Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001295

Physical Location & Seq

Genomic Coordinates Reverse (-)

30003215 .. 30005970

Gene Structure 2756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG255400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGAATCTTTTCGAAAAAGTCAGGTTGTTCATCAAGAAGCAACGAGGATTTCGAAAAGGTTACGTACCTTTGCTCATCGGCAAAGAAAGAAAGAAGTACTACGTTCCTGTGAAGTATCTATCCTATCCAACGTTACAAGAACTGATCATCAAGAACCAACCAGATCAGGATATATATGATCCAAGAATTGAAGGGCCTCTTGGGCTTCCATGTTTAAGAGCCGACTCGTTTGACCAGTTGCTGAAGAGCTTCAAGAAATTCACCCCAAATAGGTTTGCTAAAAAACTGCAGAAGTTCAAGCCTTCAAGGATACTAACCTTTCCTCCCACCATGCTCTACTCCGATTTCATCATAGCAAAATCAACCAGAAAACACAGAACACCAACAACAACAGAGCCCATCCTCAGCTACTATGCCTATTACTTCTCACCTTGGGCGTTTGAAATCGCCGAAATCTTGGTTGGAATTCTTGACATCTCTCCAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

162

Amino Acids

19.11

Weight (kDa)

9.85

Isoelectric Point (pI)

