Rorug03G0185200

Protein cornichon homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0012351
Physical Location & Seq
Reverse (-)
15996473 .. 15997162
690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0185200.1

Sequence Viewer

Length: 690 bp
ATGGAACTACAACAACAGCAACCAACAGAGGAGGGAGGAAACACCCAAGCAGCCGGAAGTAGTGCCAACATGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGAACAAATAAGAATCCTCAAGGATCTTTACTACGTCAAGGGATTTAAGCGTCCAACTACAGAGCACATTCACGAGATCTGCCTCCAGCTGAACCAGTATGGACATGTTGAGGGTAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAATAGGTGTAATCAGGCTGCTCCAGTGCCCATGGGAACTAGTTCTCTTGGTACTGGTGGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGTGGATCCATCGACATCAATTTTGGGCCAGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGTAGATCCATTGATCTCAACTTTGGTTCCACCTATTCTACTGGTAATGAAGGATTTCTTGATTTAAATTTTGTTTCATATTCTTCCTCACACTTCAACACTAATACCAGTACAACTCTTTTGGCACAACAGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTCAAACTCTTCCTTTGTTCCCCGTGCATGGCGAGGACGTCTTTGGTAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cornichon

Protein Analysis

229

Amino Acids

25.32

Weight (kDa)

5.73

Isoelectric Point (pI)

