MD12G1063300.v1.1

Protein cornichon homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0012351
Physical Location & Seq
Forward (+)
7400138 .. 7403740
3603 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1063300.v1.1.491

Sequence Viewer

Length: 519 bp
ATGTTTTTGGCTAAAAAGCCTACACACTCACAGAGCTTCAGAGCGGACCTCTGTGCAAGAAAGCAGGCAAACGAGCAAGCAGGCATGGCTTGGGAATTGATCTATTGGCTAATCTGCTTCTGCGTCGACCTTGCCCTCTTCGCCTCCAGCCTTTACCAGTATGTGATGTTAACAGACTTGGAGGCTGACTATCTCAACCCGTACGAACTATCAAATCGCATCAATCAATTGGTTGTCCCTGAGTTCATAGTGCACATTGTGTTCTGTTCTTTTTTCCTCTTGGCTCAACGTTGGTTCATGTTCCTTATTACAGTCCCTCTTACTTGCTATATTGCGATGTTGTTTGTAAAACAGCAGCATCTTATTGATGTGACTGAAGTGTTCAGGGTTCTTAATACTGAGAAGAAATGCAGGCTTGTCAAACTTGGTTTCTACTTTTCCCTCCTTGCTGTAATCATCATCAGTCCGAGCACTCACTTCTCAACGGCTTACCTTAGCTGCTTTCAACTCTTTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cornichon

Protein Analysis

173

Amino Acids

20.12

Weight (kDa)

6.87

Isoelectric Point (pI)

