Rh3DG262800

Protein cornichon homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0012351
Physical Location & Seq
Forward (+)
26101290 .. 26106654
5365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG262800.1

Sequence Viewer

Length: 561 bp
ATGGCTTGGGATTTGATCTATTGGCTACTCTGCTTCTGCATCGACATTGCCCTCTTCGCTTCAAGCCTTTATCAGTATGTGATGCTGACGGATTTGGAGGCAGACTATATCAATCCGTTTGAATTATCGACTCGCATCAATCAATTGGTCGTCCCTGAGTTCATTGTGCATGGAGTGTTCTGTGCTCTGTTCCTCCTGGCACAGCGTTGGTTCATGTTCCTCTTCACAGTCCCCCTTACTTACTATATCGTGATGCTGTTTGTAAAACAAAAGCATCTTATTGATGTCACTGAAGTATTCAGGGTTCTTAATACTGAGAAGAAGTGCCGGCTTGTCAAGCTTGGTGTCTACTTTTGTCTCCTCGCTATAATCATTATCAGGTTTGTTCTTTACTGTATATATAGAGTAAAATATAGATTAGCCTTTGCTTTATTAATTGGTTTGTTAATTCTAATTACCTGTGTCTTGCTGTTTGGTTATAGAATTCTCATTTCTGCAATATTTGTGCCGTGGTCCGGATCTGAAGAATTAGACATTCGCGCCTCTTTTCTAGAATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cornichon

Protein Analysis

186

Amino Acids

21.94

Weight (kDa)

7.53

Isoelectric Point (pI)

