Rw3G021250

Protein cornichon homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0012351
Physical Location & Seq
Forward (+)
25567178 .. 25572052
4875 bp
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UTR
Exon/CDS
Intron
Rw3G021250.1

Sequence Viewer

Length: 441 bp
ATGGCTTGGGATTTGATCTATTGGCTACTCTGCTTCTGCATCGACATTGCCCTCTTCGCTTCAAGCCTTTATCAGTATGTGATGCTAACGGATTTGGAGGCAGACTATATCAATCCGTTTGAATTATCGACTCGCATCAATCAATTGGTCGTCCCTGAGTTCATTGTGCATGGAGTGTTCTGTGCTCTGTTCCTCCTGGCACAGCGTTGGTTCATGTTCCTCTTCACAGTCCCCCTTACTTACTATATCGTGATGCTGTTTGTAAAACAAAAGCATCTTATTGATGTCACTGAAGTATTCAGGGTTCTTAATACTGAGAAGAAGTGCCGGCTTGTCAAGCTTGGTGTCTACTTTTGTCTCCTCGCTATAATCATTATCAGGCTTACAATATCTACTTTCAATTCTTTGACTGATGAAGAACATGCTGTGGATTTTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cornichon

Protein Analysis

146

Amino Acids

17.26

Weight (kDa)

5.22

Isoelectric Point (pI)

