Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001295

Physical Location & Seq

Genomic Coordinates Reverse (-)

25767027 .. 25767407

Gene Structure 381 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023594

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGTTTCTCTTTTGAATTCCTTTCATCATCATTCCAAGCTAAGACTACCAGACTATATGACATTCATGAATCCTGCATGTCTTATCAAGAAGGCATATGATCGGTTGATACATGAAGATGACCATATCAAGAGCTCCAAGAAGAAGCATGGATCAACTCCAAAAGTTTTTGTAGATTTGTTTGTGGGCAAAGAGGAGAAGAAATTCTCTGTTTCTCTCGAGTACTTTTTACATCCAAAGCTCCAAGAACTCCTCAAGGAGTACCGAGAACCCGTATTCGATCCAAGATGTGATGAGCCGATTGTGCTTGAACATTGTTCTACGCAGACCTTTGATCAATTACTCTATAATATCGCGATGGATATCGATAAGGAATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

127

Amino Acids

14.96

Weight (kDa)

6.43

Isoelectric Point (pI)

38.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	44 - 115	9.8e-08	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001295)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12051 FvH4_5g32781 FvH4_6g21652
prunus_persica	Prupe.1G235700_v2.0.a1 Prupe.2G131400_v2.0.a1 Prupe.2G131500_v2.0.a1 Prupe.2G131600_v2.0.a1 Prupe.8G072300_v2.0.a1 Prupe.8G072400_v2.0.a1
rosa_laevigata	RLG00000023594 RLG00000023595 RLG00000023596
rosa_multiflora	Rmu_sc0000382.1_g000036 Rmu_sc0000382.1_g000038 Rmu_sc0002978.1_g000014 Rmu_sc0002978.1_g000017 Rmu_sc0002978.1_g000018 Rmu_sc0002978.1_g000021 Rmu_sc0015470.1_g000003 Rmu_sc0015470.1_g000005 Rmu_sc0015470.1_g000006 Rmu_sc0015470.1_g000008
rosa_roxburghii	Rroxscaffold_1G00044700 Rroxscaffold_6G00402540 Rroxscaffold_6G00402550 Rroxscaffold_6G00402560
rosa_rugosa	Rorug03G0172000 Rorug03G0172100 Rorug03G0172200.1 Rorug03G0172500 Rorug05G0152100 Rorug05G0152300
rosa_samantha	Rh1BG192300 Rh1DG220700 Rh3AG223400 Rh3AG223500 Rh3AG223800 Rh3BG256100 Rh3BG256200 Rh3BG256300 Rh3BG256600 Rh3CG252100 Rh3CG252200 Rh3CG252300 Rh3CG252400 Rh3DG248300 Rh3DG248400 Rh3DG248500 Rh3DG248600 Rh5BG246800 Rh5CG277900 Rh5DG255400
rosa_wichuraiana	Rw3G020040 Rw3G020050 Rw3G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	356
AclWI	GGATC	2 cut(s)	160, 275
AcsI	RAATTY	2 cut(s)	16, 203
AfaI	GTAC	2 cut(s)	224, 263
AgsI	TTSAA	2 cut(s)	16, 311
AluBI	AGCT	3 cut(s)	40, 135, 241
AluI	AGCT	3 cut(s)	40, 135, 241
Alw21I	GWGCWC	1 cut(s)	137
AlwI	GGATC	2 cut(s)	160, 275
Ama87I	CYCGRG	1 cut(s)	218
ApoI	RAATTY	2 cut(s)	16, 203
Asp700I	GAANNNNTTC	1 cut(s)	203
AvaI	CYCGRG	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	137
Bbv12I	GWGCWC	1 cut(s)	137
BccI	CCATC	1 cut(s)	352
BclI	TGATCA	1 cut(s)	334
BmcAI	AGTACT	1 cut(s)	224
BmeT110I	CYCGRG	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	239
Bsa29I	ATCGAT	1 cut(s)	366
BsaBI	GATNNNNATC	1 cut(s)	362
Bse8I	GATNNNNATC	1 cut(s)	362
BseCI	ATCGAT	1 cut(s)	366
BseGI	GGATG	1 cut(s)	232
BseJI	GATNNNNATC	1 cut(s)	362
BseRI	GAGGAG	2 cut(s)	209, 242
Bsh1236I	CGCG	1 cut(s)	356
BshVI	ATCGAT	1 cut(s)	366
BsiHKAI	GWGCWC	1 cut(s)	137
BsiHKCI	CYCGRG	1 cut(s)	218
BsoBI	CYCGRG	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	137
Bsp143I	GATC	4 cut(s)	100, 152, 280, 334
Bsp68I	TCGCGA	1 cut(s)	356
BspDI	ATCGAT	1 cut(s)	366
BspFNI	CGCG	1 cut(s)	356
BspHI	TCATGA	1 cut(s)	66