32.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cornichon PF03311 34 - 152 4.9e-36 Cornichon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012351)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12180
fragaria_vesca FvH4_6g22920
malus_domestica MD12G1063300.v1.1 MD14G1064100.v1.1
prunus_persica Prupe.7G070300_v2.0.a1
pyrus_communis pycom12g05570 pycom14g05160
rosa_chinensis RchiOBHm_Chr3g0480731
rosa_laevigata RLG00000023459
rosa_multiflora Rmu_sc0001135.1_g000001 Rmu_sc0003902.1_g000023
rosa_roxburghii Rroxscaffold_6G00401120
rosa_rugosa Rorug03G0185200 Rorug03G0185300
rosa_samantha Rh3AG237300 Rh3BG270500 Rh3CG266700 Rh3DG262800
rosa_wichuraiana Rw3G021250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 44
AccI GTMKAC 1 cut(s) 126
AciI CCGC 1 cut(s) 44
AclI AACGTT 1 cut(s) 289
AcuI CTGAAG 2 cut(s) 22, 396
AdeI CACNNNGTG 1 cut(s) 259
AfaI GTAC 1 cut(s) 203
AgsI TTSAA 1 cut(s) 506
AluBI AGCT 2 cut(s) 36, 498
AluI AGCT 2 cut(s) 36, 498
Alw21I GWGCWC 2 cut(s) 255, 473
Alw44I GTGCAC 1 cut(s) 251
ApaLI GTGCAC 1 cut(s) 251
ApeKI GCWGC 2 cut(s) 355, 498
AspS9I GGNCC 1 cut(s) 46
AvaII GGWCC 1 cut(s) 46
BaeGI GKGCMC 1 cut(s) 255
Bbv12I GWGCWC 2 cut(s) 255, 473
BbvI GCAGC 2 cut(s) 367, 485
BceAI ACGGC 1 cut(s) 501
BfaI CTAG 1 cut(s) 517
BisI GCNGC 2 cut(s) 356, 499
BlsI GCNGC 2 cut(s) 357, 500
Bme18I GGWCC 1 cut(s) 46
BmgT120I GGNCC 1 cut(s) 46
BmsI GCATC 2 cut(s) 228, 367
BplI GAGNNNNNCTC 2 cut(s) 33, 65
BpmI CTGGAG 1 cut(s) 130
Bpu10I CCTNAGC 1 cut(s) 494
Bse1I ACTGG 1 cut(s) 157
BseMII CTCAG 2 cut(s) 231, 390
BseNI ACTGG 1 cut(s) 157
BseSI GKGCMC 1 cut(s) 255
BseXI GCAGC 2 cut(s) 367, 485
BsiHKAI GWGCWC 2 cut(s) 255, 473
BsiWI CGTACG 1 cut(s) 201
BslFI GGGAC 2 cut(s) 221, 299
BsmFI GGGAC 2 cut(s) 221, 299
Bsp1286I GDGCHC 2 cut(s) 255, 473
Bsp143I GATC 1 cut(s) 99
BspACI CCGC 1 cut(s) 44
BspCNI CTCAG 2 cut(s) 232, 391
BsrBI CCGCTC 1 cut(s) 44
BsrI ACTGG 1 cut(s) 157
BssMI GATC 1 cut(s) 99
Bst4CI ACNGT 1 cut(s) 313
Bst6I CTCTTC 1 cut(s) 143
BstC8I GCNNGC 4 cut(s) 66, 78, 82, 413
BstDEI CTNAG 3 cut(s) 240, 399, 494
BstKTI GATC 1 cut(s) 102
BstMBI GATC 1 cut(s) 99
BstMWI GCNNNNNNNGC 2 cut(s) 86, 140
BstSLI GKGCMC 1 cut(s) 255
BstV1I GCAGC 2 cut(s) 367, 485
BtgZI GCGATG 1 cut(s) 350
Cac8I GCNNGC 4 cut(s) 66, 78, 82, 413
Cfr13I GGNCC 1 cut(s) 46
CseI GACGC 1 cut(s) 112
Csp6I GTAC 1 cut(s) 202
CviAII CATG 2 cut(s) 85, 298
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 3 cut(s) 240, 399, 494
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
DraIII CACNNNGTG 1 cut(s) 259
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
Eco47I GGWCC 1 cut(s) 46
Eco57I CTGAAG 2 cut(s) 22, 396
FaeI CATG 2 cut(s) 88, 301
FaiI YATR 5 cut(s) 86, 162, 248, 299, 330
FaqI GGGAC 2 cut(s) 221, 299
FatI CATG 2 cut(s) 84, 297
FblI GTMKAC 1 cut(s) 126
Fnu4HI GCNGC 2 cut(s) 356, 499
Fsp4HI GCNGC 2 cut(s) 356, 499
FspBI CTAG 1 cut(s) 517
GluI GCNGC 2 cut(s) 356, 499
GsuI CTGGAG 1 cut(s) 130
HgaI GACGC 1 cut(s) 112
Hin1II CATG 2 cut(s) 88, 301
HincII GTYRAC 2 cut(s) 127, 171
HindII GTYRAC 2 cut(s) 127, 171
HpaI GTTAAC 1 cut(s) 171
Hpy166II GTNNAC 3 cut(s) 127, 171, 253
Hpy188I TCNGA 2 cut(s) 41, 468
Hpy8I GTNNAC 3 cut(s) 127, 171, 253
Hpy99I CGWCG 1 cut(s) 128
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4IV ACGT 1 cut(s) 289
HpyCH4V TGCA 3 cut(s) 56, 253, 411
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 140
HpyF3I CTNAG 3 cut(s) 240, 399, 494
HpySE526I ACGT 1 cut(s) 289
Hsp92II CATG 2 cut(s) 88, 301
KspAI GTTAAC 1 cut(s) 171
Kzo9I GATC 1 cut(s) 99
LpnPI CCDG 7 cut(s) 50, 66, 160, 170, 252, 370, 397
Lsp1109I GCAGC 2 cut(s) 367, 485
LweI GCATC 2 cut(s) 228, 367
MaeI CTAG 1 cut(s) 517
MaeII ACGT 1 cut(s) 289
MaeIII GTNAC 1 cut(s) 370
MalI GATC 1 cut(s) 101
MbiI CCGCTC 1 cut(s) 44
MboI GATC 1 cut(s) 99
MboII GAAGA 2 cut(s) 130, 415
MfeI CAATTG 1 cut(s) 227
MhlI GDGCHC 2 cut(s) 255, 473
MluCI AATT 2 cut(s) 95, 227
MnlI CCTC 7 cut(s) 59, 146, 154, 175, 287, 327, 452
MseI TTAA 2 cut(s) 170, 393
MunI CAATTG 1 cut(s) 227
MwoI GCNNNNNNNGC 2 cut(s) 86, 140
NdeII GATC 1 cut(s) 99
NlaIII CATG 2 cut(s) 88, 301
NmuCI GTSAC 1 cut(s) 370
Pfl23II CGTACG 1 cut(s) 201
PkrI GCNGC 2 cut(s) 357, 500
Psp1406I AACGTT 1 cut(s) 289
PspLI CGTACG 1 cut(s) 201
PspPI GGNCC 1 cut(s) 46
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
SalI GTCGAC 1 cut(s) 125
SaqAI TTAA 2 cut(s) 170, 393
SatI GCNGC 2 cut(s) 356, 499
Sau3AI GATC 1 cut(s) 99
Sau96I GGNCC 1 cut(s) 46
SduI GDGCHC 2 cut(s) 255, 473
SetI ASST 6 cut(s) 38, 51, 132, 292, 495, 500
SfaNI GCATC 2 cut(s) 228, 367
SinI GGWCC 1 cut(s) 46
Sse9I AATT 2 cut(s) 95, 227
SsiI CCGC 1 cut(s) 44
SspMI CTAG 1 cut(s) 517
TaaI ACNGT 1 cut(s) 313
TaiI ACGT 1 cut(s) 292
TaqI TCGA 1 cut(s) 126
TasI AATT 2 cut(s) 95, 227
Tru1I TTAA 2 cut(s) 170, 393
Tru9I TTAA 2 cut(s) 170, 393
TseFI GTSAC 1 cut(s) 370
TseI GCWGC 2 cut(s) 355, 498
Tsp45I GTSAC 1 cut(s) 370
TspDTI ATGAA 2 cut(s) 235, 286
VneI GTGCAC 1 cut(s) 251
VpaK11BI GGWCC 1 cut(s) 46
XmiI GTMKAC 1 cut(s) 126
XspI CTAG 1 cut(s) 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.