Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0014236

Physical Location & Seq

Genomic Coordinates Reverse (-)

35476653 .. 35478200

Gene Structure 1548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1222200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCTTCCATTCCTCATCAATTCTACAATGACTATTCACTCCCTTCTCATTTTTATGGGTACCCGACTCCAGTGGTGAGTGGAGAAAATGGTTGCAGTACTGCAGTTTTAGGTGGAACAATGTGGAGTGCTAGTACTACTTGTGAAGAAAGCTTGGTACCGTTTTGTGATATTAGCAATGCTGCGGCTAATATTGAAGTGGTGTCACCAGAATCCAACATCTCTTCGTCTGTTATAGTAGCTTCGTTCCCGGAGCTACTAGGATTTTCGGAAGATATTGCTGTCCCTGGTACATATTCGGAATATGGTAATATGGGGATGCATGGAATTGCAGGGACTCCGCATTTTGGTGGAGAACTAAACCTACCTTATATGAATGATCAGTTGGGGGAGGATCATTGTACTGGACTCATGTCAGCCGATTTCAAGCCGTTTAGCCTTGCTGGCCAAGAAAATTGGGCAATTAATCAAGCGAATCAGCAGGTGCCTACAATTGAAGATCAGTCTACTATGAAGGTGGGAAGGTATTCAGAAGAAGAAAGGAAAGAACGGATTGACAGATATTTGAAGAAAAGAAACCAGAGAAACTTCAACAAAACTATTAAGTATGCTTGCCGCAAAACTCTAGCTGATAGAAGGGTCCGAGTTCGTGGGAGATTTGCAAGGAACACTGACAATCATGAGGAAATGGCACAAGAGAAGACTGAGAACAATATTCAAACCTGCAAAGATCAGCGATCAGAACTGTATTGTAGTAGCGGTACAGTCCAGATGAAATATGACGATGATGATTGGCTGCAAGAGGCTATGGCAAGTCTAATGTACTTCCCTTATGTCACAGCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0090567 GO:0104004 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

283

Amino Acids

31.61

Weight (kDa)

4.99

Isoelectric Point (pI)

