatI	WGTACW	1 cut(s)	189
TfiI	GAWTC	1 cut(s)	13
Tru1I	TTAA	2 cut(s)	363, 394
Tru9I	TTAA	2 cut(s)	363, 394
TspDTI	ATGAA	2 cut(s)	17, 26
TspGWI	ACGGA	2 cut(s)	299, 302
Tth111I	GACNNNGTC	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	102
XceI	RCATGY	1 cut(s)	24
XspI	CTAG	2 cut(s)	38, 353
ZrmI	AGTACT	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.