Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0014159

Physical Location & Seq

Genomic Coordinates Reverse (-)

15451571 .. 15452991

Gene Structure 1421 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g21840.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCGACCCCCTCTTTCCTCTCGAGCTTGAAATACTCGGACAGTCTCACAGTCGTCGGCATCTCCATCTGCACCGCCGTAATCTGCGAGGCCATCTCATGGGTCCTCATCTACCGAACCAACTCCTACAAGTCCCTCCGATCCTCCATCGACAAGGCCGCCAAGAAGCTCGAGACCATGAAGACCGAATCCACCACCGCCAAAATTACCAAAAAGTCCAAGACCAAGAAGATCGACCGCGTCGAGACCAGCCTCAAGGAGTCTAGCCGCGACCTCTCCCTCTTCAAGTTCAAGTCCGGCGCCGTCGTCGCCGTCGTCCTCTTCGTCGTCTTCGGCCTTCTCAACTCGCTCTTCGAGGGCAAGGCGGTCGCGAAATTACCTTTTAAGCCCTTCGGGTTGGTGATGAAGATGAGCCACAGAGGCCTGCAGGGGGACGATCCCACGGATTGCTCGATGGCATTTTTGTACTTTCTGTGCTCCATCAGTATTCGGACCAATTTGCAGAAGTTCTTGGGCTTCTCGCCGCCCCGAGGTGCCAGTGCCGGGTTGTTCCCCATGCCCGACCCGAAAACCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0006950 GO:0006983 GO:0006984 GO:0007154 GO:0007165 GO:0008150 GO:0008324 GO:0009607 GO:0009987 GO:0012505 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0019725 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0030003 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032469 GO:0033554 GO:0034220 GO:0034976 GO:0042175 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071216 GO:0072503 GO:0072507 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF106

Protein Analysis

193

Amino Acids

21.06

Weight (kDa)

9.79

Isoelectric Point (pI)