45.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 30 - 91 9.5e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012351)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12180
fragaria_vesca FvH4_6g22920
malus_domestica MD12G1063300.v1.1 MD14G1064100.v1.1
prunus_persica Prupe.7G070300_v2.0.a1
pyrus_communis pycom12g05570 pycom14g05160
rosa_chinensis RchiOBHm_Chr3g0480731
rosa_laevigata RLG00000023459
rosa_multiflora Rmu_sc0001135.1_g000001 Rmu_sc0003902.1_g000023
rosa_roxburghii Rroxscaffold_6G00401120
rosa_rugosa Rorug03G0185200 Rorug03G0185300
rosa_samantha Rh3AG237300 Rh3BG270500 Rh3CG266700 Rh3DG262800
rosa_wichuraiana Rw3G021250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 677
AccB7I CCANNNNNTGG 1 cut(s) 413
AclWI GGATC 8 cut(s) 141, 330, 343, 378, 391, 411, 424, 459
AcsI RAATTY 1 cut(s) 526
AcyI GRCGYC 1 cut(s) 674
AfaI GTAC 3 cut(s) 91, 328, 571
AfiI CCNNNNNNNGG 2 cut(s) 413, 664
AflIII ACRYGT 1 cut(s) 214
AgsI TTSAA 2 cut(s) 556, 640
AhlI ACTAGT 2 cut(s) 314, 443
AjnI CCWGG 2 cut(s) 92, 629
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 2 cut(s) 199, 410
AluI AGCT 2 cut(s) 199, 410
Alw21I GWGCWC 1 cut(s) 177
AlwI GGATC 8 cut(s) 141, 330, 343, 378, 391, 411, 424, 459
Ama87I CYCGRG 1 cut(s) 261
AoxI GGCC 1 cut(s) 404
ApeKI GCWGC 2 cut(s) 50, 293
ApoI RAATTY 1 cut(s) 526
ArsI GACNNNNNNTTYG 4 cut(s) 383, 415, 416, 448
Asp700I GAANNNNTTC 2 cut(s) 316, 513
AspS9I GGNCC 3 cut(s) 357, 404, 438
AsuHPI GGTGA 1 cut(s) 619
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 2 cut(s) 357, 438
BaeGI GKGCMC 1 cut(s) 306
BamHI GGATCC 3 cut(s) 335, 383, 416
BanII GRGCYC 1 cut(s) 262
BauI CACGAG 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 177
BbvI GCAGC 2 cut(s) 62, 280
BccI CCATC 2 cut(s) 395, 452
BceAI ACGGC 1 cut(s) 72
BciT130I CCWGG 2 cut(s) 94, 631
BcuI ACTAGT 2 cut(s) 314, 443
BfaI CTAG 2 cut(s) 315, 444
BfmI CTRYAG 1 cut(s) 168
BglII AGATCT 1 cut(s) 186
BisI GCNGC 2 cut(s) 51, 294
BlsI GCNGC 2 cut(s) 52, 295
Bme1390I CCNGG 2 cut(s) 94, 631
Bme18I GGWCC 2 cut(s) 357, 438
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 3 cut(s) 357, 404, 438
BmiI GGNNCC 7 cut(s) 245, 337, 358, 385, 418, 439, 487
BmrFI CCNGG 2 cut(s) 94, 631
BpmI CTGGAG 3 cut(s) 93, 179, 282
BpuEI CTTGAG 1 cut(s) 113
BsaHI GRCGYC 1 cut(s) 674
BsaJI CCNNGG 1 cut(s) 306
Bsc4I CCNNNNNNNGG 2 cut(s) 413, 664
Bse1I ACTGG 7 cut(s) 205, 299, 334, 367, 376, 505, 567
BseBI CCWGG 2 cut(s) 94, 631
BseDI CCNNGG 1 cut(s) 306
BseGI GGATG 1 cut(s) 601
BseLI CCNNNNNNNGG 2 cut(s) 413, 664
BseNI ACTGG 7 cut(s) 205, 299, 334, 367, 376, 505, 567
BseRI GAGGAG 3 cut(s) 44, 632, 635
BseSI GKGCMC 1 cut(s) 306
BseXI GCAGC 2 cut(s) 62, 280
BshFI GGCC 1 cut(s) 406
BsiHKAI GWGCWC 1 cut(s) 177
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 1 cut(s) 54
BslI CCNNNNNNNGG 2 cut(s) 413, 664
BsnI GGCC 1 cut(s) 406