44.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	18 - 82	5.9e-07	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001295)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12051 FvH4_5g32781 FvH4_6g21652
prunus_persica	Prupe.1G235700_v2.0.a1 Prupe.2G131400_v2.0.a1 Prupe.2G131500_v2.0.a1 Prupe.2G131600_v2.0.a1 Prupe.8G072300_v2.0.a1 Prupe.8G072400_v2.0.a1
rosa_laevigata	RLG00000023594 RLG00000023595 RLG00000023596
rosa_multiflora	Rmu_sc0000382.1_g000036 Rmu_sc0000382.1_g000038 Rmu_sc0002978.1_g000014 Rmu_sc0002978.1_g000017 Rmu_sc0002978.1_g000018 Rmu_sc0002978.1_g000021 Rmu_sc0015470.1_g000003 Rmu_sc0015470.1_g000005 Rmu_sc0015470.1_g000006 Rmu_sc0015470.1_g000008
rosa_roxburghii	Rroxscaffold_1G00044700 Rroxscaffold_6G00402540 Rroxscaffold_6G00402550 Rroxscaffold_6G00402560
rosa_rugosa	Rorug03G0172000 Rorug03G0172100 Rorug03G0172200.1 Rorug03G0172500 Rorug05G0152100 Rorug05G0152300
rosa_samantha	Rh1BG192300 Rh1DG220700 Rh3AG223400 Rh3AG223500 Rh3AG223800 Rh3BG256100 Rh3BG256200 Rh3BG256300 Rh3BG256600 Rh3CG252100 Rh3CG252200 Rh3CG252300 Rh3CG252400 Rh3DG248300 Rh3DG248400 Rh3DG248500 Rh3DG248600 Rh5BG246800 Rh5CG277900 Rh5DG255400
rosa_wichuraiana	Rw3G020040 Rw3G020050 Rw3G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	131
AclWI	GGATC	1 cut(s)	173
AcsI	RAATTY	2 cut(s)	257, 465
AcuI	CTGAAG	1 cut(s)	263
AfaI	GTAC	2 cut(s)	66, 98
AfiI	CCNNNNNNNGG	1 cut(s)	270
AgsI	TTSAA	5 cut(s)	191, 253, 298, 306, 443
AjuI	GAANNNNNNNTTGG	4 cut(s)	183, 215, 444, 476
AluBI	AGCT	2 cut(s)	249, 408
AluI	AGCT	2 cut(s)	249, 408
AlwI	GGATC	1 cut(s)	173
AlwNI	CAGNNNCTG	1 cut(s)	241
AoxI	GGCC	1 cut(s)	194
ApoI	RAATTY	2 cut(s)	257, 465
Asp700I	GAANNNNTTC	2 cut(s)	8, 248
AspS9I	GGNCC	1 cut(s)	194
AsuHPI	GGTGA	2 cut(s)	253, 420
AsuII	TTCGAA	2 cut(s)	12, 52
BanII	GRGCYC	1 cut(s)	399
BbvCI	CCTCAGC	1 cut(s)	404
BccI	CCATC	1 cut(s)	407
BciVI	GTATCC	1 cut(s)	303
BclI	TGATCA	1 cut(s)	144
BfmI	CTRYAG	1 cut(s)	287
BfuI	GTATCC	1 cut(s)	303
BglI	GCCNNNNNGGC	1 cut(s)	202
BmcAI	AGTACT	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	194
Bpu10I	CCTNAGC	1 cut(s)	404
Bpu14I	TTCGAA	2 cut(s)	12, 52
BsaAI	YACGTR	1 cut(s)	64
BsaJI	CCNNGG	1 cut(s)	431
BsaXI	ACNNNNNCTCC	2 cut(s)	307, 337
Bsc4I	CCNNNNNNNGG	1 cut(s)	270
Bse1I	ACTGG	1 cut(s)	235
BseDI	CCNNGG	1 cut(s)	431
BseGI	GGATG	1 cut(s)	399
BseLI	CCNNNNNNNGG	1 cut(s)	270
BseMII	CTCAG	1 cut(s)	418
BseNI	ACTGG	1 cut(s)	235
BshFI	GGCC	1 cut(s)	196
BslI	CCNNNNNNNGG	1 cut(s)	270
BsnI	GGCC	1 cut(s)	196
Bsp119I	TTCGAA	2 cut(s)	12, 52
Bsp1286I	GDGCHC	1 cut(s)	399
Bsp143I	GATC	3 cut(s)	144, 163, 178
BspANI	GGCC	1 cut(s)	196
BspCNI	CTCAG	1 cut(s)	417
BspMAI	CTGCAG	1 cut(s)	291
BspPI	GGATC	1 cut(s)	173
BspQI	GCTCTTC	1 cut(s)	239
BspT104I	TTCGAA	2 cut(s)	12, 52
BsrI	ACTGG	1 cut(s)	235
BssECI	CCNNGG	1 cut(s)	431
BssMI	GATC	3 cut(s)	144, 163, 178
BssT1I	CCWWGG	1 cut(s)	431
Bst6I	CTCTTC	1 cut(s)	239
BstBAI	YACGTR	1 cut(s)	64
BstBI	TTCGAA	2 cut(s)	12, 52
BstDEI	CTNAG	1 cut(s)	404
BstF5I	GGATG	1 cut(s)	399
BstKTI	GATC	3 cut(s)	147, 166, 181
BstMBI	GATC	3 cut(s)	144, 163, 178
BstMWI	GCNNNNNNNGC	1 cut(s)	202
BstSFI	CTRYAG	1 cut(s)	287