56.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	181 - 223	2.6e-17	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12890
fragaria_vesca	FvH4_3g15550
malus_domestica	MD05G1222200.v1.1 MD10G1203800.v1.1
prunus_persica	Prupe.4G138100_v2.0.a1
pyrus_communis	pycom05g20490
rosa_chinensis	RchiOBHm_Chr5g0026181
rosa_laevigata	RLG00000032910
rosa_multiflora	Rmu_sc0002909.1_g000012
rosa_roxburghii	Rroxscaffold_1G00053120
rosa_rugosa	Rorug05G0091600
rosa_samantha	Rh5AG184300 Rh5BG181100 Rh5CG200100 Rh5DG182700
rosa_wichuraiana	Rw5G016680 Rw5G016700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	472
Acc36I	ACCTGC	2 cut(s)	472, 731
Acc65I	GGTACC	2 cut(s)	60, 157
AccB1I	GGYRCC	3 cut(s)	60, 157, 484
AccI	GTMKAC	1 cut(s)	506
AciI	CCGC	4 cut(s)	185, 341, 616, 759
AclWI	GGATC	1 cut(s)	402
AcoI	YGGCCR	1 cut(s)	445
AfaI	GTAC	8 cut(s)	62, 100, 136, 159, 292, 403, 763, 824
AfiI	CCNNNNNNNGG	1 cut(s)	347
AgsI	TTSAA	6 cut(s)	197, 427, 497, 568, 592, 719
AjnI	CCWGG	1 cut(s)	286
AjuI	GAANNNNNNNTTGG	2 cut(s)	368, 400
AluBI	AGCT	5 cut(s)	153, 242, 256, 629, 842
AluI	AGCT	5 cut(s)	153, 242, 256, 629, 842
AlwI	GGATC	1 cut(s)	402
AoxI	GGCC	1 cut(s)	445
ApeKI	GCWGC	2 cut(s)	182, 796
AseI	ATTAAT	1 cut(s)	465
Asp700I	GAANNNNTTC	1 cut(s)	526
Asp718I	GGTACC	2 cut(s)	60, 157
AspS9I	GGNCC	1 cut(s)	640
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	2 cut(s)	88, 198
AvaII	GGWCC	1 cut(s)	640
BalI	TGGCCA	1 cut(s)	447
BanI	GGYRCC	3 cut(s)	60, 157, 484
BbsI	GAAGAC	1 cut(s)	707
BbvI	GCAGC	2 cut(s)	169, 783
BceAI	ACGGC	1 cut(s)	415
BciT130I	CCWGG	1 cut(s)	288
BclI	TGATCA	1 cut(s)	379
BcnI	CCSGG	1 cut(s)	251
BfaI	CTAG	3 cut(s)	132, 260, 626
BfmI	CTRYAG	1 cut(s)	102
BfuAI	ACCTGC	2 cut(s)	472, 731
BglI	GCCNNNNNGGC	1 cut(s)	444
BisI	GCNGC	4 cut(s)	183, 186, 616, 797
BlsI	GCNGC	4 cut(s)	184, 187, 617, 798
BmcAI	AGTACT	2 cut(s)	100, 136
Bme1390I	CCNGG	2 cut(s)	251, 288
Bme18I	GGWCC	1 cut(s)	640
BmgT120I	GGNCC	1 cut(s)	640
BmiI	GGNNCC	4 cut(s)	62, 159, 486, 641
BmrFI	CCNGG	2 cut(s)	251, 288
BmsI	GCATC	1 cut(s)	309
BoxI	GACNNNNGTC	1 cut(s)	412
BpiI	GAAGAC	1 cut(s)	707
BpmI	CTGGAG	1 cut(s)	54
BpuMI	CCSGG	1 cut(s)	251
BsaJI	CCNNGG	1 cut(s)	286
BsaXI	ACNNNNNCTCC	2 cut(s)	118, 148
Bsc4I	CCNNNNNNNGG	1 cut(s)	347
Bse1I	ACTGG	2 cut(s)	71, 409
Bse3DI	GCAATG	1 cut(s)	184
BseBI	CCWGG	1 cut(s)	288
BseDI	CCNNGG	1 cut(s)	286
BseGI	GGATG	1 cut(s)	324
BseLI	CCNNNNNNNGG	1 cut(s)	347
BseMI	GCAATG	1 cut(s)	184
BseMII	CTCAG	1 cut(s)	696
BseNI	ACTGG	2 cut(s)	71, 409
BseXI	GCAGC	2 cut(s)	169, 783
BshFI	GGCC	1 cut(s)	447
BshNI	GGYRCC	3 cut(s)	60, 157, 484
BsiSI	CCGG	1 cut(s)	251
BslFI	GGGAC	2 cut(s)	269, 349
BslI	CCNNNNNNNGG	1 cut(s)	347
BsmFI	GGGAC	2 cut(s)	269, 349
BsnI	GGCC	1 cut(s)	447
Bsp143I	GATC	5 cut(s)	379, 394, 499, 730, 737
BspACI	CCGC	4 cut(s)	185, 341, 616, 759
