Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014236

Physical Location & Seq

Genomic Coordinates Forward (+)

4099199 .. 4100534

Gene Structure 1336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G12890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCATCATCTCTTCCTCAGTTCTACGCTGATTTCACAACATTTTCCTGCGAGACTTCTTCGCAGTTTCACGGCTCTTCTTCATGTCCTGACGTGGACTCTTCGTTATCCAGCTACCTCGACGACTGTTATGGCTCCTTCAACACCTCTTCTAATCCAGAATCCATCTTTGTACCCCAAGTCTTTGGGATTTCTGACGTCTCTGTGCCTGAATACAACAATTATTACCAGAAAATGAGTGTGAATAATGCCACACATTACTTTCATGGTGGAGATCATCAAGAATACTACGGCTTTTCACCGGAGATCAAGCCCTTGTTCCGTCCGGCCACAGGAGAGCAATCTTGGGGAAATAGTGAAGGAGGGATACAAGCTGAGCCAAATACAAAAGTGGGACGCTATTCGGTGGAGGAACGTAAAGACAGAATCATGAGGTACTTGAAGAAGAAGAACCAACGCAACTTCAATAAGACCATCAAGTATGTGTGTCGTAAAACCCTAGCCGACAGGCGTGTTCGTGTTCGCGGCCGATTTGCTAGAAACAATGACACATGTGAAGAACAACCTCACATGTCTAAGAATCACAACAACCATTCTGAAAAAGAGGAAGATATGTTTTCAGGATCAGACGACTATCTAATCCAGATGGAACACGATGACGGATGGCTTCACGAAGCAATGTCCAATCTGATTCCTTTTCCTTGTGAATTTGACGCTCCTGGAGATGCTCATCATCCAACCAATTGGAGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0090567 GO:0104004 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

251

Amino Acids

28.86

Weight (kDa)

5.53

Isoelectric Point (pI)

