MD14G1064100.v1.1

Protein cornichon homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0012351
Physical Location & Seq
Forward (+)
6756710 .. 6759504
2795 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1064100.v1.1.491

Sequence Viewer

Length: 438 bp
ATGGCTTGGGAATTGATGTATTGGCTCATCTGCTTCTGCGTCGACCTTGCCCTCTTCGCCTCCAGCCTTTACCAGTATGTGATGTTAACAGACTTGGAGGCTGACTATATCAACCCGTACGAACTATCAAATCGCATCAATCAATTGGTTGTCCCTGAGTTCATATTGCACATTGTGTTCTGTGCATTTTTCCTCTTGGCTCGGCGTTGGTTCATGTTCCTCGTTACAGTCCCTCTTACTAGCTATATTGTCATGTTGTTTGTAAAACAGCAGCATCTTATTGATGTTACTGAAGTGTTCAGGGTTCTTAATACTGAGAAGAAGTGCAGGCTTGTCAAACTTGGCTTCTACTTTTGCCTTCTCGCTGTAATCATCATCAGGCTTACCTTAGCTGCTTTCAACTCTTTGACTAGTGAAGAACATGCTGTGATATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cornichon

Protein Analysis

146

Amino Acids

17.13

Weight (kDa)

5.86

Isoelectric Point (pI)

34.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cornichon PF03311 6 - 124 1.3e-36 Cornichon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012351)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12180
fragaria_vesca FvH4_6g22920
malus_domestica MD12G1063300.v1.1 MD14G1064100.v1.1
prunus_persica Prupe.7G070300_v2.0.a1
pyrus_communis pycom12g05570 pycom14g05160
rosa_chinensis RchiOBHm_Chr3g0480731
rosa_laevigata RLG00000023459
rosa_multiflora Rmu_sc0001135.1_g000001 Rmu_sc0003902.1_g000023
rosa_roxburghii Rroxscaffold_6G00401120
rosa_rugosa Rorug03G0185200 Rorug03G0185300
rosa_samantha Rh3AG237300 Rh3BG270500 Rh3CG266700 Rh3DG262800
rosa_wichuraiana Rw3G021250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 42
AcuI CTGAAG 1 cut(s) 312
AdeI CACNNNGTG 1 cut(s) 175
AfaI GTAC 1 cut(s) 119
AgsI TTSAA 1 cut(s) 400
AhlI ACTAGT 1 cut(s) 410
AluBI AGCT 2 cut(s) 243, 392
AluI AGCT 2 cut(s) 243, 392
ApeKI GCWGC 2 cut(s) 271, 392
BbvI GCAGC 2 cut(s) 283, 379
BcuI ACTAGT 1 cut(s) 410
BfaI CTAG 2 cut(s) 240, 411
BisI GCNGC 2 cut(s) 272, 393
BlsI GCNGC 2 cut(s) 273, 394
BmsI GCATC 2 cut(s) 144, 283
BpmI CTGGAG 1 cut(s) 46
Bpu10I CCTNAGC 1 cut(s) 388
Bse1I ACTGG 1 cut(s) 73
BseMII CTCAG 2 cut(s) 147, 306
BseNI ACTGG 1 cut(s) 73
BseXI GCAGC 2 cut(s) 283, 379
BsgI GTGCAG 1 cut(s) 346
BsiWI CGTACG 1 cut(s) 117
BslFI GGGAC 2 cut(s) 137, 215
BsmFI GGGAC 2 cut(s) 137, 215
BspCNI CTCAG 2 cut(s) 148, 307
BsrI ACTGG 1 cut(s) 73
Bst4CI ACNGT 1 cut(s) 229
Bst6I CTCTTC 1 cut(s) 59
BstC8I GCNNGC 1 cut(s) 329
BstDEI CTNAG 3 cut(s) 156, 315, 388
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstNSI RCATGY 1 cut(s) 425
BstV1I GCAGC 2 cut(s) 283, 379
Cac8I GCNNGC 1 cut(s) 329
CseI GACGC 1 cut(s) 28
Csp6I GTAC 1 cut(s) 118
CviAII CATG 3 cut(s) 214, 253, 422
CviQI GTAC 1 cut(s) 118
DdeI CTNAG 3 cut(s) 156, 315, 388
DraIII CACNNNGTG 1 cut(s) 175
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
Eco57I CTGAAG 1 cut(s) 312
FaeI CATG 3 cut(s) 217, 256, 425
FaiI YATR 7 cut(s) 78, 108, 164, 215, 246, 254, 423
FaqI GGGAC 2 cut(s) 137, 215
FatI CATG 3 cut(s) 213, 252, 421
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 2 cut(s) 272, 393
Fsp4HI GCNGC 2 cut(s) 272, 393
FspBI CTAG 2 cut(s) 240, 411
GluI GCNGC 2 cut(s) 272, 393
GsuI CTGGAG 1 cut(s) 46
HgaI GACGC 1 cut(s) 28
Hin1II CATG 3 cut(s) 217, 256, 425
HincII GTYRAC 2 cut(s) 43, 87
HindII GTYRAC 2 cut(s) 43, 87
HpaI GTTAAC 1 cut(s) 87
Hpy166II GTNNAC 2 cut(s) 43, 87
Hpy8I GTNNAC 2 cut(s) 43, 87
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 1 cut(s) 368
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4V TGCA 3 cut(s) 169, 185, 327
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 3 cut(s) 156, 315, 388
Hsp92II CATG 3 cut(s) 217, 256, 425
KspAI GTTAAC 1 cut(s) 87
LpnPI CCDG 6 cut(s) 76, 86, 168, 286, 313, 364
Lsp1109I GCAGC 2 cut(s) 283, 379
LweI GCATC 2 cut(s) 144, 283
MaeI CTAG 2 cut(s) 240, 411
MaeIII GTNAC 2 cut(s) 223, 286
MboII GAAGA 3 cut(s) 46, 331, 428
MfeI CAATTG 1 cut(s) 143
MluCI AATT 2 cut(s) 11, 143
MnlI CCTC 6 cut(s) 62, 70, 91, 203, 230, 243
MseI TTAA 2 cut(s) 86, 309
MunI CAATTG 1 cut(s) 143
MwoI GCNNNNNNNGC 1 cut(s) 56
NlaIII CATG 3 cut(s) 217, 256, 425
NmeAIII GCCGAG 1 cut(s) 181
NspI RCATGY 1 cut(s) 425
Pfl23II CGTACG 1 cut(s) 117
PkrI GCNGC 2 cut(s) 273, 394
PspLI CGTACG 1 cut(s) 117
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
SalI GTCGAC 1 cut(s) 41
SaqAI TTAA 2 cut(s) 86, 309
SatI GCNGC 2 cut(s) 272, 393
SetI ASST 4 cut(s) 48, 245, 389, 394
SfaNI GCATC 2 cut(s) 144, 283
SpeI ACTAGT 1 cut(s) 410
Sse9I AATT 2 cut(s) 11, 143
SspMI CTAG 2 cut(s) 240, 411
TaaI ACNGT 1 cut(s) 229
TaqI TCGA 1 cut(s) 42
TasI AATT 2 cut(s) 11, 143
Tru1I TTAA 2 cut(s) 86, 309
Tru9I TTAA 2 cut(s) 86, 309
TseI GCWGC 2 cut(s) 271, 392
TspDTI ATGAA 2 cut(s) 151, 202
XceI RCATGY 1 cut(s) 425
XmiI GTMKAC 1 cut(s) 42
XspI CTAG 2 cut(s) 240, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.