Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0014236

Physical Location & Seq

Genomic Coordinates Reverse (-)

30283788 .. 30286122

Gene Structure 2335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1203800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCTTCCATTCCTCATCAATTCTACAATGACCATTCACTCCCTTCTGATTTTTACTGGTACCCAATTCCAGTGGTGAACGGAGAAAATGGTTGCAGTACTGCAGTTTTAGGTGGAACAGTGTGGAGTGCTAGTACTAATTGTGAAGAAAGCTTGGTACCGTTTTGTGATAGTAGCAATGCTGCGATTAATTTTGATGTGGTATCACCAGAATCCGACATCTCTTCGTCTGTTATGGCAGCTTCGTTCCAAGAGCTACAAGGATTTTCGGAAGATATTGCTGTCCCTGGTACATATTCGGAATATGGTAATATGGGGTTGCATGTAATTGGAGGGACTCCCAATTTTGGTGGAGAATTAAACCTTCCTTATATCTGTGAGCAGTTCGGGGAGGATAGTTTTACTGGATTCATGTCATCCGATTTCAAGCCGTTTAGCTTTGCTGGTCAAGAAAATTGGGCAATTAATCAAGACAATCAGCAGGTGCCTACAGTTGAAGATCAGTCCACTATGAAGGTGGGAAGGTATTCAGAAGAAGAAAGGAAAGAAAGGATTGACAGATATTTAAAGAAAAGAAACCAAAGGAACTTCAACAAAACTATTAAGTACGCTTGTCGCAAAACCCTAGCTGATAGAAGGGTCCGAGTTCGAGGGAGATTTGCAAGGAACACTGATCATCATGAGGAAATAGCACAGAAAAAGACTCAGAGCAATATACAAACTTGCAAAGATCAGCGATCAGAACCGTTCTGTAGTAGTGGTGCCGTCCAGAAATATGACGAAGATGATTGGCTGCAAGAGGCTGTGGCAAGTCTAATGTACTTCCCTTATGTCACTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0090567 GO:0104004 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

281

Amino Acids

31.6

Weight (kDa)

4.92

Isoelectric Point (pI)

