AT3G12180

cornichon

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012351
Physical Location & Seq
Forward (+)
3883330 .. 3884864
1535 bp
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UTR
Exon/CDS
Intron
AT3G12180.1

Sequence Viewer

Length: 441 bp
ATGGCTTGGGATTTGTTTTTATGGATAGTCTCCTTCTTCGTTAGCTTGGCTCTCGTCGCTTCCGTCTTCTACCAGGTTATCTGCTTAACGGATTTAGAAGCTGATTACTTGAACCCTTTTGAAACAAGTACCCGTATCAACCGATTAGTAATACCTGAGTTTATCCTCCAAGGGTCACTCTGCCTTCTCTTCCTCCTCACATGGCATTGGGTCTTCTTTCTGGTCGCCGTCCCTGTAACAGTCTATCACGCAATGTTATACAAAGAGCGACGTTATCTCATCGATGTCACTGAAGTGTTCCGTGGTATCAGCTTTGAAAAGAAGCTCCGGTATACCAAGCTCGGGTTCTACGTCTTTCTCTTCATCATGGTTGTCTTTAGGCTCACTCTCTCTGCGGTCTATAGCTTCACGGAAGATGATGATCTACTTCATTTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cornichon

Protein Analysis

146

Amino Acids

17.37

Weight (kDa)

5.51

Isoelectric Point (pI)

