Rh1DG220700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
43002220 .. 43004649
2430 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG220700.1

Sequence Viewer

Length: 309 bp
ATGACATATAATCATCTCAAAGAAAGAATCAATAGCAGCTGGTCTTTGAAGCAGGAACTAAAATCAACTATTAATGGAGATAGCACCCCAAATAGGTTTGCTAAAAAACTGCAGAAGTTCAAGCCTTCAAGGATACTAACCTTTCCTCCCACCATGCTCTACTCCGATTTGATCATAGCAAAATCAACCAGAAAACACAGAACACCAACAACAACAGAGCCCATCCCTAGCTACTATGCCTCGTACTTCTCACCTTGGGCAGATCGGACTGCTTCTCTCTCTCTCTCTCTCTCTCTCTCAAATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.66

Weight (kDa)

10.12

Isoelectric Point (pI)

32.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 1 cut(s) 93
AgsI TTSAA 3 cut(s) 49, 121, 129
AluBI AGCT 2 cut(s) 39, 231
AluI AGCT 2 cut(s) 39, 231
ApeKI GCWGC 1 cut(s) 36
AseI ATTAAT 1 cut(s) 72
AsuHPI GGTGA 1 cut(s) 243
BanII GRGCYC 1 cut(s) 222
BbvI GCAGC 1 cut(s) 48
BccI CCATC 1 cut(s) 230
BciVI GTATCC 1 cut(s) 126
BclI TGATCA 1 cut(s) 171
BfaI CTAG 1 cut(s) 228
BfmI CTRYAG 1 cut(s) 110
BfuI GTATCC 1 cut(s) 126
BisI GCNGC 1 cut(s) 37
BlsI GCNGC 1 cut(s) 38
BsaJI CCNNGG 1 cut(s) 254
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bsc4I CCNNNNNNNGG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 254
BseGI GGATG 1 cut(s) 222
BseLI CCNNNNNNNGG 1 cut(s) 93
BseXI GCAGC 1 cut(s) 48
BslI CCNNNNNNNGG 1 cut(s) 93
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 2 cut(s) 171, 262
BspMAI CTGCAG 1 cut(s) 114
BssECI CCNNGG 1 cut(s) 254
BssMI GATC 2 cut(s) 171, 262
BssT1I CCWWGG 1 cut(s) 254
BstF5I GGATG 1 cut(s) 222
BstKTI GATC 2 cut(s) 174, 265
BstMBI GATC 2 cut(s) 171, 262
BstSFI CTRYAG 1 cut(s) 110
BstV1I GCAGC 1 cut(s) 48
BsuI GTATCC 1 cut(s) 126
BtsCI GGATG 1 cut(s) 222
Csp6I GTAC 1 cut(s) 244
CviAII CATG 1 cut(s) 154
CviJI RGCY 4 cut(s) 39, 124, 220, 231
CviKI_1 RGCY 4 cut(s) 39, 124, 220, 231
CviQI GTAC 1 cut(s) 244
DpnI GATC 2 cut(s) 173, 264
DpnII GATC 2 cut(s) 171, 262
Eco130I CCWWGG 1 cut(s) 254
Eco24I GRGCYC 1 cut(s) 222
EcoT14I CCWWGG 1 cut(s) 254
EcoT38I GRGCYC 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 254
FaeI CATG 1 cut(s) 157
FaiI YATR 5 cut(s) 7, 9, 155, 176, 237
FatI CATG 1 cut(s) 153
FbaI TGATCA 1 cut(s) 171
Fnu4HI GCNGC 1 cut(s) 37
FokI GGATG 1 cut(s) 209
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 37
FspBI CTAG 1 cut(s) 228
GluI GCNGC 1 cut(s) 37
Hin1II CATG 1 cut(s) 157
HinfI GANTC 1 cut(s) 27
HphI GGTGA 1 cut(s) 243
Hpy188I TCNGA 2 cut(s) 166, 267
HpyAV CCTTC 1 cut(s) 135
HpyCH4V TGCA 1 cut(s) 112
Hsp92II CATG 1 cut(s) 157
Ksp22I TGATCA 1 cut(s) 171
Kzo9I GATC 2 cut(s) 171, 262
LpnPI CCDG 3 cut(s) 25, 38, 202
Lsp1109I GCAGC 1 cut(s) 48
MaeI CTAG 1 cut(s) 228
MalI GATC 2 cut(s) 173, 264
MboI GATC 2 cut(s) 171, 262
MhlI GDGCHC 1 cut(s) 222
MnlI CCTC 2 cut(s) 156, 250
MseI TTAA 1 cut(s) 72
MspA1I CMGCKG 1 cut(s) 39
NdeII GATC 2 cut(s) 171, 262
NlaIII CATG 1 cut(s) 157
PfeI GAWTC 1 cut(s) 27
PkrI GCNGC 1 cut(s) 38
PshBI ATTAAT 1 cut(s) 72
PstI CTGCAG 1 cut(s) 114
PvuII CAGCTG 1 cut(s) 39
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 1 cut(s) 37
Sau3AI GATC 2 cut(s) 171, 262
SduI GDGCHC 1 cut(s) 222
SetI ASST 5 cut(s) 41, 98, 143, 233, 256
SfcI CTRYAG 1 cut(s) 110
SgeI CNNG 9 cut(s) 52, 65, 133, 141, 166, 201, 240, 253, 267
SspMI CTAG 1 cut(s) 228
StyI CCWWGG 1 cut(s) 254
TfiI GAWTC 1 cut(s) 27
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TseI GCWGC 1 cut(s) 36
VspI ATTAAT 1 cut(s) 72
XspI CTAG 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.