53.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	181 - 223	2.6e-17	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12890
fragaria_vesca	FvH4_3g15550
malus_domestica	MD05G1222200.v1.1 MD10G1203800.v1.1
prunus_persica	Prupe.4G138100_v2.0.a1
pyrus_communis	pycom05g20490
rosa_chinensis	RchiOBHm_Chr5g0026181
rosa_laevigata	RLG00000032910
rosa_multiflora	Rmu_sc0002909.1_g000012
rosa_roxburghii	Rroxscaffold_1G00053120
rosa_rugosa	Rorug05G0091600
rosa_samantha	Rh5AG184300 Rh5BG181100 Rh5CG200100 Rh5DG182700
rosa_wichuraiana	Rw5G016680 Rw5G016700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	472
Acc36I	ACCTGC	1 cut(s)	472
Acc65I	GGTACC	2 cut(s)	60, 157
AccB1I	GGYRCC	4 cut(s)	60, 157, 484, 761
AfaI	GTAC	7 cut(s)	62, 100, 136, 159, 292, 608, 821
AfiI	CCNNNNNNNGG	1 cut(s)	347
AgsI	TTSAA	3 cut(s)	427, 497, 592
AjnI	CCWGG	1 cut(s)	286
AluBI	AGCT	5 cut(s)	153, 242, 256, 438, 629
AluI	AGCT	5 cut(s)	153, 242, 256, 438, 629
ApeKI	GCWGC	3 cut(s)	182, 239, 793
AseI	ATTAAT	2 cut(s)	189, 465
Asp700I	GAANNNNTTC	1 cut(s)	526
Asp718I	GGTACC	2 cut(s)	60, 157
AspS9I	GGNCC	1 cut(s)	640
AsuHPI	GGTGA	2 cut(s)	88, 198
AvaII	GGWCC	1 cut(s)	640
BanI	GGYRCC	4 cut(s)	60, 157, 484, 761
BbvI	GCAGC	3 cut(s)	169, 251, 780
BceAI	ACGGC	2 cut(s)	415, 749
BciT130I	CCWGG	1 cut(s)	288
BclI	TGATCA	1 cut(s)	673
BfaI	CTAG	2 cut(s)	132, 626
BfmI	CTRYAG	3 cut(s)	102, 489, 751
BfuAI	ACCTGC	1 cut(s)	472
BisI	GCNGC	3 cut(s)	183, 240, 794
BlsI	GCNGC	3 cut(s)	184, 241, 795
BmcAI	AGTACT	2 cut(s)	100, 136
Bme1390I	CCNGG	1 cut(s)	288
Bme18I	GGWCC	1 cut(s)	640
BmgT120I	GGNCC	1 cut(s)	640
BmiI	GGNNCC	5 cut(s)	62, 159, 486, 641, 763
BmrFI	CCNGG	1 cut(s)	288
BsaJI	CCNNGG	1 cut(s)	286
BsaXI	ACNNNNNCTCC	2 cut(s)	118, 148
Bsc4I	CCNNNNNNNGG	1 cut(s)	347
Bse1I	ACTGG	4 cut(s)	62, 71, 409, 841
Bse3DI	GCAATG	1 cut(s)	184
BseBI	CCWGG	1 cut(s)	288
BseDI	CCNNGG	1 cut(s)	286
BseGI	GGATG	1 cut(s)	416
BseLI	CCNNNNNNNGG	1 cut(s)	347
BseMI	GCAATG	1 cut(s)	184
BseMII	CTCAG	1 cut(s)	719
BseNI	ACTGG	4 cut(s)	62, 71, 409, 841
BseXI	GCAGC	3 cut(s)	169, 251, 780
BshNI	GGYRCC	4 cut(s)	60, 157, 484, 761
BslFI	GGGAC	2 cut(s)	269, 349
BslI	CCNNNNNNNGG	1 cut(s)	347
BsmFI	GGGAC	2 cut(s)	269, 349
Bsp143I	GATC	4 cut(s)	499, 673, 730, 737
BspCNI	CTCAG	1 cut(s)	718
BspHI	TCATGA	1 cut(s)	679
BspLI	GGNNCC	5 cut(s)	62, 159, 486, 641, 763
BspMAI	CTGCAG	1 cut(s)	106
BspMI	ACCTGC	1 cut(s)	472
BspT107I	GGYRCC	4 cut(s)	60, 157, 484, 761
BsrDI	GCAATG	1 cut(s)	184
BsrI	ACTGG	4 cut(s)	62, 71, 409, 841
BssECI	CCNNGG	1 cut(s)	286
BssMI	GATC	4 cut(s)	499, 673, 730, 737
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	4 cut(s)	121, 162, 493, 747
Bst6I	CTCTTC	1 cut(s)	229
BstDEI	CTNAG	1 cut(s)	705
BstF5I	GGATG	1 cut(s)	416
BstKTI	GATC	4 cut(s)	502, 676, 733, 740
BstMBI	GATC	4 cut(s)	499, 673, 730, 737
BstNI	CCWGG	1 cut(s)	288
BstNSI	RCATGY	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	286
BstSFI	CTRYAG	3 cut(s)	102, 489, 751
BstV1I	GCAGC	3 cut(s)	169, 251, 780
BtsCI	GGATG	1 cut(s)	416
BtsIMutI	CAGTG	4 cut(s)	78, 126, 669, 834
BveI	ACCTGC	1 cut(s)	472
CciI	TCATGA	1 cut(s)	679
Cfr13I	GGNCC	1 cut(s)	640
Csp6I	GTAC	7 cut(s)	61, 99, 135, 158, 291, 607, 820
CspCI	CAANNNNNGTGG	4 cut(s)	54, 89, 331, 366
CviAII	CATG	3 cut(s)	323, 412, 680
CviJI	RGCY	9 cut(s)	5, 153, 242, 256, 430, 438, 629, 793, 803
CviKI_1	RGCY	9 cut(s)	5, 153, 242, 256, 430, 438, 629, 793, 803
CviQI	GTAC	7 cut(s)	61, 99, 135, 158, 291, 607, 820
DdeI	CTNAG	1 cut(s)	705
DpnI	GATC	4 cut(s)	501, 675, 732, 739