28.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMC3_TMCO1	PF01956	16 - 174	8.4e-33	Integral membrane protein EMC3/TMCO1-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12030 AT5G06660
fragaria_vesca	FvH4_6g21840
malus_domestica	MD00G1019800.v1.1 MD12G1054500.v1.1 MD14G1053500.v1.1
prunus_persica	Prupe.7G082200_v2.0.a1
pyrus_communis	pycom11g10000 pycom12g04750
rosa_chinensis	RchiOBHm_Chr3g0479191
rosa_laevigata	RLG00000023597
rosa_multiflora	Rmu_sc0002978.1_g000022 Rmu_sc0015470.1_g000009
rosa_roxburghii	Rroxscaffold_6G00402570
rosa_rugosa	Rorug03G0172000
rosa_samantha	Rh3CG252000
rosa_wichuraiana	Rw3G020030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	299, 533
AccB7I	CCANNNNNTGG	1 cut(s)	99
AccII	CGCG	3 cut(s)	240, 270, 371
AciI	CCGC	7 cut(s)	75, 159, 198, 238, 268, 365, 524
AclWI	GGATC	2 cut(s)	135, 431
AcyI	GRCGYC	1 cut(s)	300
AfaI	GTAC	1 cut(s)	467
AfiI	CCNNNNNNNGG	4 cut(s)	99, 430, 530, 543
AgsI	TTSAA	3 cut(s)	31, 286, 292
AluBI	AGCT	2 cut(s)	27, 169
AluI	AGCT	2 cut(s)	27, 169
Alw21I	GWGCWC	1 cut(s)	479
Alw26I	GTCTC	3 cut(s)	50, 167, 239
AlwI	GGATC	2 cut(s)	135, 431
Ama87I	CYCGRG	3 cut(s)	22, 170, 528
AoxI	GGCC	4 cut(s)	90, 156, 334, 421
AspLEI	GCGC	1 cut(s)	302
AspS9I	GGNCC	2 cut(s)	103, 492
AsuC2I	CCSGG	1 cut(s)	544
AsuHPI	GGTGA	1 cut(s)	412
AvaI	CYCGRG	3 cut(s)	22, 170, 528
AvaII	GGWCC	2 cut(s)	103, 492
BanI	GGYRCC	2 cut(s)	299, 533
BbsI	GAAGAC	2 cut(s)	188, 322
Bbv12I	GWGCWC	1 cut(s)	479
BccI	CCATC	5 cut(s)	74, 101, 155, 448, 488
BceAI	ACGGC	3 cut(s)	62, 287, 296
BcgI	CGANNNNNNTGC	2 cut(s)	349, 383
BcnI	CCSGG	1 cut(s)	544
BcoDI	GTCTC	3 cut(s)	50, 167, 239
BfaI	CTAG	1 cut(s)	264
BfmI	CTRYAG	1 cut(s)	425
BfoI	RGCGCY	1 cut(s)	303
BglI	GCCNNNNNGGC	1 cut(s)	420
BisI	GCNGC	3 cut(s)	159, 268, 524
BlsI	GCNGC	3 cut(s)	160, 269, 525
Bme1390I	CCNGG	1 cut(s)	544
Bme18I	GGWCC	2 cut(s)	103, 492
BmeT110I	CYCGRG	3 cut(s)	22, 170, 528
BmgT120I	GGNCC	2 cut(s)	103, 492
BmiI	GGNNCC	3 cut(s)	104, 301, 535
BmrFI	CCNGG	1 cut(s)	544
BmsI	GCATC	1 cut(s)	69
BpiI	GAAGAC	2 cut(s)	188, 322
BplI	GAGNNNNNCTC	2 cut(s)	80, 112
BpuEI	CTTGAG	1 cut(s)	239
BpuMI	CCSGG	1 cut(s)	544
BsaHI	GRCGYC	1 cut(s)	300
BsaI	GGTCTC	2 cut(s)	167, 239
BsaJI	CCNNGG	2 cut(s)	441, 529
Bsc4I	CCNNNNNNNGG	4 cut(s)	99, 430, 530, 543
Bse1I	ACTGG	1 cut(s)	537
BseDI	CCNNGG	2 cut(s)	441, 529
BseLI	CCNNNNNNNGG	4 cut(s)	99, 430, 530, 543
BseNI	ACTGG	1 cut(s)	537
BsgI	GTGCAG	1 cut(s)	55
Bsh1236I	CGCG	3 cut(s)	240, 270, 371
Bsh1285I	CGRYCG	2 cut(s)	238, 369
BshFI	GGCC	4 cut(s)	92, 158, 336, 423
BshNI	GGYRCC	2 cut(s)	299, 533
BsiEI	CGRYCG	2 cut(s)	238, 369
BsiHKAI	GWGCWC	1 cut(s)	479
BsiHKCI	CYCGRG	3 cut(s)	22, 170, 528
BsiSI	CCGG	2 cut(s)	297, 543
BslFI	GGGAC	2 cut(s)	118, 446
BslI	CCNNNNNNNGG	4 cut(s)	99, 430, 530, 543
BsmAI	GTCTC	3 cut(s)	50, 167, 239
BsmFI	GGGAC	2 cut(s)	118, 446