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 3 cut(s) 177, 262, 306
Bsp143I GATC 9 cut(s) 133, 186, 335, 343, 383, 416, 464, 472, 624
Bsp19I CCATGG 1 cut(s) 306
BspANI GGCC 1 cut(s) 406
BspLI GGNNCC 7 cut(s) 245, 337, 358, 385, 418, 439, 487
BspPI GGATC 8 cut(s) 141, 330, 343, 378, 391, 411, 424, 459
BsrI ACTGG 7 cut(s) 205, 299, 334, 367, 376, 505, 567
BssECI CCNNGG 1 cut(s) 306
BssMI GATC 9 cut(s) 133, 186, 335, 343, 383, 416, 464, 472, 624
BssNI GRCGYC 1 cut(s) 674
BssSI CACGAG 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 2 cut(s) 94, 631
Bst6I CTCTTC 1 cut(s) 650
BstACI GRCGYC 1 cut(s) 674
BstC8I GCNNGC 1 cut(s) 408
BstDSI CCRYGG 1 cut(s) 306
BstEII GGTNACC 1 cut(s) 682
BstF5I GGATG 1 cut(s) 601
BstKTI GATC 9 cut(s) 136, 189, 338, 346, 386, 419, 467, 475, 627
BstMBI GATC 9 cut(s) 133, 186, 335, 343, 383, 416, 464, 472, 624
BstNI CCWGG 2 cut(s) 94, 631
BstNSI RCATGY 1 cut(s) 218
BstPI GGTNACC 1 cut(s) 682
BstSCI CCNGG 2 cut(s) 92, 629
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 1 cut(s) 306
BstV1I GCAGC 2 cut(s) 62, 280
BstX2I RGATCY 6 cut(s) 133, 186, 335, 383, 416, 464
BstYI RGATCY 6 cut(s) 133, 186, 335, 383, 416, 464
BsuRI GGCC 1 cut(s) 406
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 1 cut(s) 601
BtsIMutI CAGTG 2 cut(s) 306, 360
Cac8I GCNNGC 1 cut(s) 408
Cfr13I GGNCC 3 cut(s) 357, 404, 438
CseI GACGC 1 cut(s) 149
CsiI ACCWGGT 1 cut(s) 92
Csp6I GTAC 3 cut(s) 90, 327, 570
CviAII CATG 4 cut(s) 70, 215, 307, 664
CviJI RGCY 7 cut(s) 53, 87, 199, 260, 293, 406, 410
CviKI_1 RGCY 7 cut(s) 53, 87, 199, 260, 293, 406, 410
CviQI GTAC 3 cut(s) 90, 327, 570
DpnI GATC 9 cut(s) 135, 188, 337, 345, 385, 418, 466, 474, 626
DpnII GATC 9 cut(s) 133, 186, 335, 343, 383, 416, 464, 472, 624
DraI TTTAAA 1 cut(s) 525
Eam1104I CTCTTC 1 cut(s) 650
EarI CTCTTC 1 cut(s) 650
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 1 cut(s) 262
Eco47I GGWCC 2 cut(s) 357, 438
Eco88I CYCGRG 1 cut(s) 261
Eco91I GGTNACC 1 cut(s) 682
EcoO65I GGTNACC 1 cut(s) 682
EcoRII CCWGG 2 cut(s) 92, 629
EcoT14I CCWWGG 1 cut(s) 306
EcoT38I GRGCYC 1 cut(s) 262
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 4 cut(s) 73, 218, 310, 667
FaiI YATR 6 cut(s) 71, 210, 216, 308, 538, 665
FalI AAGNNNNNCTT 2 cut(s) 501, 533
FatI CATG 4 cut(s) 69, 214, 306, 663
Fnu4HI GCNGC 2 cut(s) 51, 294
FokI GGATG 1 cut(s) 588
FriOI GRGCYC 1 cut(s) 262
Fsp4HI GCNGC 2 cut(s) 51, 294
FspBI CTAG 2 cut(s) 315, 444
GluI GCNGC 2 cut(s) 51, 294
GsuI CTGGAG 3 cut(s) 93, 179, 282
HaeIII GGCC 1 cut(s) 406
HapII CCGG 1 cut(s) 54
HgaI GACGC 1 cut(s) 149
Hin1I GRCGYC 1 cut(s) 674
Hin1II CATG 4 cut(s) 73, 218, 310, 667
HinfI GANTC 2 cut(s) 100, 123
HpaII CCGG 1 cut(s) 54
HphI GGTGA 1 cut(s) 619
Hpy166II GTNNAC 2 cut(s) 360, 441
Hpy188III TCNNGA 5 cut(s) 110, 182, 247, 263, 518
Hpy8I GTNNAC 2 cut(s) 360, 441
HpyAV CCTTC 1 cut(s) 503
HpyCH4IV ACGT 3 cut(s) 144, 252, 674