BspANI	GGCC	1 cut(s)	447
BspCNI	CTCAG	1 cut(s)	697
BspHI	TCATGA	1 cut(s)	679
BspLI	GGNNCC	4 cut(s)	62, 159, 486, 641
BspMAI	CTGCAG	1 cut(s)	106
BspMI	ACCTGC	2 cut(s)	472, 731
BspPI	GGATC	1 cut(s)	402
BspT107I	GGYRCC	3 cut(s)	60, 157, 484
BsrDI	GCAATG	1 cut(s)	184
BsrI	ACTGG	2 cut(s)	71, 409
BssECI	CCNNGG	1 cut(s)	286
BssMI	GATC	5 cut(s)	379, 394, 499, 730, 737
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	3 cut(s)	162, 747, 766
Bst6I	CTCTTC	1 cut(s)	229
BstC8I	GCNNGC	2 cut(s)	445, 613
BstDEI	CTNAG	1 cut(s)	705
BstF5I	GGATG	1 cut(s)	324
BstKTI	GATC	5 cut(s)	382, 397, 502, 733, 740
BstMBI	GATC	5 cut(s)	379, 394, 499, 730, 737
BstMWI	GCNNNNNNNGC	1 cut(s)	444
BstNI	CCWGG	1 cut(s)	288
BstPAI	GACNNNNGTC	1 cut(s)	412
BstSCI	CCNGG	2 cut(s)	249, 286
BstSFI	CTRYAG	1 cut(s)	102
BstV1I	GCAGC	2 cut(s)	169, 783
BstV2I	GAAGAC	1 cut(s)	707
BsuRI	GGCC	1 cut(s)	447
BtsCI	GGATG	1 cut(s)	324
BtsIMutI	CAGTG	2 cut(s)	78, 669
BveI	ACCTGC	2 cut(s)	472, 731
Cac8I	GCNNGC	2 cut(s)	445, 613
CciI	TCATGA	1 cut(s)	679
Cfr13I	GGNCC	1 cut(s)	640
Csp6I	GTAC	8 cut(s)	61, 99, 135, 158, 291, 402, 762, 823
CviAII	CATG	3 cut(s)	323, 412, 680
CviQI	GTAC	8 cut(s)	61, 99, 135, 158, 291, 402, 762, 823
DdeI	CTNAG	1 cut(s)	705
DpnI	GATC	5 cut(s)	381, 396, 501, 732, 739
DpnII	GATC	5 cut(s)	379, 394, 499, 730, 737
EaeI	YGGCCR	1 cut(s)	445
Eam1104I	CTCTTC	1 cut(s)	229
EarI	CTCTTC	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	640
EcoRII	CCWGG	1 cut(s)	286
EcoT22I	ATGCAT	1 cut(s)	324
FaeI	CATG	3 cut(s)	326, 415, 683
FaqI	GGGAC	2 cut(s)	269, 349
FatI	CATG	3 cut(s)	322, 411, 679
FbaI	TGATCA	1 cut(s)	379
FblI	GTMKAC	1 cut(s)	506
Fnu4HI	GCNGC	4 cut(s)	183, 186, 616, 797
FokI	GGATG	1 cut(s)	331
Fsp4HI	GCNGC	4 cut(s)	183, 186, 616, 797
FspBI	CTAG	3 cut(s)	132, 260, 626
GluI	GCNGC	4 cut(s)	183, 186, 616, 797
GsuI	CTGGAG	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	447
HapII	CCGG	1 cut(s)	251
Hin1II	CATG	3 cut(s)	326, 415, 683
HindIII	AAGCTT	1 cut(s)	151
HinfI	GANTC	5 cut(s)	67, 212, 337, 408, 475
HpaII	CCGG	1 cut(s)	251
HphI	GGTGA	2 cut(s)	88, 198
Hpy166II	GTNNAC	1 cut(s)	507
Hpy188I	TCNGA	5 cut(s)	271, 301, 532, 644, 742
Hpy188III	TCNNGA	2 cut(s)	680, 769
Hpy8I	GTNNAC	1 cut(s)	507
HpyAV	CCTTC	4 cut(s)	54, 508, 516, 630
HpyCH4III	ACNGT	3 cut(s)	162, 747, 766
HpyCH4V	TGCA	7 cut(s)	96, 104, 322, 332, 662, 726, 799
HpyF10VI	GCNNNNNNNGC	1 cut(s)	444
HpyF3I	CTNAG	1 cut(s)	705
Hsp92II	CATG	3 cut(s)	326, 415, 683
KpnI	GGTACC	2 cut(s)	64, 161
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	5 cut(s)	379, 394, 499, 730, 737
LmnI	GCTCC	1 cut(s)	253
Lsp1109I	GCAGC	2 cut(s)	169, 783
LweI	GCATC	1 cut(s)	309
MaeI	CTAG	3 cut(s)	132, 260, 626
MaeIII	GTNAC	2 cut(s)	204, 835
MalI	GATC	5 cut(s)	381, 396, 501, 732, 739