BstSNI	TACGTA	1 cut(s)	64
BsuI	GTATCC	1 cut(s)	303
BsuRI	GGCC	1 cut(s)	196
BtsCI	GGATG	1 cut(s)	399
CaiI	CAGNNNCTG	1 cut(s)	241
Cfr13I	GGNCC	1 cut(s)	194
Csp6I	GTAC	2 cut(s)	65, 97
CviAII	CATG	2 cut(s)	210, 331
CviJI	RGCY	7 cut(s)	196, 205, 221, 249, 301, 397, 408
CviKI_1	RGCY	7 cut(s)	196, 205, 221, 249, 301, 397, 408
CviQI	GTAC	2 cut(s)	65, 97
DdeI	CTNAG	1 cut(s)	404
DpnI	GATC	3 cut(s)	146, 165, 180
DpnII	GATC	3 cut(s)	144, 163, 178
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
Eco105I	TACGTA	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	431
Eco24I	GRGCYC	1 cut(s)	399
Eco57I	CTGAAG	1 cut(s)	263
EcoO109I	RGGNCCY	1 cut(s)	194
EcoRI	GAATTC	1 cut(s)	465
EcoT14I	CCWWGG	1 cut(s)	431
EcoT38I	GRGCYC	1 cut(s)	399
ErhI	CCWWGG	1 cut(s)	431
FaeI	CATG	2 cut(s)	213, 334
FaiI	YATR	7 cut(s)	173, 175, 177, 211, 332, 353, 414
FalI	AAGNNNNNCTT	2 cut(s)	183, 215
FatI	CATG	2 cut(s)	209, 330
FbaI	TGATCA	1 cut(s)	144
FokI	GGATG	1 cut(s)	386
FriOI	GRGCYC	1 cut(s)	399
HaeIII	GGCC	1 cut(s)	196
Hin1II	CATG	2 cut(s)	213, 334
HinfI	GANTC	2 cut(s)	4, 224
HphI	GGTGA	2 cut(s)	253, 420
Hpy188I	TCNGA	1 cut(s)	343
Hpy188III	TCNNGA	5 cut(s)	34, 151, 167, 253, 470
HpyAV	CCTTC	2 cut(s)	185, 312
HpyCH4IV	ACGT	3 cut(s)	63, 102, 131
HpyCH4V	TGCA	1 cut(s)	289
HpyF10VI	GCNNNNNNNGC	1 cut(s)	202
HpyF3I	CTNAG	1 cut(s)	404
HpySE526I	ACGT	3 cut(s)	63, 102, 131
Hsp92II	CATG	2 cut(s)	213, 334
Ksp22I	TGATCA	1 cut(s)	144
Kzo9I	GATC	3 cut(s)	144, 163, 178
LguI	GCTCTTC	1 cut(s)	239
LpnPI	CCDG	6 cut(s)	7, 120, 152, 174, 248, 379
MaeII	ACGT	3 cut(s)	63, 102, 131
MaeIII	GTNAC	2 cut(s)	59, 132
MalI	GATC	3 cut(s)	146, 165, 180
MboI	GATC	3 cut(s)	144, 163, 178
MboII	GAAGA	1 cut(s)	256
MhlI	GDGCHC	1 cut(s)	399
MluCI	AATT	4 cut(s)	186, 257, 465, 484
MlyI	GAGTC	1 cut(s)	218
MmeI	TCCRAC	2 cut(s)	152, 442
MnlI	CCTC	4 cut(s)	38, 207, 333, 413
MroXI	GAANNNNTTC	2 cut(s)	8, 248
MseI	TTAA	1 cut(s)	215
MwoI	GCNNNNNNNGC	1 cut(s)	202
NdeII	GATC	3 cut(s)	144, 163, 178
NlaIII	CATG	2 cut(s)	213, 334
NspV	TTCGAA	2 cut(s)	12, 52
PciSI	GCTCTTC	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	1 cut(s)	49
PdmI	GAANNNNTTC	2 cut(s)	8, 248
PfeI	GAWTC	1 cut(s)	4
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
Ppu21I	YACGTR	1 cut(s)	64
Psp1406I	AACGTT	1 cut(s)	131
PspPI	GGNCC	1 cut(s)	194
PstI	CTGCAG	1 cut(s)	291
PstNI	CAGNNNCTG	1 cut(s)	241
RsaI	GTAC	2 cut(s)	66, 98
RsaNI	GTAC	2 cut(s)	65, 97
SapI	GCTCTTC	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	215
Sau3AI	GATC	3 cut(s)	144, 163, 178
Sau96I	GGNCC	1 cut(s)	194
ScaI	AGTACT	1 cut(s)	98
SchI	GAGTC	1 cut(s)	218
SduI	GDGCHC	1 cut(s)	399
SfcI	CTRYAG	1 cut(s)	287
SfuI	TTCGAA	2 cut(s)	12, 52
SnaBI	TACGTA	1 cut(s)	64
Sse9I	AATT	4 cut(s)	186, 257, 465, 484
StyI	CCWWGG	1 cut(s)	431
TaiI	ACGT	3 cut(s)	66, 105, 134
TaqI	TCGA	2 cut(s)	12, 52
TasI	AATT	4 cut(s)	186, 257, 465, 484
TatI	WGTACW	1 cut(s)	96
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	215
Tru9I	TTAA	1 cut(s)	215
TspDTI	ATGAA	3 cut(s)	17, 19, 337
XapI	RAATTY	2 cut(s)	257, 465
XmnI	GAANNNNTTC	2 cut(s)	8, 248
ZrmI	AGTACT	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.