HpyCH4V TGCA 2 cut(s) 609, 663
HpySE526I ACGT 3 cut(s) 144, 252, 674
Hsp92I GRCGYC 1 cut(s) 674
Hsp92II CATG 4 cut(s) 73, 218, 310, 667
Kzo9I GATC 9 cut(s) 133, 186, 335, 343, 383, 416, 464, 472, 624
LmnI GCTCC 1 cut(s) 301
Lsp1109I GCAGC 2 cut(s) 62, 280
MabI ACCWGGT 1 cut(s) 92
MaeI CTAG 2 cut(s) 315, 444
MaeII ACGT 3 cut(s) 144, 252, 674
MaeIII GTNAC 1 cut(s) 682
MalI GATC 9 cut(s) 135, 188, 337, 345, 385, 418, 466, 474, 626
MboI GATC 9 cut(s) 133, 186, 335, 343, 383, 416, 464, 472, 624
MboII GAAGA 2 cut(s) 534, 637
MflI RGATCY 6 cut(s) 133, 186, 335, 383, 416, 464
MhlI GDGCHC 3 cut(s) 177, 262, 306
MluCI AATT 4 cut(s) 349, 397, 430, 526
MmeI TCCRAC 1 cut(s) 188
MroXI GAANNNNTTC 2 cut(s) 316, 513
MseI TTAA 2 cut(s) 156, 524
MspA1I CMGCKG 2 cut(s) 199, 410
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 2 cut(s) 94, 631
MvaI CCWGG 2 cut(s) 94, 631
NcoI CCATGG 1 cut(s) 306
NdeII GATC 9 cut(s) 133, 186, 335, 343, 383, 416, 464, 472, 624
NlaIII CATG 4 cut(s) 73, 218, 310, 667
NlaIV GGNNCC 7 cut(s) 245, 337, 358, 385, 418, 439, 487
NspI RCATGY 1 cut(s) 218
PaeR7I CTCGAG 1 cut(s) 261
PciI ACATGT 1 cut(s) 214
PdmI GAANNNNTTC 2 cut(s) 316, 513
PfeI GAWTC 2 cut(s) 100, 123
PflMI CCANNNNNTGG 1 cut(s) 413
PkrI GCNGC 2 cut(s) 52, 295
PscI ACATGT 1 cut(s) 214
Psp6I CCWGG 2 cut(s) 92, 629
PspEI GGTNACC 1 cut(s) 682
PspGI CCWGG 2 cut(s) 92, 629
PspN4I GGNNCC 7 cut(s) 245, 337, 358, 385, 418, 439, 487
PspPI GGNCC 3 cut(s) 357, 404, 438
PsuI RGATCY 6 cut(s) 133, 186, 335, 383, 416, 464
PvuII CAGCTG 2 cut(s) 199, 410
RsaI GTAC 3 cut(s) 91, 328, 571
RsaNI GTAC 3 cut(s) 90, 327, 570
SaqAI TTAA 2 cut(s) 156, 524
SatI GCNGC 2 cut(s) 51, 294
Sau3AI GATC 9 cut(s) 133, 186, 335, 343, 383, 416, 464, 472, 624
Sau96I GGNCC 3 cut(s) 357, 404, 438
ScrFI CCNGG 2 cut(s) 94, 631
SduI GDGCHC 3 cut(s) 177, 262, 306
SexAI ACCWGGT 1 cut(s) 92
SfcI CTRYAG 1 cut(s) 168
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 2 cut(s) 357, 438
SlaI CTCGAG 1 cut(s) 261
SmiI ATTTAAAT 1 cut(s) 525
SmlI CTYRAG 2 cut(s) 128, 261
SmoI CTYRAG 2 cut(s) 128, 261
SpeI ACTAGT 2 cut(s) 314, 443
Sse9I AATT 4 cut(s) 349, 397, 430, 526
SspMI CTAG 2 cut(s) 315, 444
StyD4I CCNGG 2 cut(s) 92, 629
StyI CCWWGG 1 cut(s) 306
SwaI ATTTAAAT 1 cut(s) 525
TaiI ACGT 3 cut(s) 147, 255, 677
TaqI TCGA 2 cut(s) 262, 390
TasI AATT 4 cut(s) 349, 397, 430, 526
TatI WGTACW 1 cut(s) 569
TfiI GAWTC 2 cut(s) 100, 123
Tru1I TTAA 2 cut(s) 156, 524
Tru9I TTAA 2 cut(s) 156, 524
TscAI CASTG 2 cut(s) 306, 367
TseI GCWGC 2 cut(s) 50, 293
TspDTI ATGAA 3 cut(s) 290, 522, 525
TspRI CASTG 2 cut(s) 306, 367
Van91I CCANNNNNTGG 1 cut(s) 413
VpaK11BI GGWCC 2 cut(s) 357, 438
XapI RAATTY 1 cut(s) 526
XceI RCATGY 1 cut(s) 218
XhoI CTCGAG 1 cut(s) 261
XmnI GAANNNNTTC 2 cut(s) 316, 513
XspI CTAG 2 cut(s) 315, 444
ZraI GACGTC 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.