50.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	139 - 181	1.9e-16	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12890
fragaria_vesca	FvH4_3g15550
malus_domestica	MD05G1222200.v1.1 MD10G1203800.v1.1
prunus_persica	Prupe.4G138100_v2.0.a1
pyrus_communis	pycom05g20490
rosa_chinensis	RchiOBHm_Chr5g0026181
rosa_laevigata	RLG00000032910
rosa_multiflora	Rmu_sc0002909.1_g000012
rosa_roxburghii	Rroxscaffold_1G00053120
rosa_rugosa	Rorug05G0091600
rosa_samantha	Rh5AG184300 Rh5BG181100 Rh5CG200100 Rh5DG182700
rosa_wichuraiana	Rw5G016680 Rw5G016700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	201
AccII	CGCG	1 cut(s)	525
AciI	CCGC	1 cut(s)	525
AclWI	GGATC	1 cut(s)	631
AcoI	YGGCCR	2 cut(s)	327, 526
AcsI	RAATTY	1 cut(s)	707
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	2 cut(s)	174, 437
AfiI	CCNNNNNNNGG	1 cut(s)	332
AflIII	ACRYGT	2 cut(s)	551, 570
AgsI	TTSAA	3 cut(s)	142, 442, 466
AjiI	CACGTC	1 cut(s)	94
AjnI	CCWGG	1 cut(s)	718
AjuI	GAANNNNNNNTTGG	1 cut(s)	734
AluBI	AGCT	3 cut(s)	114, 374, 750
AluI	AGCT	3 cut(s)	114, 374, 750
Alw26I	GTCTC	2 cut(s)	47, 205
AlwI	GGATC	1 cut(s)	631
AoxI	GGCC	2 cut(s)	327, 526
ApoI	RAATTY	1 cut(s)	707
AsuHPI	GGTGA	1 cut(s)	291
BarI	GAAGNNNNNNTAC	2 cut(s)	351, 383
BccI	CCATC	4 cut(s)	173, 482, 640, 657
BceAI	ACGGC	2 cut(s)	88, 307
BciT130I	CCWGG	1 cut(s)	720
BciVI	GTATCC	1 cut(s)	360
BcoDI	GTCTC	2 cut(s)	47, 205
BfaI	CTAG	2 cut(s)	500, 537
BfuI	GTATCC	1 cut(s)	360
BisI	GCNGC	1 cut(s)	526
BlpI	GCTNAGC	1 cut(s)	375
BlsI	GCNGC	1 cut(s)	527
Bme1390I	CCNGG	1 cut(s)	720
BmgBI	CACGTC	1 cut(s)	94
BmiI	GGNNCC	1 cut(s)	136
BmrFI	CCNGG	1 cut(s)	720
BmsI	GCATC	2 cut(s)	14, 715
BpmI	CTGGAG	1 cut(s)	741
Bpu1102I	GCTNAGC	1 cut(s)	375
BsaBI	GATNNNNATC	1 cut(s)	729
BsaHI	GRCGYC	1 cut(s)	198
BsaWI	WCCGGW	1 cut(s)	301
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
Bse3DI	GCAATG	1 cut(s)	684
Bse8I	GATNNNNATC	1 cut(s)	729
BseBI	CCWGG	1 cut(s)	720
BseGI	GGATG	2 cut(s)	668, 733
BseJI	GATNNNNATC	1 cut(s)	729
BseLI	CCNNNNNNNGG	1 cut(s)	332
BseMI	GCAATG	1 cut(s)	684
BseMII	CTCAG	2 cut(s)	32, 366
BseX3I	CGGCCG	1 cut(s)	526
Bsh1236I	CGCG	1 cut(s)	525
Bsh1285I	CGRYCG	1 cut(s)	529
BshFI	GGCC	2 cut(s)	329, 528
BsiEI	CGRYCG	1 cut(s)	529
BsiSI	CCGG	2 cut(s)	302, 326
BslFI	GGGAC	1 cut(s)	408
BslI	CCNNNNNNNGG	1 cut(s)	332
BsmAI	GTCTC	2 cut(s)	47, 205
BsmBI	CGTCTC	1 cut(s)	205
BsmFI	GGGAC	1 cut(s)	408
BsnI	GGCC	2 cut(s)	329, 528
Bsp143I	GATC	3 cut(s)	274, 306, 623
Bsp1720I	GCTNAGC	1 cut(s)	375
BspACI	CCGC	1 cut(s)	525
BspANI	GGCC	2 cut(s)	329, 528
BspCNI	CTCAG	2 cut(s)	31, 367
BspFNI	CGCG	1 cut(s)	525
BspHI	TCATGA	1 cut(s)	429
BspLI	GGNNCC	1 cut(s)	136
BspPI	GGATC	1 cut(s)	631
BspQI	GCTCTTC	1 cut(s)	82
BsrDI	GCAATG	1 cut(s)	684
BssMI	GATC	3 cut(s)	274, 306, 623
BssNI	GRCGYC	1 cut(s)	198
Bst2UI	CCWGG	1 cut(s)	720
Bst4CI	ACNGT	1 cut(s)	128
Bst6I	CTCTTC	4 cut(s)	18, 82, 106, 154
BstACI	GRCGYC	1 cut(s)	198
BstDEI	CTNAG	3 cut(s)	18, 375, 576
BstF5I	GGATG	2 cut(s)	668, 733
BstFNI	CGCG	1 cut(s)	525
BstKTI	GATC	3 cut(s)	277, 309, 626
BstMAI	GTCTC	2 cut(s)	47, 205
BstMBI	GATC	3 cut(s)	274, 306, 623
BstMCI	CGRYCG	1 cut(s)	529
BstNI	CCWGG	1 cut(s)	720
BstNSI	RCATGY	2 cut(s)	555, 574
BstSCI	CCNGG	1 cut(s)	718
BstUI	CGCG	1 cut(s)	525
BstXI	CCANNNNNNTGG	2 cut(s)	185, 744
BstZI	CGGCCG	1 cut(s)	526
BsuI	GTATCC	1 cut(s)	360
BsuRI	GGCC	2 cut(s)	329, 528
BtrI	CACGTC	1 cut(s)	94