20.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cornichon PF03311 6 - 124 1.6e-36 Cornichon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012351)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12180
fragaria_vesca FvH4_6g22920
malus_domestica MD12G1063300.v1.1 MD14G1064100.v1.1
prunus_persica Prupe.7G070300_v2.0.a1
pyrus_communis pycom12g05570 pycom14g05160
rosa_chinensis RchiOBHm_Chr3g0480731
rosa_laevigata RLG00000023459
rosa_multiflora Rmu_sc0001135.1_g000001 Rmu_sc0003902.1_g000023
rosa_roxburghii Rroxscaffold_6G00401120
rosa_rugosa Rorug03G0185200 Rorug03G0185300
rosa_samantha Rh3AG237300 Rh3BG270500 Rh3CG266700 Rh3DG262800
rosa_wichuraiana Rw3G021250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 348
AccII CGCG 1 cut(s) 540
AccIII TCCGGA 1 cut(s) 515
AclWI GGATC 1 cut(s) 526
AcsI RAATTY 2 cut(s) 483, 554
AcuI CTGAAG 2 cut(s) 312, 543
AfiI CCNNNNNNNGG 1 cut(s) 515
AgsI TTSAA 2 cut(s) 63, 122
AjnI CCWGG 1 cut(s) 195
AluBI AGCT 1 cut(s) 340
AluI AGCT 1 cut(s) 340
Alw21I GWGCWC 1 cut(s) 187
Alw26I GTCTC 1 cut(s) 362
AlwI GGATC 1 cut(s) 526
Aor13HI TCCGGA 1 cut(s) 515
ApoI RAATTY 2 cut(s) 483, 554
AseI ATTAAT 1 cut(s) 434
AspLEI GCGC 1 cut(s) 542
AspS9I GGNCC 1 cut(s) 513
AvaII GGWCC 1 cut(s) 513
Bbv12I GWGCWC 1 cut(s) 187
BceAI ACGGC 1 cut(s) 493
BciT130I CCWGG 1 cut(s) 197
BcoDI GTCTC 1 cut(s) 362
BfaI CTAG 1 cut(s) 551
Bme1390I CCNGG 1 cut(s) 197
Bme18I GGWCC 1 cut(s) 513
BmgT120I GGNCC 1 cut(s) 513
BmrFI CCNGG 1 cut(s) 197
BmsI GCATC 5 cut(s) 48, 72, 144, 243, 283
BsaJI CCNNGG 1 cut(s) 509
BsaWI WCCGGW 1 cut(s) 515
Bsc4I CCNNNNNNNGG 1 cut(s) 515
Bse118I RCCGGY 1 cut(s) 327
Bse3DI GCAATG 1 cut(s) 45
BseAI TCCGGA 1 cut(s) 515
BseBI CCWGG 1 cut(s) 197
BseDI CCNNGG 1 cut(s) 509
BseLI CCNNNNNNNGG 1 cut(s) 515
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 2 cut(s) 147, 306
BseRI GAGGAG 1 cut(s) 350
Bsh1236I CGCG 1 cut(s) 540
BsiHKAI GWGCWC 1 cut(s) 187
BsiSI CCGG 2 cut(s) 328, 516
BslFI GGGAC 2 cut(s) 137, 215
BslI CCNNNNNNNGG 1 cut(s) 515
BsmAI GTCTC 1 cut(s) 362
BsmFI GGGAC 2 cut(s) 137, 215
Bsp1286I GDGCHC 1 cut(s) 187
Bsp13I TCCGGA 1 cut(s) 515
Bsp143I GATC 2 cut(s) 15, 518
BspCNI CTCAG 2 cut(s) 148, 307
BspEI TCCGGA 1 cut(s) 515
BspFNI CGCG 1 cut(s) 540
BspPI GGATC 1 cut(s) 526
BsrDI GCAATG 1 cut(s) 45
BsrFI RCCGGY 1 cut(s) 327
BssAI RCCGGY 1 cut(s) 327
BssECI CCNNGG 1 cut(s) 509
BssMI GATC 2 cut(s) 15, 518
Bst2UI CCWGG 1 cut(s) 197
Bst4CI ACNGT 2 cut(s) 229, 395
Bst6I CTCTTC 2 cut(s) 59, 227
BstC8I GCNNGC 1 cut(s) 329
BstDEI CTNAG 2 cut(s) 156, 315
BstDSI CCRYGG 1 cut(s) 509
BstFNI CGCG 1 cut(s) 540
BstHHI GCGC 1 cut(s) 542
BstKTI GATC 2 cut(s) 18, 521
BstMAI GTCTC 1 cut(s) 362
BstMBI GATC 2 cut(s) 15, 518
BstMWI GCNNNNNNNGC 2 cut(s) 56, 337
BstNI CCWGG 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 195
BstUI CGCG 1 cut(s) 540
BstX2I RGATCY 1 cut(s) 518
BstYI RGATCY 1 cut(s) 518
BtgI CCRYGG 1 cut(s) 509
BtsIMutI CAGTG 1 cut(s) 288
Cac8I GCNNGC 1 cut(s) 329
CfoI GCGC 1 cut(s) 542
Cfr10I RCCGGY 1 cut(s) 327
Cfr13I GGNCC 1 cut(s) 513
CviAII CATG 2 cut(s) 170, 214
CviJI RGCY 6 cut(s) 5, 25, 66, 331, 340, 422