22.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cornichon PF03311 6 - 124 1.8e-36 Cornichon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012351)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12180
fragaria_vesca FvH4_6g22920
malus_domestica MD12G1063300.v1.1 MD14G1064100.v1.1
prunus_persica Prupe.7G070300_v2.0.a1
pyrus_communis pycom12g05570 pycom14g05160
rosa_chinensis RchiOBHm_Chr3g0480731
rosa_laevigata RLG00000023459
rosa_multiflora Rmu_sc0001135.1_g000001 Rmu_sc0003902.1_g000023
rosa_roxburghii Rroxscaffold_6G00401120
rosa_rugosa Rorug03G0185200 Rorug03G0185300
rosa_samantha Rh3AG237300 Rh3BG270500 Rh3CG266700 Rh3DG262800
rosa_wichuraiana Rw3G021250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 348
AcuI CTGAAG 1 cut(s) 312
AgsI TTSAA 3 cut(s) 63, 122, 400
AjnI CCWGG 1 cut(s) 195
AluBI AGCT 1 cut(s) 340
AluI AGCT 1 cut(s) 340
Alw21I GWGCWC 1 cut(s) 187
Alw26I GTCTC 1 cut(s) 362
Bbv12I GWGCWC 1 cut(s) 187
BciT130I CCWGG 1 cut(s) 197
BcoDI GTCTC 1 cut(s) 362
Bme1390I CCNGG 1 cut(s) 197
BmrFI CCNGG 1 cut(s) 197
BmsI GCATC 5 cut(s) 48, 72, 144, 243, 283
Bse118I RCCGGY 1 cut(s) 327
Bse3DI GCAATG 1 cut(s) 45
BseBI CCWGG 1 cut(s) 197
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 2 cut(s) 147, 306
BseRI GAGGAG 1 cut(s) 350
BsiHKAI GWGCWC 1 cut(s) 187
BsiSI CCGG 1 cut(s) 328
BslFI GGGAC 2 cut(s) 137, 215
BsmAI GTCTC 1 cut(s) 362
BsmFI GGGAC 2 cut(s) 137, 215
Bsp1286I GDGCHC 1 cut(s) 187
Bsp143I GATC 1 cut(s) 15
BspCNI CTCAG 2 cut(s) 148, 307
BsrDI GCAATG 1 cut(s) 45
BsrFI RCCGGY 1 cut(s) 327
BssAI RCCGGY 1 cut(s) 327
BssMI GATC 1 cut(s) 15
Bst2UI CCWGG 1 cut(s) 197
Bst4CI ACNGT 1 cut(s) 229
Bst6I CTCTTC 2 cut(s) 59, 227
BstC8I GCNNGC 1 cut(s) 329
BstDEI CTNAG 2 cut(s) 156, 315
BstKTI GATC 1 cut(s) 18
BstMAI GTCTC 1 cut(s) 362
BstMBI GATC 1 cut(s) 15
BstMWI GCNNNNNNNGC 2 cut(s) 56, 337
BstNI CCWGG 1 cut(s) 197
BstNSI RCATGY 1 cut(s) 425
BstSCI CCNGG 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 288
Cac8I GCNNGC 1 cut(s) 329
Cfr10I RCCGGY 1 cut(s) 327
CviAII CATG 3 cut(s) 170, 214, 422
CviJI RGCY 6 cut(s) 5, 25, 66, 331, 340, 382
CviKI_1 RGCY 6 cut(s) 5, 25, 66, 331, 340, 382
DdeI CTNAG 2 cut(s) 156, 315
DpnI GATC 1 cut(s) 17
DpnII GATC 1 cut(s) 15
Eam1104I CTCTTC 2 cut(s) 59, 227
EarI CTCTTC 2 cut(s) 59, 227
Eco57I CTGAAG 1 cut(s) 312
EcoRII CCWGG 1 cut(s) 195
FaeI CATG 3 cut(s) 173, 217, 425
FaiI YATR 7 cut(s) 78, 108, 171, 215, 246, 368, 423
FaqI GGGAC 2 cut(s) 137, 215
FatI CATG 3 cut(s) 169, 213, 421
FblI GTMKAC 1 cut(s) 348
HapII CCGG 1 cut(s) 328
Hin1II CATG 3 cut(s) 173, 217, 425
HindIII AAGCTT 1 cut(s) 338
HinfI GANTC 1 cut(s) 130
HpaII CCGG 1 cut(s) 328
Hpy166II GTNNAC 1 cut(s) 349
Hpy188III TCNNGA 1 cut(s) 250
Hpy8I GTNNAC 1 cut(s) 349
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4V TGCA 2 cut(s) 39, 169
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 337
HpyF3I CTNAG 2 cut(s) 156, 315
Hsp92II CATG 3 cut(s) 173, 217, 425
KroI GCCGGC 1 cut(s) 327
KroNI GCCGGC 1 cut(s) 329
Kzo9I GATC 1 cut(s) 15
LpnPI CCDG 6 cut(s) 168, 182, 209, 286, 341, 364
LweI GCATC 5 cut(s) 48, 72, 144, 243, 283
MaeIII GTNAC 1 cut(s) 286
MalI GATC 1 cut(s) 17
MboI GATC 1 cut(s) 15
MboII GAAGA 4 cut(s) 46, 214, 331, 428
MfeI CAATTG 1 cut(s) 143
MhlI GDGCHC 1 cut(s) 187
MluCI AATT 3 cut(s) 122, 143, 400
MlyI GAGTC 1 cut(s) 124
MnlI CCTC 5 cut(s) 62, 91, 203, 230, 371
MroNI GCCGGC 1 cut(s) 327
MseI TTAA 1 cut(s) 309
MspI CCGG 1 cut(s) 328
MspR9I CCNGG 1 cut(s) 197
MunI CAATTG 1 cut(s) 143
MvaI CCWGG 1 cut(s) 197
MwoI GCNNNNNNNGC 2 cut(s) 56, 337
NaeI GCCGGC 1 cut(s) 329
NdeII GATC 1 cut(s) 15
NgoMIV GCCGGC 1 cut(s) 327
NlaIII CATG 3 cut(s) 173, 217, 425
NmuCI GTSAC 1 cut(s) 286
NspI RCATGY 1 cut(s) 425
PdiI GCCGGC 1 cut(s) 329
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 195
PspGI CCWGG 1 cut(s) 195
PsrI GAACNNNNNNTAC 2 cut(s) 288, 320
SaqAI TTAA 1 cut(s) 309
Sau3AI GATC 1 cut(s) 15
SchI GAGTC 1 cut(s) 124
ScrFI CCNGG 1 cut(s) 197
SduI GDGCHC 1 cut(s) 187
SetI ASST 1 cut(s) 342
SfaNI GCATC 5 cut(s) 48, 72, 144, 243, 283
Sse9I AATT 3 cut(s) 122, 143, 400
StyD4I CCNGG 1 cut(s) 195
TaaI ACNGT 1 cut(s) 229
TaqI TCGA 2 cut(s) 42, 128
TasI AATT 3 cut(s) 122, 143, 400
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TscAI CASTG 1 cut(s) 295
TseFI GTSAC 1 cut(s) 286
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 3 cut(s) 151, 202, 429
TspGWI ACGGA 2 cut(s) 104, 105
TspRI CASTG 1 cut(s) 295
XceI RCATGY 1 cut(s) 425
XmiI GTMKAC 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.