29.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cornichon PF03311 6 - 126 1.3e-40 Cornichon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012351)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12180
fragaria_vesca FvH4_6g22920
malus_domestica MD12G1063300.v1.1 MD14G1064100.v1.1
prunus_persica Prupe.7G070300_v2.0.a1
pyrus_communis pycom12g05570 pycom14g05160
rosa_chinensis RchiOBHm_Chr3g0480731
rosa_laevigata RLG00000023459
rosa_multiflora Rmu_sc0001135.1_g000001 Rmu_sc0003902.1_g000023
rosa_roxburghii Rroxscaffold_6G00401120
rosa_rugosa Rorug03G0185200 Rorug03G0185300
rosa_samantha Rh3AG237300 Rh3BG270500 Rh3CG266700 Rh3DG262800
rosa_wichuraiana Rw3G021250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 332
AciI CCGC 1 cut(s) 395
AcuI CTGAAG 1 cut(s) 312
AfaI GTAC 1 cut(s) 130
AfiI CCNNNNNNNGG 1 cut(s) 342
AgsI TTSAA 3 cut(s) 112, 122, 317
AjnI CCWGG 1 cut(s) 72
AjuI GAANNNNNNNTTGG 2 cut(s) 329, 361
AleI CACNNNNGTG 1 cut(s) 293
AluBI AGCT 6 cut(s) 45, 101, 312, 325, 340, 405
AluI AGCT 6 cut(s) 45, 101, 312, 325, 340, 405
Alw26I GTCTC 1 cut(s) 34
Ama87I CYCGRG 1 cut(s) 341
AvaI CYCGRG 1 cut(s) 341
BbsI GAAGAC 2 cut(s) 58, 205
BceAI ACGGC 1 cut(s) 212
BciT130I CCWGG 1 cut(s) 74
BcoDI GTCTC 1 cut(s) 34
BfmI CTRYAG 1 cut(s) 400
Bme1390I CCNGG 1 cut(s) 74
BmeT110I CYCGRG 1 cut(s) 341
BmrFI CCNGG 1 cut(s) 74
BpiI GAAGAC 2 cut(s) 58, 205
Bsa29I ATCGAT 1 cut(s) 282
BsaBI GATNNNNATC 1 cut(s) 420
BsaJI CCNNGG 2 cut(s) 169, 301
BsaWI WCCGGW 1 cut(s) 327
Bsc4I CCNNNNNNNGG 1 cut(s) 342
Bse3DI GCAATG 1 cut(s) 258
Bse8I GATNNNNATC 1 cut(s) 420
BseBI CCWGG 1 cut(s) 74
BseCI ATCGAT 1 cut(s) 282
BseDI CCNNGG 2 cut(s) 169, 301
BseJI GATNNNNATC 1 cut(s) 420
BseLI CCNNNNNNNGG 1 cut(s) 342
BseMI GCAATG 1 cut(s) 258
BseMII CTCAG 1 cut(s) 147
BseRI GAGGAG 1 cut(s) 185
BshVI ATCGAT 1 cut(s) 282
BsiHKCI CYCGRG 1 cut(s) 341
BsiSI CCGG 1 cut(s) 328
BslFI GGGAC 1 cut(s) 215
BslI CCNNNNNNNGG 1 cut(s) 342
BsmAI GTCTC 1 cut(s) 34
BsmFI GGGAC 1 cut(s) 215
BsoBI CYCGRG 1 cut(s) 341
Bsp143I GATC 1 cut(s) 421
BspACI CCGC 1 cut(s) 395
BspCNI CTCAG 1 cut(s) 148
BspDI ATCGAT 1 cut(s) 282
BsrDI GCAATG 1 cut(s) 258
BssECI CCNNGG 2 cut(s) 169, 301
BssMI GATC 1 cut(s) 421
BssNAI GTATAC 1 cut(s) 333
BssT1I CCWWGG 1 cut(s) 169
Bst1107I GTATAC 1 cut(s) 333
Bst2UI CCWGG 1 cut(s) 74
Bst4CI ACNGT 1 cut(s) 241
Bst6I CTCTTC 2 cut(s) 194, 365
BstDEI CTNAG 1 cut(s) 156
BstDSI CCRYGG 1 cut(s) 301
BstKTI GATC 1 cut(s) 424
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 1 cut(s) 421
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstNI CCWGG 1 cut(s) 74
BstSCI CCNGG 1 cut(s) 72
BstSFI CTRYAG 1 cut(s) 400
BstV2I GAAGAC 2 cut(s) 58, 205
BstZ17I GTATAC 1 cut(s) 333
Bsu15I ATCGAT 1 cut(s) 282
BsuTUI ATCGAT 1 cut(s) 282
BtgI CCRYGG 1 cut(s) 301
BtsIMutI CAGTG 1 cut(s) 288
ClaI ATCGAT 1 cut(s) 282
CsiI ACCWGGT 1 cut(s) 72
Csp6I GTAC 1 cut(s) 129
CviAII CATG 2 cut(s) 201, 367
CviJI RGCY 9 cut(s) 5, 45, 50, 101, 312, 325, 340, 382, 405
CviKI_1 RGCY 9 cut(s) 5, 45, 50, 101, 312, 325, 340, 382, 405
CviQI GTAC 1 cut(s) 129
DdeI CTNAG 1 cut(s) 156
DpnI GATC 1 cut(s) 423
DpnII GATC 1 cut(s) 421
Eam1104I CTCTTC 2 cut(s) 194, 365
EarI CTCTTC 2 cut(s) 194, 365
Eco130I CCWWGG 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 312
Eco88I CYCGRG 1 cut(s) 341
EcoRII CCWGG 1 cut(s) 72
EcoT14I CCWWGG 1 cut(s) 169
ErhI CCWWGG 1 cut(s) 169
FaeI CATG 2 cut(s) 204, 370
FaiI YATR 6 cut(s) 22, 202, 259, 333, 368, 402
FaqI GGGAC 1 cut(s) 215
FatI CATG 2 cut(s) 200, 366
FblI GTMKAC 1 cut(s) 332
HapII CCGG 1 cut(s) 328
Hin1II CATG 2 cut(s) 204, 370
HpaII CCGG 1 cut(s) 328
Hpy166II GTNNAC 1 cut(s) 333
Hpy8I GTNNAC 1 cut(s) 333
Hpy99I CGWCG 2 cut(s) 59, 273
HpyAV CCTTC 2 cut(s) 43, 194
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4IV ACGT 2 cut(s) 271, 351
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 1 cut(s) 156
HpySE526I ACGT 2 cut(s) 271, 351
Hsp92II CATG 2 cut(s) 204, 370
Kzo9I GATC 1 cut(s) 421
LmnI GCTCC 1 cut(s) 330
LpnPI CCDG 6 cut(s) 59, 86, 168, 206, 246, 341
MabI ACCWGGT 1 cut(s) 72
MaeII ACGT 2 cut(s) 271, 351
MaeIII GTNAC 3 cut(s) 174, 235, 286
MalI GATC 1 cut(s) 423
MboI GATC 1 cut(s) 421
MboII GAAGA 6 cut(s) 28, 58, 181, 205, 352, 425
MnlI CCTC 3 cut(s) 176, 203, 206
MseI TTAA 1 cut(s) 86
MslI CAYNNNNRTG 1 cut(s) 293
MspI CCGG 1 cut(s) 328
MspR9I CCNGG 1 cut(s) 74
MvaI CCWGG 1 cut(s) 74
MwoI GCNNNNNNNGC 1 cut(s) 56
NdeII GATC 1 cut(s) 421
NlaIII CATG 2 cut(s) 204, 370
NmuCI GTSAC 2 cut(s) 174, 286
OliI CACNNNNGTG 1 cut(s) 293
PcsI WCGNNNNNNNCGW 2 cut(s) 60, 348
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
RsaI GTAC 1 cut(s) 130
RsaNI GTAC 1 cut(s) 129
RseI CAYNNNNRTG 1 cut(s) 293
SaqAI TTAA 1 cut(s) 86
Sau3AI GATC 1 cut(s) 421
ScrFI CCNGG 1 cut(s) 74
SexAI ACCWGGT 1 cut(s) 72
SfcI CTRYAG 1 cut(s) 400
SmiMI CAYNNNNRTG 1 cut(s) 293
SsiI CCGC 1 cut(s) 395
StyD4I CCNGG 1 cut(s) 72
StyI CCWWGG 1 cut(s) 169
TaaI ACNGT 1 cut(s) 241
TaiI ACGT 2 cut(s) 274, 354
TaqI TCGA 1 cut(s) 282
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TscAI CASTG 1 cut(s) 295
TseFI GTSAC 2 cut(s) 174, 286
Tsp45I GTSAC 2 cut(s) 174, 286
TspDTI ATGAA 2 cut(s) 352, 419
TspGWI ACGGA 4 cut(s) 52, 104, 290, 425
TspRI CASTG 1 cut(s) 295
XmiI GTMKAC 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.