BsnI	GGCC	4 cut(s)	92, 158, 336, 423
Bso31I	GGTCTC	2 cut(s)	167, 239
BsoBI	CYCGRG	3 cut(s)	22, 170, 528
Bsp1286I	GDGCHC	1 cut(s)	479
Bsp143I	GATC	3 cut(s)	140, 231, 436
Bsp68I	TCGCGA	1 cut(s)	371
BspACI	CCGC	7 cut(s)	75, 159, 198, 238, 268, 365, 524
BspANI	GGCC	4 cut(s)	92, 158, 336, 423
BspFNI	CGCG	3 cut(s)	240, 270, 371
BspLI	GGNNCC	3 cut(s)	104, 301, 535
BspMAI	CTGCAG	1 cut(s)	429
BspPI	GGATC	2 cut(s)	135, 431
BspQI	GCTCTTC	1 cut(s)	356
BspT107I	GGYRCC	2 cut(s)	299, 533
BspTNI	GGTCTC	2 cut(s)	167, 239
BsrI	ACTGG	1 cut(s)	537
BssECI	CCNNGG	2 cut(s)	441, 529
BssMI	GATC	3 cut(s)	140, 231, 436
BssNI	GRCGYC	1 cut(s)	300
Bst4CI	ACNGT	2 cut(s)	44, 52
Bst6I	CTCTTC	3 cut(s)	287, 326, 356
BstACI	GRCGYC	1 cut(s)	300
BstC8I	GCNNGC	1 cut(s)	425
BstDSI	CCRYGG	1 cut(s)	441
BstFNI	CGCG	3 cut(s)	240, 270, 371
BstH2I	RGCGCY	1 cut(s)	303
BstHHI	GCGC	1 cut(s)	302
BstKTI	GATC	3 cut(s)	143, 234, 439
BstMAI	GTCTC	3 cut(s)	50, 167, 239
BstMBI	GATC	3 cut(s)	140, 231, 436
BstMCI	CGRYCG	2 cut(s)	238, 369
BstMWI	GCNNNNNNNGC	2 cut(s)	308, 420
BstSCI	CCNGG	1 cut(s)	542
BstSFI	CTRYAG	1 cut(s)	425
BstUI	CGCG	3 cut(s)	240, 270, 371
BstV2I	GAAGAC	2 cut(s)	188, 322
BsuRI	GGCC	4 cut(s)	92, 158, 336, 423
BtgI	CCRYGG	1 cut(s)	441
BtsIMutI	CAGTG	1 cut(s)	544
BtuMI	TCGCGA	1 cut(s)	371
Cac8I	GCNNGC	1 cut(s)	425
CfoI	GCGC	1 cut(s)	302
Cfr13I	GGNCC	2 cut(s)	103, 492
CseI	GACGC	1 cut(s)	229
Csp6I	GTAC	1 cut(s)	466
CviAII	CATG	3 cut(s)	99, 178, 556
CviQI	GTAC	1 cut(s)	466
DinI	GGCGCC	1 cut(s)	301
DpnI	GATC	3 cut(s)	142, 233, 438
DpnII	GATC	3 cut(s)	140, 231, 436
Eam1104I	CTCTTC	3 cut(s)	287, 326, 356
EarI	CTCTTC	3 cut(s)	287, 326, 356
Eco147I	AGGCCT	1 cut(s)	423
Eco31I	GGTCTC	2 cut(s)	167, 239
Eco47I	GGWCC	2 cut(s)	103, 492
Eco88I	CYCGRG	3 cut(s)	22, 170, 528
EcoO109I	RGGNCCY	1 cut(s)	103
EgeI	GGCGCC	1 cut(s)	301
EheI	GGCGCC	1 cut(s)	301
FaeI	CATG	3 cut(s)	102, 181, 559
FaiI	YATR	3 cut(s)	100, 179, 557
FaqI	GGGAC	2 cut(s)	118, 446
FatI	CATG	3 cut(s)	98, 177, 555
Fnu4HI	GCNGC	3 cut(s)	159, 268, 524
Fsp4HI	GCNGC	3 cut(s)	159, 268, 524
FspBI	CTAG	1 cut(s)	264
GlaI	GCGC	1 cut(s)	301
GluI	GCNGC	3 cut(s)	159, 268, 524
HaeII	RGCGCY	1 cut(s)	303
HaeIII	GGCC	4 cut(s)	92, 158, 336, 423
HapII	CCGG	2 cut(s)	297, 543
HgaI	GACGC	1 cut(s)	229
HhaI	GCGC	1 cut(s)	302
Hin1I	GRCGYC	1 cut(s)	300
Hin1II	CATG	3 cut(s)	102, 181, 559
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HinfI	GANTC	2 cut(s)	188, 260
HpaII	CCGG	2 cut(s)	297, 543
HphI	GGTGA	1 cut(s)	412
Hpy188I	TCNGA	3 cut(s)	40, 140, 492
Hpy188III	TCNNGA	4 cut(s)	22, 172, 244, 370
Hpy99I	CGWCG	6 cut(s)	59, 245, 308, 311, 317, 329
HpyAV	CCTTC	2 cut(s)	347, 400
HpyCH4III	ACNGT	2 cut(s)	44, 52
HpyCH4V	TGCA	3 cut(s)	72, 427, 502
HpyF10VI	GCNNNNNNNGC	2 cut(s)	308, 420
Hsp92I	GRCGYC	1 cut(s)	300
Hsp92II	CATG	3 cut(s)	102, 181, 559
HspAI	GCGC	1 cut(s)	300
