Prupe.7G070300_v2.0.a1

Protein cornichon homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0012351
Physical Location & Seq
Reverse (-)
10827026 .. 10829434
2409 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G070300.1

Sequence Viewer

Length: 459 bp
ATGGCTTGGGATTTGATCTATTGGCTTATCTGCTTCTGCATCGACCTTGCCCTCTTCGCCTCAAGCCTTTACCAGTACGTGATGCTAACGGATTTGGAGGCTGACTATATCAACCCTTACGAATTATCATCTCGCATCAATCAATTGGTTGTCCCTGAGTTTGTAGTGCATATAGTCTTCTGTGCGCTTTTCCTCGTGACACAGCATTGGTTCATGTTCCTGATTACAGTCCCCATTACTTGCTATATTGTGATGTTGTTTGTAAAACAGCAGCATCTTATTGATGTCACTGAAGTCTTCAGGGTTCTTAATACTGAGAAGAAGTGCCGGCTTGTCAAACTTGGTTTTTACTTTTCTCTCCTCGCTATCATCATTGTCAGACTGGCCATCTCTGGAATATTATTTCCGAGGTCCGGATCTGAAGAATTTGACCTTCGTGCCTCTTTTCTAGAATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cornichon

Protein Analysis

153

Amino Acids

17.84

Weight (kDa)

5.25

Isoelectric Point (pI)