CviKI_1 RGCY 6 cut(s) 5, 25, 66, 331, 340, 422
DdeI CTNAG 2 cut(s) 156, 315
DpnI GATC 2 cut(s) 17, 520
DpnII GATC 2 cut(s) 15, 518
Eam1104I CTCTTC 2 cut(s) 59, 227
EarI CTCTTC 2 cut(s) 59, 227
Eco47I GGWCC 1 cut(s) 513
Eco57I CTGAAG 2 cut(s) 312, 543
EcoRI GAATTC 2 cut(s) 483, 554
EcoRII CCWGG 1 cut(s) 195
FaeI CATG 2 cut(s) 173, 217
FaqI GGGAC 2 cut(s) 137, 215
FatI CATG 2 cut(s) 169, 213
FblI GTMKAC 1 cut(s) 348
FspBI CTAG 1 cut(s) 551
GlaI GCGC 1 cut(s) 541
HapII CCGG 2 cut(s) 328, 516
HhaI GCGC 1 cut(s) 542
Hin1II CATG 2 cut(s) 173, 217
Hin6I GCGC 1 cut(s) 540
HinP1I GCGC 1 cut(s) 540
HindIII AAGCTT 1 cut(s) 338
HinfI GANTC 1 cut(s) 130
HpaII CCGG 2 cut(s) 328, 516
Hpy166II GTNNAC 1 cut(s) 349
Hpy188I TCNGA 1 cut(s) 523
Hpy188III TCNNGA 3 cut(s) 250, 516, 551
Hpy8I GTNNAC 1 cut(s) 349
HpyCH4III ACNGT 2 cut(s) 229, 395
HpyCH4V TGCA 3 cut(s) 39, 169, 497
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 337
HpyF3I CTNAG 2 cut(s) 156, 315
Hsp92II CATG 2 cut(s) 173, 217
HspAI GCGC 1 cut(s) 540
Kpn2I TCCGGA 1 cut(s) 515
KroI GCCGGC 1 cut(s) 327
KroNI GCCGGC 1 cut(s) 329
Kzo9I GATC 2 cut(s) 15, 518
LpnPI CCDG 8 cut(s) 168, 182, 209, 286, 341, 364, 472, 529
LweI GCATC 5 cut(s) 48, 72, 144, 243, 283
MaeI CTAG 1 cut(s) 551
MaeIII GTNAC 1 cut(s) 286
MalI GATC 2 cut(s) 17, 520
MboI GATC 2 cut(s) 15, 518
MboII GAAGA 4 cut(s) 46, 214, 331, 536
MfeI CAATTG 1 cut(s) 143
MflI RGATCY 1 cut(s) 518
MhlI GDGCHC 1 cut(s) 187
MluCI AATT 8 cut(s) 122, 143, 435, 447, 453, 483, 527, 554
MlyI GAGTC 1 cut(s) 124
MnlI CCTC 6 cut(s) 62, 91, 203, 230, 371, 553
MroI TCCGGA 1 cut(s) 515
MroNI GCCGGC 1 cut(s) 327
MseI TTAA 3 cut(s) 309, 434, 446
MspI CCGG 2 cut(s) 328, 516
MspR9I CCNGG 1 cut(s) 197
MunI CAATTG 1 cut(s) 143
MvaI CCWGG 1 cut(s) 197
MvnI CGCG 1 cut(s) 540
MwoI GCNNNNNNNGC 2 cut(s) 56, 337
NaeI GCCGGC 1 cut(s) 329
NdeII GATC 2 cut(s) 15, 518
NgoMIV GCCGGC 1 cut(s) 327
NlaIII CATG 2 cut(s) 173, 217
NmuCI GTSAC 1 cut(s) 286
PdiI GCCGGC 1 cut(s) 329
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
PshBI ATTAAT 1 cut(s) 434
Psp6I CCWGG 1 cut(s) 195
PspGI CCWGG 1 cut(s) 195
PspPI GGNCC 1 cut(s) 513
PsrI GAACNNNNNNTAC 2 cut(s) 288, 320
PsuI RGATCY 1 cut(s) 518
SaqAI TTAA 3 cut(s) 309, 434, 446
Sau3AI GATC 2 cut(s) 15, 518
Sau96I GGNCC 1 cut(s) 513
SchI GAGTC 1 cut(s) 124
ScrFI CCNGG 1 cut(s) 197
SduI GDGCHC 1 cut(s) 187
SetI ASST 3 cut(s) 342, 383, 461
SfaNI GCATC 5 cut(s) 48, 72, 144, 243, 283
SinI GGWCC 1 cut(s) 513
Sse9I AATT 8 cut(s) 122, 143, 435, 447, 453, 483, 527, 554
SspI AATATT 1 cut(s) 501
SspMI CTAG 1 cut(s) 551
StyD4I CCNGG 1 cut(s) 195
TaaI ACNGT 2 cut(s) 229, 395
TaqI TCGA 2 cut(s) 42, 128
TasI AATT 8 cut(s) 122, 143, 435, 447, 453, 483, 527, 554
Tru1I TTAA 3 cut(s) 309, 434, 446
Tru9I TTAA 3 cut(s) 309, 434, 446
TscAI CASTG 1 cut(s) 295
TseFI GTSAC 1 cut(s) 286
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 2 cut(s) 151, 202
TspGWI ACGGA 2 cut(s) 104, 105
TspRI CASTG 1 cut(s) 295
VpaK11BI GGWCC 1 cut(s) 513
VspI ATTAAT 1 cut(s) 434
XapI RAATTY 2 cut(s) 483, 554
XbaI TCTAGA 1 cut(s) 550
XmiI GTMKAC 1 cut(s) 348
XspI CTAG 1 cut(s) 551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.