BspPI	GGATC	2 cut(s)	160, 275
BssMI	GATC	4 cut(s)	100, 152, 280, 334
BstDEI	CTNAG	1 cut(s)	41
BstF5I	GGATG	1 cut(s)	232
BstFNI	CGCG	1 cut(s)	356
BstKTI	GATC	4 cut(s)	103, 155, 283, 337
BstMBI	GATC	4 cut(s)	100, 152, 280, 334
BstMWI	GCNNNNNNNGC	1 cut(s)	304
BstNSI	RCATGY	1 cut(s)	81
BstUI	CGCG	1 cut(s)	356
Bsu15I	ATCGAT	1 cut(s)	366
BsuTUI	ATCGAT	1 cut(s)	366
BtgZI	GCGATG	1 cut(s)	371
BtsCI	GGATG	1 cut(s)	232
BtuMI	TCGCGA	1 cut(s)	356
CciI	TCATGA	1 cut(s)	66
ClaI	ATCGAT	1 cut(s)	366
Csp6I	GTAC	2 cut(s)	223, 262
CviAII	CATG	4 cut(s)	67, 78, 113, 149
CviJI	RGCY	4 cut(s)	40, 135, 241, 298
CviKI_1	RGCY	4 cut(s)	40, 135, 241, 298
CviQI	GTAC	2 cut(s)	223, 262
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	4 cut(s)	102, 154, 282, 336
DpnII	GATC	4 cut(s)	100, 152, 280, 334
Ecl136II	GAGCTC	1 cut(s)	135
Eco24I	GRGCYC	1 cut(s)	137
Eco32I	GATATC	1 cut(s)	364
Eco53kI	GAGCTC	1 cut(s)	135
Eco88I	CYCGRG	1 cut(s)	218
EcoICRI	GAGCTC	1 cut(s)	135
EcoRI	GAATTC	1 cut(s)	16
EcoRV	GATATC	1 cut(s)	364
EcoT38I	GRGCYC	1 cut(s)	137
FaeI	CATG	4 cut(s)	70, 81, 116, 152
FatI	CATG	4 cut(s)	66, 77, 112, 148
FauNDI	CATATG	1 cut(s)	97
FbaI	TGATCA	1 cut(s)	334
FokI	GGATG	1 cut(s)	219
FriOI	GRGCYC	1 cut(s)	137
Hin1II	CATG	4 cut(s)	70, 81, 116, 152
HinfI	GANTC	1 cut(s)	70
Hpy188III	TCNNGA	5 cut(s)	67, 88, 130, 218, 355
HpyAV	CCTTC	1 cut(s)	85
HpyCH4V	TGCA	1 cut(s)	77
HpyF10VI	GCNNNNNNNGC	1 cut(s)	304
HpyF3I	CTNAG	1 cut(s)	41
Hsp92II	CATG	4 cut(s)	70, 81, 116, 152
Ksp22I	TGATCA	1 cut(s)	334
Kzo9I	GATC	4 cut(s)	100, 152, 280, 334
LmnI	GCTCC	2 cut(s)	140, 246
LpnPI	CCDG	2 cut(s)	63, 87
MalI	GATC	4 cut(s)	102, 154, 282, 336
MboI	GATC	4 cut(s)	100, 152, 280, 334
MboII	GAAGA	3 cut(s)	128, 154, 211
MhlI	GDGCHC	1 cut(s)	137
MluCI	AATT	3 cut(s)	16, 203, 338
MnlI	CCTC	2 cut(s)	187, 263
MroXI	GAANNNNTTC	1 cut(s)	203
MseI	TTAA	1 cut(s)	379
MslI	CAYNNNNRTG	1 cut(s)	117
MvnI	CGCG	1 cut(s)	356
MwoI	GCNNNNNNNGC	1 cut(s)	304
NdeI	CATATG	1 cut(s)	97
NdeII	GATC	4 cut(s)	100, 152, 280, 334
NlaIII	CATG	4 cut(s)	70, 81, 116, 152
NruI	TCGCGA	1 cut(s)	356
NspI	RCATGY	1 cut(s)	81
PaeR7I	CTCGAG	1 cut(s)	218
PagI	TCATGA	1 cut(s)	66
PdmI	GAANNNNTTC	1 cut(s)	203
PfeI	GAWTC	1 cut(s)	70
Psp124BI	GAGCTC	1 cut(s)	137
RruI	TCGCGA	1 cut(s)	356
RsaI	GTAC	2 cut(s)	224, 263
RsaNI	GTAC	2 cut(s)	223, 262
RseI	CAYNNNNRTG	1 cut(s)	117
SacI	GAGCTC	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	379
Sau3AI	GATC	4 cut(s)	100, 152, 280, 334
ScaI	AGTACT	1 cut(s)	224
SduI	GDGCHC	1 cut(s)	137
SetI	ASST	4 cut(s)	42, 137, 243, 332
Sfr274I	CTCGAG	1 cut(s)	218
SlaI	CTCGAG	1 cut(s)	218
SmiMI	CAYNNNNRTG	1 cut(s)	117
SmlI	CTYRAG	2 cut(s)	218, 254
SmoI	CTYRAG	2 cut(s)	218, 254
Sse9I	AATT	3 cut(s)	16, 203, 338
SspI	AATATT	1 cut(s)	377
SstI	GAGCTC	1 cut(s)	137
TaqI	TCGA	3 cut(s)	219, 279, 366
TasI	AATT	3 cut(s)	16, 203, 338
TatI	WGTACW	1 cut(s)	222
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	1 cut(s)	379
Tru9I	TTAA	1 cut(s)	379
TspDTI	ATGAA	4 cut(s)	14, 55, 83, 129
XapI	RAATTY	2 cut(s)	16, 203
XceI	RCATGY	1 cut(s)	81
XhoI	CTCGAG	1 cut(s)	218
XmnI	GAANNNNTTC	1 cut(s)	203
ZrmI	AGTACT	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.