31.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012351)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12180
fragaria_vesca FvH4_6g22920
malus_domestica MD12G1063300.v1.1 MD14G1064100.v1.1
prunus_persica Prupe.7G070300_v2.0.a1
pyrus_communis pycom12g05570 pycom14g05160
rosa_chinensis RchiOBHm_Chr3g0480731
rosa_laevigata RLG00000023459
rosa_multiflora Rmu_sc0001135.1_g000001 Rmu_sc0003902.1_g000023
rosa_roxburghii Rroxscaffold_6G00401120
rosa_rugosa Rorug03G0185200 Rorug03G0185300
rosa_samantha Rh3AG237300 Rh3BG270500 Rh3CG266700 Rh3DG262800
rosa_wichuraiana Rw3G021250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 413
AclWI GGATC 1 cut(s) 424
AcoI YGGCCR 1 cut(s) 384
AcsI RAATTY 2 cut(s) 425, 452
AcuI CTGAAG 3 cut(s) 283, 312, 441
AfaI GTAC 1 cut(s) 77
AfiI CCNNNNNNNGG 1 cut(s) 413
AlwI GGATC 1 cut(s) 424
Aor13HI TCCGGA 1 cut(s) 413
AoxI GGCC 1 cut(s) 384
ApeKI GCWGC 1 cut(s) 271
ApoI RAATTY 2 cut(s) 425, 452
AspLEI GCGC 1 cut(s) 187
AspS9I GGNCC 1 cut(s) 411
AvaII GGWCC 1 cut(s) 411
BalI TGGCCA 1 cut(s) 386
BauI CACGAG 1 cut(s) 194
BbsI GAAGAC 2 cut(s) 169, 289
BbvI GCAGC 1 cut(s) 283
BccI CCATC 1 cut(s) 395
BfaI CTAG 2 cut(s) 449, 457
BisI GCNGC 1 cut(s) 272
BlsI GCNGC 1 cut(s) 273
Bme18I GGWCC 1 cut(s) 411
BmgT120I GGNCC 1 cut(s) 411
BmsI GCATC 4 cut(s) 48, 72, 144, 283
BpiI GAAGAC 2 cut(s) 169, 289
BpuEI CTTGAG 1 cut(s) 46
BsaAI YACGTR 1 cut(s) 79
BsaJI CCNNGG 1 cut(s) 407
BsaWI WCCGGW 1 cut(s) 413
Bsc4I CCNNNNNNNGG 1 cut(s) 413
Bse118I RCCGGY 1 cut(s) 327
Bse1I ACTGG 2 cut(s) 73, 387
BseAI TCCGGA 1 cut(s) 413
BseDI CCNNGG 1 cut(s) 407
BseLI CCNNNNNNNGG 1 cut(s) 413
BseMII CTCAG 2 cut(s) 147, 306
BseNI ACTGG 2 cut(s) 73, 387
BseRI GAGGAG 1 cut(s) 350
BseXI GCAGC 1 cut(s) 283
BshFI GGCC 1 cut(s) 386
BsiSI CCGG 2 cut(s) 328, 414
BslFI GGGAC 2 cut(s) 137, 215
BslI CCNNNNNNNGG 1 cut(s) 413
BsmFI GGGAC 2 cut(s) 137, 215
BsnI GGCC 1 cut(s) 386
Bsp13I TCCGGA 1 cut(s) 413
Bsp143I GATC 2 cut(s) 15, 416
BspANI GGCC 1 cut(s) 386
BspCNI CTCAG 2 cut(s) 148, 307
BspEI TCCGGA 1 cut(s) 413
BspPI GGATC 1 cut(s) 424
BsrFI RCCGGY 1 cut(s) 327
BsrI ACTGG 2 cut(s) 73, 387
BssAI RCCGGY 1 cut(s) 327
BssECI CCNNGG 1 cut(s) 407
BssMI GATC 2 cut(s) 15, 416
BssSI CACGAG 1 cut(s) 194
Bst2BI CACGAG 1 cut(s) 194
Bst4CI ACNGT 1 cut(s) 229
Bst6I CTCTTC 1 cut(s) 59
BstBAI YACGTR 1 cut(s) 79
BstC8I GCNNGC 1 cut(s) 329
BstDEI CTNAG 2 cut(s) 156, 315
BstHHI GCGC 1 cut(s) 187
BstKTI GATC 2 cut(s) 18, 419
BstMBI GATC 2 cut(s) 15, 416
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstV1I GCAGC 1 cut(s) 283
BstV2I GAAGAC 2 cut(s) 169, 289
BstX2I RGATCY 1 cut(s) 416
BstYI RGATCY 1 cut(s) 416
BsuRI GGCC 1 cut(s) 386
BtsIMutI CAGTG 1 cut(s) 288
Cac8I GCNNGC 1 cut(s) 329
CfoI GCGC 1 cut(s) 187
Cfr10I RCCGGY 1 cut(s) 327
Cfr13I GGNCC 1 cut(s) 411
Csp6I GTAC 1 cut(s) 76
CviAII CATG 1 cut(s) 214
CviJI RGCY 6 cut(s) 5, 25, 66, 101, 331, 386
CviKI_1 RGCY 6 cut(s) 5, 25, 66, 101, 331, 386
CviQI GTAC 1 cut(s) 76
