Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001295

Physical Location & Seq

Genomic Coordinates Reverse (-)

15219717 .. 15220539

Gene Structure 823 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g21652.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGAGGTTCATGATCAATCCTTCATCTCTTCTCAACAAGCTTGGAAGAAGCTACTCCAAGAAGTCATACGAAAGGCTCGTACGCGAAGATGACCAGGTCGAGAGGTCCAAGAAGGAGCATGGATCAACTCCAAAAGGTTCTATAGATTTGGTTGTGGGCAAAGAGGAGAAGAAATACTCAGTTTCCCTCAAGTACTTCACACACCCAAAGCTCCAAGAACTCCTCAAGAAATACCGAGAACCTGTGTTTGATCCAAGATTTGGTGAGCCGATCGTGCTTGAATATTGTTCTACGGAGACCTTTGATCAAGTAGGAATGAAGCTCTGTGCCGAGATTGAGTCCGGCAATATTATATTAGACAAGCCGGAGAACTGTTCCGACCCGTGCATGCATTCGTTTTCGCTATCGGGGTTCGAGTTCCACGCCCGTAACAGGGTGATGGTGATTCCGTGTGACGGACGCTACGCATCTATATCGAGATGGCTAATTACTAAATGGAAGGCTCCCACCTCTTCCGGTCACTCTCTATTGGGATTTGGGAATATGGAGTTGTTCGATATCATTGGCATTCTTTCGGCTGCTGAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

197

Amino Acids

22.35

Weight (kDa)

8.21

Isoelectric Point (pI)