MboI	GATC	5 cut(s)	379, 394, 499, 730, 737
MboII	GAAGA	8 cut(s)	158, 216, 284, 509, 545, 548, 580, 712
MfeI	CAATTG	1 cut(s)	492
MlsI	TGGCCA	1 cut(s)	447
MluCI	AATT	5 cut(s)	20, 327, 454, 462, 492
MluNI	TGGCCA	1 cut(s)	447
MlyI	GAGTC	3 cut(s)	61, 331, 402
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	4 cut(s)	24, 385, 676, 796
Mox20I	TGGCCA	1 cut(s)	447
Mph1103I	ATGCAT	1 cut(s)	324
MroXI	GAANNNNTTC	1 cut(s)	526
MscI	TGGCCA	1 cut(s)	447
MseI	TTAA	2 cut(s)	465, 603
MslI	CAYNNNNRTG	2 cut(s)	54, 348
Msp20I	TGGCCA	1 cut(s)	447
MspA1I	CMGCKG	1 cut(s)	842
MspI	CCGG	1 cut(s)	251
MspR9I	CCNGG	2 cut(s)	251, 288
MunI	CAATTG	1 cut(s)	492
MvaI	CCWGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	1 cut(s)	444
NciI	CCSGG	1 cut(s)	251
NdeII	GATC	5 cut(s)	379, 394, 499, 730, 737
NlaIII	CATG	3 cut(s)	326, 415, 683
NlaIV	GGNNCC	4 cut(s)	62, 159, 486, 641
NmuCI	GTSAC	2 cut(s)	204, 835
NsiI	ATGCAT	1 cut(s)	324
PagI	TCATGA	1 cut(s)	679
PaqCI	CACCTGC	1 cut(s)	472
PdmI	GAANNNNTTC	1 cut(s)	526
PfeI	GAWTC	2 cut(s)	212, 475
PfoI	TCCNGGA	1 cut(s)	249
PkrI	GCNGC	4 cut(s)	184, 187, 617, 798
PleI	GAGTC	3 cut(s)	61, 331, 402
PpsI	GAGTC	3 cut(s)	61, 331, 402
PshAI	GACNNNNGTC	1 cut(s)	412
PshBI	ATTAAT	1 cut(s)	465
Psp6I	CCWGG	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	286
PspN4I	GGNNCC	4 cut(s)	62, 159, 486, 641
PspPI	GGNCC	1 cut(s)	640
PsrI	GAACNNNNNNTAC	2 cut(s)	348, 380
PstI	CTGCAG	1 cut(s)	106
PvuII	CAGCTG	1 cut(s)	842
RsaI	GTAC	8 cut(s)	62, 100, 136, 159, 292, 403, 763, 824
RsaNI	GTAC	8 cut(s)	61, 99, 135, 158, 291, 402, 762, 823
RseI	CAYNNNNRTG	2 cut(s)	54, 348
SaqAI	TTAA	2 cut(s)	465, 603
SatI	GCNGC	4 cut(s)	183, 186, 616, 797
Sau3AI	GATC	5 cut(s)	379, 394, 499, 730, 737
Sau96I	GGNCC	1 cut(s)	640
ScaI	AGTACT	2 cut(s)	100, 136
SchI	GAGTC	3 cut(s)	61, 331, 402
ScrFI	CCNGG	2 cut(s)	251, 288
SfaNI	GCATC	1 cut(s)	309
SfcI	CTRYAG	1 cut(s)	102
SinI	GGWCC	1 cut(s)	640
SmiMI	CAYNNNNRTG	2 cut(s)	54, 348
Sse9I	AATT	5 cut(s)	20, 327, 454, 462, 492
SsiI	CCGC	4 cut(s)	185, 341, 616, 759
SspI	AATATT	2 cut(s)	193, 715
SspMI	CTAG	3 cut(s)	132, 260, 626
StyD4I	CCNGG	2 cut(s)	249, 286
TaaI	ACNGT	3 cut(s)	162, 747, 766
TasI	AATT	5 cut(s)	20, 327, 454, 462, 492
TatI	WGTACW	4 cut(s)	98, 134, 401, 822
TauI	GCSGC	2 cut(s)	188, 618
TfiI	GAWTC	2 cut(s)	212, 475
Tru1I	TTAA	2 cut(s)	465, 603
Tru9I	TTAA	2 cut(s)	465, 603
TscAI	CASTG	2 cut(s)	78, 676
TseFI	GTSAC	2 cut(s)	204, 835
TseI	GCWGC	2 cut(s)	182, 796
Tsp45I	GTSAC	2 cut(s)	204, 835
TspDTI	ATGAA	3 cut(s)	389, 527, 788
TspGWI	ACGGA	1 cut(s)	565
TspRI	CASTG	2 cut(s)	78, 676
VpaK11BI	GGWCC	1 cut(s)	640
VspI	ATTAAT	1 cut(s)	465
XmiI	GTMKAC	1 cut(s)	506
XmnI	GAANNNNTTC	1 cut(s)	526
XspI	CTAG	3 cut(s)	132, 260, 626
ZrmI	AGTACT	2 cut(s)	100, 136
Zsp2I	ATGCAT	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.