DdeI CTNAG 2 cut(s) 156, 315
DpnI GATC 2 cut(s) 17, 418
DpnII GATC 2 cut(s) 15, 416
EaeI YGGCCR 1 cut(s) 384
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
Eco47I GGWCC 1 cut(s) 411
Eco57I CTGAAG 3 cut(s) 283, 312, 441
EcoRI GAATTC 1 cut(s) 452
FaeI CATG 1 cut(s) 217
FaiI YATR 5 cut(s) 108, 171, 173, 215, 246
FaqI GGGAC 2 cut(s) 137, 215
FatI CATG 1 cut(s) 213
Fnu4HI GCNGC 1 cut(s) 272
Fsp4HI GCNGC 1 cut(s) 272
FspBI CTAG 2 cut(s) 449, 457
GlaI GCGC 1 cut(s) 186
GluI GCNGC 1 cut(s) 272
HaeIII GGCC 1 cut(s) 386
HapII CCGG 2 cut(s) 328, 414
HhaI GCGC 1 cut(s) 187
Hin1II CATG 1 cut(s) 217
Hin6I GCGC 1 cut(s) 185
HinP1I GCGC 1 cut(s) 185
HpaII CCGG 2 cut(s) 328, 414
Hpy188I TCNGA 3 cut(s) 380, 408, 421
Hpy188III TCNNGA 5 cut(s) 196, 220, 393, 414, 449
HpyAV CCTTC 1 cut(s) 443
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 2 cut(s) 39, 169
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 2 cut(s) 156, 315
HpySE526I ACGT 1 cut(s) 78
Hsp92II CATG 1 cut(s) 217
HspAI GCGC 1 cut(s) 185
Kpn2I TCCGGA 1 cut(s) 413
KroI GCCGGC 1 cut(s) 327
KroNI GCCGGC 1 cut(s) 329
Kzo9I GATC 2 cut(s) 15, 416
LpnPI CCDG 8 cut(s) 86, 168, 233, 286, 341, 368, 378, 427
Lsp1109I GCAGC 1 cut(s) 283
LweI GCATC 4 cut(s) 48, 72, 144, 283
MaeI CTAG 2 cut(s) 449, 457
MaeII ACGT 1 cut(s) 78
MaeIII GTNAC 2 cut(s) 196, 286
MalI GATC 2 cut(s) 17, 418
MboI GATC 2 cut(s) 15, 416
MboII GAAGA 5 cut(s) 46, 169, 289, 331, 434
MfeI CAATTG 1 cut(s) 143
MflI RGATCY 1 cut(s) 416
MlsI TGGCCA 1 cut(s) 386
MluCI AATT 4 cut(s) 122, 143, 425, 452
MluNI TGGCCA 1 cut(s) 386
MnlI CCTC 7 cut(s) 62, 70, 91, 203, 371, 402, 451
Mox20I TGGCCA 1 cut(s) 386
MroI TCCGGA 1 cut(s) 413
MroNI GCCGGC 1 cut(s) 327
MscI TGGCCA 1 cut(s) 386
MseI TTAA 1 cut(s) 309
Msp20I TGGCCA 1 cut(s) 386
MspI CCGG 2 cut(s) 328, 414
MunI CAATTG 1 cut(s) 143
MwoI GCNNNNNNNGC 1 cut(s) 56
NaeI GCCGGC 1 cut(s) 329
NdeII GATC 2 cut(s) 15, 416
NgoMIV GCCGGC 1 cut(s) 327
NlaIII CATG 1 cut(s) 217
NmuCI GTSAC 2 cut(s) 196, 286
PdiI GCCGGC 1 cut(s) 329
PkrI GCNGC 1 cut(s) 273
Ppu21I YACGTR 1 cut(s) 79
PspPI GGNCC 1 cut(s) 411
PsuI RGATCY 1 cut(s) 416
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 1 cut(s) 272
Sau3AI GATC 2 cut(s) 15, 416
Sau96I GGNCC 1 cut(s) 411
SetI ASST 4 cut(s) 48, 81, 413, 435
SfaNI GCATC 4 cut(s) 48, 72, 144, 283
SinI GGWCC 1 cut(s) 411
SmlI CTYRAG 1 cut(s) 61
SmoI CTYRAG 1 cut(s) 61
Sse9I AATT 4 cut(s) 122, 143, 425, 452
SspI AATATT 1 cut(s) 399
SspMI CTAG 2 cut(s) 449, 457
TaaI ACNGT 1 cut(s) 229
TaiI ACGT 1 cut(s) 81
TaqI TCGA 1 cut(s) 42
TasI AATT 4 cut(s) 122, 143, 425, 452
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TscAI CASTG 1 cut(s) 295
TseFI GTSAC 2 cut(s) 196, 286
TseI GCWGC 1 cut(s) 271
Tsp45I GTSAC 2 cut(s) 196, 286
TspDTI ATGAA 1 cut(s) 202
TspGWI ACGGA 1 cut(s) 104
TspRI CASTG 1 cut(s) 295
VpaK11BI GGWCC 1 cut(s) 411
XapI RAATTY 2 cut(s) 425, 452
XbaI TCTAGA 1 cut(s) 448
XspI CTAG 2 cut(s) 449, 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.