40.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	28 - 104	3.4e-07	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001295)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12051 FvH4_5g32781 FvH4_6g21652
prunus_persica	Prupe.1G235700_v2.0.a1 Prupe.2G131400_v2.0.a1 Prupe.2G131500_v2.0.a1 Prupe.2G131600_v2.0.a1 Prupe.8G072300_v2.0.a1 Prupe.8G072400_v2.0.a1
rosa_laevigata	RLG00000023594 RLG00000023595 RLG00000023596
rosa_multiflora	Rmu_sc0000382.1_g000036 Rmu_sc0000382.1_g000038 Rmu_sc0002978.1_g000014 Rmu_sc0002978.1_g000017 Rmu_sc0002978.1_g000018 Rmu_sc0002978.1_g000021 Rmu_sc0015470.1_g000003 Rmu_sc0015470.1_g000005 Rmu_sc0015470.1_g000006 Rmu_sc0015470.1_g000008
rosa_roxburghii	Rroxscaffold_1G00044700 Rroxscaffold_6G00402540 Rroxscaffold_6G00402550 Rroxscaffold_6G00402560
rosa_rugosa	Rorug03G0172000 Rorug03G0172100 Rorug03G0172200.1 Rorug03G0172500 Rorug05G0152100 Rorug05G0152300
rosa_samantha	Rh1BG192300 Rh1DG220700 Rh3AG223400 Rh3AG223500 Rh3AG223800 Rh3BG256100 Rh3BG256200 Rh3BG256300 Rh3BG256600 Rh3CG252100 Rh3CG252200 Rh3CG252300 Rh3CG252400 Rh3DG248300 Rh3DG248400 Rh3DG248500 Rh3DG248600 Rh5BG246800 Rh5CG277900 Rh5DG255400
rosa_wichuraiana	Rw3G020040 Rw3G020050 Rw3G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	260
AccII	CGCG	1 cut(s)	84
AclWI	GGATC	2 cut(s)	130, 245
AfaI	GTAC	2 cut(s)	81, 194
AfiI	CCNNNNNNNGG	4 cut(s)	260, 432, 433, 455
AgsI	TTSAA	1 cut(s)	281
AjnI	CCWGG	1 cut(s)	93
AluBI	AGCT	4 cut(s)	40, 51, 211, 322
AluI	AGCT	4 cut(s)	40, 51, 211, 322
Alw26I	GTCTC	1 cut(s)	290
AlwI	GGATC	2 cut(s)	130, 245
ApeKI	GCWGC	1 cut(s)	578
AspS9I	GGNCC	1 cut(s)	105
AsuHPI	GGTGA	3 cut(s)	275, 448, 454
AvaII	GGWCC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	565
BccI	CCATC	2 cut(s)	433, 474
BcgI	CGANNNNNNTGC	2 cut(s)	456, 490
BciT130I	CCWGG	1 cut(s)	95
BclI	TGATCA	2 cut(s)	12, 304
BcoDI	GTCTC	1 cut(s)	290
BfmI	CTRYAG	1 cut(s)	141
BisI	GCNGC	1 cut(s)	579
BlsI	GCNGC	1 cut(s)	580
BmcAI	AGTACT	1 cut(s)	194
Bme1390I	CCNGG	1 cut(s)	95
Bme18I	GGWCC	1 cut(s)	105
BmgT120I	GGNCC	1 cut(s)	105
BmiI	GGNNCC	1 cut(s)	504
BmrFI	CCNGG	1 cut(s)	95
BmsI	GCATC	1 cut(s)	476
BpuEI	CTTGAG	2 cut(s)	173, 209
BsaI	GGTCTC	1 cut(s)	290
BsaWI	WCCGGW	1 cut(s)	515
Bsc4I	CCNNNNNNNGG	4 cut(s)	260, 432, 433, 455
BseBI	CCWGG	1 cut(s)	95
BseLI	CCNNNNNNNGG	4 cut(s)	260, 432, 433, 455
BseMII	CTCAG	1 cut(s)	192
BseRI	GAGGAG	2 cut(s)	179, 212
BseXI	GCAGC	1 cut(s)	565
Bsh1236I	CGCG	1 cut(s)	84
Bsh1285I	CGRYCG	1 cut(s)	273
BsiEI	CGRYCG	1 cut(s)	273
BsiSI	CCGG	3 cut(s)	342, 365, 516
BsiWI	CGTACG	1 cut(s)	79
BslI	CCNNNNNNNGG	4 cut(s)	260, 432, 433, 455
BsmAI	GTCTC	1 cut(s)	290
BsmI	GAATGC	2 cut(s)	391, 567
Bso31I	GGTCTC	1 cut(s)	290
Bsp143I	GATC	5 cut(s)	12, 122, 250, 270, 304
BspCNI	CTCAG	1 cut(s)	191
BspFNI	CGCG	1 cut(s)	84
BspHI	TCATGA	1 cut(s)	9
BspLI	GGNNCC	1 cut(s)	504
BspPI	GGATC	2 cut(s)	130, 245
BspTNI	GGTCTC	1 cut(s)	290
BssMI	GATC	5 cut(s)	12, 122, 250, 270, 304
Bst2UI	CCWGG	1 cut(s)	95
Bst4CI	ACNGT	1 cut(s)	374
Bst6I	CTCTTC	2 cut(s)	33, 517
BstC8I	GCNNGC	1 cut(s)	389
BstDEI	CTNAG	1 cut(s)	178
BstFNI	CGCG	1 cut(s)	84
BstKTI	GATC	5 cut(s)	15, 125, 253, 273, 307
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	5 cut(s)	12, 122, 250, 270, 304
BstMCI	CGRYCG	1 cut(s)	273
BstMWI	GCNNNNNNNGC	1 cut(s)	274
BstNI	CCWGG	1 cut(s)	95
BstNSI	RCATGY	1 cut(s)	391
BstSCI	CCNGG	1 cut(s)	93
BstSFI	CTRYAG	1 cut(s)	141
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	1 cut(s)	565
Cac8I	GCNNGC	1 cut(s)	389
CciI	TCATGA	1 cut(s)	9
Cfr13I	GGNCC	1 cut(s)	105
CseI	GACGC	1 cut(s)	468
CsiI	ACCWGGT	1 cut(s)	93
Csp6I	GTAC	2 cut(s)	80, 193
CviAII	CATG	3 cut(s)	10, 119, 388
CviQI	GTAC	2 cut(s)	80, 193
DdeI	CTNAG	1 cut(s)	178