KasI	GGCGCC	1 cut(s)	299
Kzo9I	GATC	3 cut(s)	140, 231, 436
LguI	GCTCTTC	1 cut(s)	356
LmnI	GCTCC	1 cut(s)	482
LpnPI	CCDG	6 cut(s)	262, 310, 413, 437, 550, 556
LweI	GCATC	1 cut(s)	69
MaeI	CTAG	1 cut(s)	264
MalI	GATC	3 cut(s)	142, 233, 438
MboI	GATC	3 cut(s)	140, 231, 436
MboII	GAAGA	7 cut(s)	193, 241, 274, 313, 322, 343, 418
MfeI	CAATTG	1 cut(s)	574
MhlI	GDGCHC	1 cut(s)	479
MluCI	AATT	4 cut(s)	204, 374, 496, 574
Mly113I	GGCGCC	1 cut(s)	300
MlyI	GAGTC	1 cut(s)	269
MseI	TTAA	1 cut(s)	384
MspI	CCGG	2 cut(s)	297, 543
MspR9I	CCNGG	1 cut(s)	544
MunI	CAATTG	1 cut(s)	574
MvnI	CGCG	3 cut(s)	240, 270, 371
MwoI	GCNNNNNNNGC	2 cut(s)	308, 420
NarI	GGCGCC	1 cut(s)	300
NciI	CCSGG	1 cut(s)	544
NdeII	GATC	3 cut(s)	140, 231, 436
NlaIII	CATG	3 cut(s)	102, 181, 559
NlaIV	GGNNCC	3 cut(s)	104, 301, 535
NruI	TCGCGA	1 cut(s)	371
PaeR7I	CTCGAG	2 cut(s)	22, 170
PceI	AGGCCT	1 cut(s)	423
PciSI	GCTCTTC	1 cut(s)	356
PcsI	WCGNNNNNNNCGW	4 cut(s)	240, 312, 321, 449
PfeI	GAWTC	1 cut(s)	188
PflFI	GACNNNGTC	1 cut(s)	239
PflMI	CCANNNNNTGG	1 cut(s)	99
PkrI	GCNGC	3 cut(s)	160, 269, 525
PleI	GAGTC	1 cut(s)	268
PluTI	GGCGCC	1 cut(s)	303
PpsI	GAGTC	1 cut(s)	268
PpuMI	RGGWCCY	1 cut(s)	103
Psp5II	RGGWCCY	1 cut(s)	103
PspN4I	GGNNCC	3 cut(s)	104, 301, 535
PspPI	GGNCC	2 cut(s)	103, 492
PspPPI	RGGWCCY	1 cut(s)	103
PstI	CTGCAG	1 cut(s)	429
PsyI	GACNNNGTC	1 cut(s)	239
RruI	TCGCGA	1 cut(s)	371
RsaI	GTAC	1 cut(s)	467
RsaNI	GTAC	1 cut(s)	466
SapI	GCTCTTC	1 cut(s)	356
SaqAI	TTAA	1 cut(s)	384
SatI	GCNGC	3 cut(s)	159, 268, 524
Sau3AI	GATC	3 cut(s)	140, 231, 436
Sau96I	GGNCC	2 cut(s)	103, 492
SbfI	CCTGCAGG	1 cut(s)	429
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	1 cut(s)	544
SdaI	CCTGCAGG	1 cut(s)	429
SduI	GDGCHC	1 cut(s)	479
SetI	ASST	5 cut(s)	29, 171, 276, 382, 535
SfaNI	GCATC	1 cut(s)	69
SfcI	CTRYAG	1 cut(s)	425
SfoI	GGCGCC	1 cut(s)	301
Sfr274I	CTCGAG	2 cut(s)	22, 170
SinI	GGWCC	2 cut(s)	103, 492
SlaI	CTCGAG	2 cut(s)	22, 170
SmlI	CTYRAG	3 cut(s)	22, 170, 254
SmoI	CTYRAG	3 cut(s)	22, 170, 254
Sse8387I	CCTGCAGG	1 cut(s)	429
Sse9I	AATT	4 cut(s)	204, 374, 496, 574
SseBI	AGGCCT	1 cut(s)	423
SsiI	CCGC	7 cut(s)	75, 159, 198, 238, 268, 365, 524
SspDI	GGCGCC	1 cut(s)	299
SspMI	CTAG	1 cut(s)	264
StuI	AGGCCT	1 cut(s)	423
StyD4I	CCNGG	1 cut(s)	542
TaaI	ACNGT	2 cut(s)	44, 52
TaqI	TCGA	7 cut(s)	23, 150, 171, 234, 243, 354, 452
TaqII	GACCGA	1 cut(s)	200
TasI	AATT	4 cut(s)	204, 374, 496, 574
TatI	WGTACW	1 cut(s)	465
TauI	GCSGC	3 cut(s)	161, 270, 526
TfiI	GAWTC	1 cut(s)	188
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TscAI	CASTG	1 cut(s)	544
TspDTI	ATGAA	2 cut(s)	194, 419
TspGWI	ACGGA	1 cut(s)	458
TspRI	CASTG	1 cut(s)	544
Tth111I	GACNNNGTC	1 cut(s)	239
Van91I	CCANNNNNTGG	1 cut(s)	99
VpaK11BI	GGWCC	2 cut(s)	103, 492
XhoI	CTCGAG	2 cut(s)	22, 170
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.