BtsCI	GGATG	2 cut(s)	668, 733
CciI	TCATGA	1 cut(s)	429
CseI	GACGC	2 cut(s)	405, 722
Csp6I	GTAC	2 cut(s)	173, 436
CviAII	CATG	5 cut(s)	84, 266, 430, 552, 571
CviQI	GTAC	2 cut(s)	173, 436
DdeI	CTNAG	3 cut(s)	18, 375, 576
DpnI	GATC	3 cut(s)	276, 308, 625
DpnII	GATC	3 cut(s)	274, 306, 623
EaeI	YGGCCR	2 cut(s)	327, 526
EagI	CGGCCG	1 cut(s)	526
Eam1104I	CTCTTC	4 cut(s)	18, 82, 106, 154
EarI	CTCTTC	4 cut(s)	18, 82, 106, 154
EclXI	CGGCCG	1 cut(s)	526
Eco52I	CGGCCG	1 cut(s)	526
EcoRII	CCWGG	1 cut(s)	718
Esp3I	CGTCTC	1 cut(s)	205
FaeI	CATG	5 cut(s)	87, 269, 433, 555, 574
FaiI	YATR	8 cut(s)	85, 132, 267, 431, 483, 553, 572, 614
FaqI	GGGAC	1 cut(s)	408
FatI	CATG	5 cut(s)	83, 265, 429, 551, 570
Fnu4HI	GCNGC	1 cut(s)	526
FokI	GGATG	2 cut(s)	675, 720
Fsp4HI	GCNGC	1 cut(s)	526
FspBI	CTAG	2 cut(s)	500, 537
GluI	GCNGC	1 cut(s)	526
GsuI	CTGGAG	1 cut(s)	741
HaeIII	GGCC	2 cut(s)	329, 528
HapII	CCGG	2 cut(s)	302, 326
HgaI	GACGC	2 cut(s)	405, 722
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	5 cut(s)	87, 269, 433, 555, 574
HinfI	GANTC	5 cut(s)	98, 161, 426, 580, 691
HpaII	CCGG	2 cut(s)	302, 326
HphI	GGTGA	1 cut(s)	291
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	5 cut(s)	196, 598, 628, 690, 755
Hpy188III	TCNNGA	7 cut(s)	89, 158, 281, 430, 621, 643, 671
Hpy8I	GTNNAC	1 cut(s)	97
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	2 cut(s)	148, 353
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4IV	ACGT	3 cut(s)	93, 198, 415
HpyF3I	CTNAG	3 cut(s)	18, 375, 576
HpySE526I	ACGT	3 cut(s)	93, 198, 415
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	5 cut(s)	87, 269, 433, 555, 574
Kzo9I	GATC	3 cut(s)	274, 306, 623
LguI	GCTCTTC	1 cut(s)	82
LmnI	GCTCC	3 cut(s)	140, 721, 747
LweI	GCATC	2 cut(s)	14, 715
MaeI	CTAG	2 cut(s)	500, 537
MaeII	ACGT	3 cut(s)	93, 198, 415
MalI	GATC	3 cut(s)	276, 308, 625
MboI	GATC	3 cut(s)	274, 306, 623
MfeI	CAATTG	1 cut(s)	742
MluCI	AATT	3 cut(s)	220, 707, 742
MlyI	GAGTC	1 cut(s)	92
MnlI	CCTC	8 cut(s)	27, 128, 157, 356, 403, 426, 576, 598
MspI	CCGG	2 cut(s)	302, 326
MspR9I	CCNGG	1 cut(s)	720
MunI	CAATTG	1 cut(s)	742
MvaI	CCWGG	1 cut(s)	720
MvnI	CGCG	1 cut(s)	525
NdeII	GATC	3 cut(s)	274, 306, 623
NlaIII	CATG	5 cut(s)	87, 269, 433, 555, 574
NlaIV	GGNNCC	1 cut(s)	136
NspI	RCATGY	2 cut(s)	555, 574
PagI	TCATGA	1 cut(s)	429
PciI	ACATGT	2 cut(s)	551, 570
PciSI	GCTCTTC	1 cut(s)	82
PfeI	GAWTC	4 cut(s)	161, 426, 580, 691
PfoI	TCCNGGA	1 cut(s)	718
PkrI	GCNGC	1 cut(s)	527
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
PscI	ACATGT	2 cut(s)	551, 570
Psp6I	CCWGG	1 cut(s)	718
PspGI	CCWGG	1 cut(s)	718
PspN4I	GGNNCC	1 cut(s)	136
RsaI	GTAC	2 cut(s)	174, 437
RsaNI	GTAC	2 cut(s)	173, 436
SapI	GCTCTTC	1 cut(s)	82
SatI	GCNGC	1 cut(s)	526
Sau3AI	GATC	3 cut(s)	274, 306, 623
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	1 cut(s)	720
SfaNI	GCATC	2 cut(s)	14, 715
Sse9I	AATT	3 cut(s)	220, 707, 742
SsiI	CCGC	1 cut(s)	525
SspMI	CTAG	2 cut(s)	500, 537
StyD4I	CCNGG	1 cut(s)	718
TaaI	ACNGT	1 cut(s)	128
TaiI	ACGT	3 cut(s)	96, 201, 418
TaqI	TCGA	1 cut(s)	120
TasI	AATT	3 cut(s)	220, 707, 742
TauI	GCSGC	1 cut(s)	528
TfiI	GAWTC	4 cut(s)	161, 426, 580, 691
TspDTI	ATGAA	2 cut(s)	72, 254
TspGWI	ACGGA	2 cut(s)	311, 675
XapI	RAATTY	1 cut(s)	707
XceI	RCATGY	2 cut(s)	555, 574
XspI	CTAG	2 cut(s)	500, 537
ZraI	GACGTC	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.