DpnI	GATC	5 cut(s)	14, 124, 252, 272, 306
DpnII	GATC	5 cut(s)	12, 122, 250, 270, 304
Eam1104I	CTCTTC	2 cut(s)	33, 517
EarI	CTCTTC	2 cut(s)	33, 517
Eco31I	GGTCTC	1 cut(s)	290
Eco32I	GATATC	1 cut(s)	559
Eco47I	GGWCC	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	93
EcoRV	GATATC	1 cut(s)	559
EcoT22I	ATGCAT	1 cut(s)	393
FaeI	CATG	3 cut(s)	13, 122, 391
FaiI	YATR	8 cut(s)	11, 67, 120, 143, 353, 389, 473, 545
FatI	CATG	3 cut(s)	9, 118, 387
FbaI	TGATCA	2 cut(s)	12, 304
Fnu4HI	GCNGC	1 cut(s)	579
Fsp4HI	GCNGC	1 cut(s)	579
GluI	GCNGC	1 cut(s)	579
HapII	CCGG	3 cut(s)	342, 365, 516
HgaI	GACGC	1 cut(s)	468
Hin1II	CATG	3 cut(s)	13, 122, 391
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	2 cut(s)	338, 445
HpaII	CCGG	3 cut(s)	342, 365, 516
HphI	GGTGA	3 cut(s)	275, 448, 454
Hpy188I	TCNGA	1 cut(s)	379
Hpy188III	TCNNGA	4 cut(s)	10, 100, 226, 477
HpyAV	CCTTC	3 cut(s)	30, 106, 493
HpyCH4III	ACNGT	1 cut(s)	374
HpyCH4V	TGCA	2 cut(s)	387, 391
HpyF10VI	GCNNNNNNNGC	1 cut(s)	274
HpyF3I	CTNAG	1 cut(s)	178
Hsp92II	CATG	3 cut(s)	13, 122, 391
Ksp22I	TGATCA	2 cut(s)	12, 304
Kzo9I	GATC	5 cut(s)	12, 122, 250, 270, 304
LmnI	GCTCC	3 cut(s)	115, 216, 508
LpnPI	CCDG	7 cut(s)	80, 107, 255, 355, 378, 418, 529
Lsp1109I	GCAGC	1 cut(s)	565
LweI	GCATC	1 cut(s)	476
MabI	ACCWGGT	1 cut(s)	93
MaeIII	GTNAC	3 cut(s)	428, 452, 518
MalI	GATC	5 cut(s)	14, 124, 252, 272, 306
MboI	GATC	5 cut(s)	12, 122, 250, 270, 304
MboII	GAAGA	5 cut(s)	20, 57, 98, 181, 504
MluCI	AATT	2 cut(s)	486, 586
MlyI	GAGTC	1 cut(s)	347
MmeI	TCCRAC	1 cut(s)	402
MnlI	CCTC	5 cut(s)	96, 157, 197, 233, 520
Mph1103I	ATGCAT	1 cut(s)	393
MseI	TTAA	1 cut(s)	589
MspI	CCGG	3 cut(s)	342, 365, 516
MspR9I	CCNGG	1 cut(s)	95
Mva1269I	GAATGC	2 cut(s)	391, 567
MvaI	CCWGG	1 cut(s)	95
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	274
NdeII	GATC	5 cut(s)	12, 122, 250, 270, 304
NlaIII	CATG	3 cut(s)	13, 122, 391
NlaIV	GGNNCC	1 cut(s)	504
NmeAIII	GCCGAG	1 cut(s)	355
NmuCI	GTSAC	2 cut(s)	452, 518
NsiI	ATGCAT	1 cut(s)	393
NspI	RCATGY	1 cut(s)	391
PaeI	GCATGC	1 cut(s)	391
PagI	TCATGA	1 cut(s)	9
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PctI	GAATGC	2 cut(s)	391, 567
PfeI	GAWTC	1 cut(s)	445
Pfl23II	CGTACG	1 cut(s)	79
PflFI	GACNNNGTC	1 cut(s)	95
PflMI	CCANNNNNTGG	1 cut(s)	260
PkrI	GCNGC	1 cut(s)	580
Ple19I	CGATCG	1 cut(s)	273
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
Psp6I	CCWGG	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	93
PspLI	CGTACG	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	504
PspPI	GGNCC	1 cut(s)	105
PsyI	GACNNNGTC	1 cut(s)	95
PvuI	CGATCG	1 cut(s)	273
RsaI	GTAC	2 cut(s)	81, 194
RsaNI	GTAC	2 cut(s)	80, 193
SaqAI	TTAA	1 cut(s)	589
SatI	GCNGC	1 cut(s)	579
Sau3AI	GATC	5 cut(s)	12, 122, 250, 270, 304
Sau96I	GGNCC	1 cut(s)	105
ScaI	AGTACT	1 cut(s)	194
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	1 cut(s)	95
SexAI	ACCWGGT	1 cut(s)	93
SfaNI	GCATC	1 cut(s)	476
SfcI	CTRYAG	1 cut(s)	141
SinI	GGWCC	1 cut(s)	105
SmlI	CTYRAG	2 cut(s)	188, 224
SmoI	CTYRAG	2 cut(s)	188, 224
SphI	GCATGC	1 cut(s)	391
Sse9I	AATT	2 cut(s)	486, 586
SspI	AATATT	2 cut(s)	284, 349
StyD4I	CCNGG	1 cut(s)	93
TaaI	ACNGT	1 cut(s)	374
TaqI	TCGA	4 cut(s)	99, 414, 476, 555
TasI	AATT	2 cut(s)	486, 586
TatI	WGTACW	1 cut(s)	192
TfiI	GAWTC	1 cut(s)	445
Tru1I	TTAA	1 cut(s)	589
Tru9I	TTAA	1 cut(s)	589
TseFI	GTSAC	2 cut(s)	452, 518
TseI	GCWGC	1 cut(s)	578
Tsp45I	GTSAC	2 cut(s)	452, 518
TspDTI	ATGAA	2 cut(s)	12, 332
TspGWI	ACGGA	3 cut(s)	308, 438, 471
Tth111I	GACNNNGTC	1 cut(s)	95
Van91I	CCANNNNNTGG	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	105
XceI	RCATGY	1 cut(s)	391
ZrmI	AGTACT	1 cut(s)	194
Zsp2I	ATGCAT	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.