DpnII	GATC	4 cut(s)	499, 673, 730, 737
DraI	TTTAAA	1 cut(s)	567
Eam1104I	CTCTTC	1 cut(s)	229
EarI	CTCTTC	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	640
EcoRII	CCWGG	1 cut(s)	286
FaeI	CATG	3 cut(s)	326, 415, 683
FaqI	GGGAC	2 cut(s)	269, 349
FatI	CATG	3 cut(s)	322, 411, 679
FbaI	TGATCA	1 cut(s)	673
Fnu4HI	GCNGC	3 cut(s)	183, 240, 794
FokI	GGATG	1 cut(s)	403
Fsp4HI	GCNGC	3 cut(s)	183, 240, 794
FspBI	CTAG	2 cut(s)	132, 626
GluI	GCNGC	3 cut(s)	183, 240, 794
Hin1II	CATG	3 cut(s)	326, 415, 683
HindIII	AAGCTT	1 cut(s)	151
HinfI	GANTC	4 cut(s)	212, 337, 408, 703
HphI	GGTGA	2 cut(s)	88, 198
Hpy166II	GTNNAC	2 cut(s)	79, 507
Hpy188I	TCNGA	9 cut(s)	49, 217, 271, 301, 421, 532, 644, 708, 742
Hpy188III	TCNNGA	4 cut(s)	449, 470, 680, 769
Hpy8I	GTNNAC	2 cut(s)	79, 507
HpyAV	CCTTC	5 cut(s)	54, 374, 508, 516, 630
HpyCH4III	ACNGT	4 cut(s)	121, 162, 493, 747
HpyCH4V	TGCA	6 cut(s)	96, 104, 322, 662, 726, 796
HpyF3I	CTNAG	1 cut(s)	705
Hsp92II	CATG	3 cut(s)	326, 415, 683
KpnI	GGTACC	2 cut(s)	64, 161
Ksp22I	TGATCA	1 cut(s)	673
Kzo9I	GATC	4 cut(s)	499, 673, 730, 737
Lsp1109I	GCAGC	3 cut(s)	169, 251, 780
MaeI	CTAG	2 cut(s)	132, 626
MaeIII	GTNAC	1 cut(s)	832
MalI	GATC	4 cut(s)	501, 675, 732, 739
MboI	GATC	4 cut(s)	499, 673, 730, 737
MboII	GAAGA	7 cut(s)	158, 216, 284, 509, 545, 548, 794
MluCI	AATT	9 cut(s)	20, 66, 139, 190, 327, 343, 356, 454, 462
MlyI	GAGTC	2 cut(s)	331, 697
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	6 cut(s)	24, 326, 385, 644, 676, 793
MroXI	GAANNNNTTC	1 cut(s)	526
MseI	TTAA	5 cut(s)	189, 359, 465, 566, 603
MspR9I	CCNGG	1 cut(s)	288
MvaI	CCWGG	1 cut(s)	288
NdeII	GATC	4 cut(s)	499, 673, 730, 737
NlaIII	CATG	3 cut(s)	326, 415, 683
NlaIV	GGNNCC	5 cut(s)	62, 159, 486, 641, 763
NmuCI	GTSAC	1 cut(s)	832
NspI	RCATGY	1 cut(s)	326
PagI	TCATGA	1 cut(s)	679
PaqCI	CACCTGC	1 cut(s)	472
PdmI	GAANNNNTTC	1 cut(s)	526
PfeI	GAWTC	2 cut(s)	212, 408
PkrI	GCNGC	3 cut(s)	184, 241, 795
PleI	GAGTC	2 cut(s)	331, 697
PpsI	GAGTC	2 cut(s)	331, 697
PshBI	ATTAAT	2 cut(s)	189, 465
Psp6I	CCWGG	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	286
PspN4I	GGNNCC	5 cut(s)	62, 159, 486, 641, 763
PspPI	GGNCC	1 cut(s)	640
PstI	CTGCAG	1 cut(s)	106
RsaI	GTAC	7 cut(s)	62, 100, 136, 159, 292, 608, 821
RsaNI	GTAC	7 cut(s)	61, 99, 135, 158, 291, 607, 820
SaqAI	TTAA	5 cut(s)	189, 359, 465, 566, 603
SatI	GCNGC	3 cut(s)	183, 240, 794
Sau3AI	GATC	4 cut(s)	499, 673, 730, 737
Sau96I	GGNCC	1 cut(s)	640
ScaI	AGTACT	2 cut(s)	100, 136
SchI	GAGTC	2 cut(s)	331, 697
ScrFI	CCNGG	1 cut(s)	288
SfcI	CTRYAG	3 cut(s)	102, 489, 751
SinI	GGWCC	1 cut(s)	640
Sse9I	AATT	9 cut(s)	20, 66, 139, 190, 327, 343, 356, 454, 462
SspMI	CTAG	2 cut(s)	132, 626
StyD4I	CCNGG	1 cut(s)	286
TaaI	ACNGT	4 cut(s)	121, 162, 493, 747
TaqI	TCGA	1 cut(s)	649
TasI	AATT	9 cut(s)	20, 66, 139, 190, 327, 343, 356, 454, 462
TatI	WGTACW	3 cut(s)	98, 134, 819
TfiI	GAWTC	2 cut(s)	212, 408
Tru1I	TTAA	5 cut(s)	189, 359, 465, 566, 603
Tru9I	TTAA	5 cut(s)	189, 359, 465, 566, 603
TscAI	CASTG	4 cut(s)	78, 126, 676, 841
TseFI	GTSAC	1 cut(s)	832
TseI	GCWGC	3 cut(s)	182, 239, 793
Tsp45I	GTSAC	1 cut(s)	832
TspDTI	ATGAA	2 cut(s)	400, 527
TspGWI	ACGGA	1 cut(s)	96
TspRI	CASTG	4 cut(s)	78, 126, 676, 841
VpaK11BI	GGWCC	1 cut(s)	640
VspI	ATTAAT	2 cut(s)	189, 465
XceI	RCATGY	1 cut(s)	326
XcmI	CCANNNNNNNNNTGG	1 cut(s)	514
XmnI	GAANNNNTTC	1 cut(s)	526
XspI	CTAG	2 cut(s)	132, 626
ZrmI	AGTACT	2 cut(s)	100, 136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.