Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0014236

Physical Location & Seq

Genomic Coordinates Forward (+)

9734608 .. 9736580

Gene Structure 1973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g15550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGATTCTCAGTTCTATAATGACTACTCTCTCCCTTCTGAATTATGTGGCTACCCAACTCCGGCTGTGGCAACAGGTTGCGGCGGTCCGGTTATGAGTGGAGCAATGTGGGCTTCTAGTGGTAGTGAAGAAAATAACCTGGTACCAATGTTCTGTGAGAACAATGGTGCAGCTAGTTTTGATGTCGTGTCACCGGAGTCTGACATCTCGTCGTGTACCATGGGAGCGGCAGCAACGTTCCCGGAGTTACTTGGGTTCTCGGAAGACGCTGTGGCGCCTGTTTCTTTTTCAGAGTATAGTCATCTGGGGTTGAATGCAATTTCAGGGCTTAATCACAGCTTTGGTGGTGATTCTTACCTCCAACTATACAATAAAATGAATAAAGGCAATAATCAGTTTGGGGATCAGGAATGCTGTACTGGATTCATGCCTGCTAATTCTAAGCCTCTTGGCCTAGCTGTTCAAGAAATTTGGGGATTCAATCAAGGAAACCAGGTGCCTGCAATGGAAGATCAGTCAAATATGAAGGTGGGACGGTATTCAGAAGAAGAGAGGAAAGAAAGGATTGAGAGGTATTTGAAGAAAAGAAACCAAAGGAACTTCAACAAAACCATTAAGTATGCTTGTCGCAAAACCCTAGCTGATAAAAGAGTCCGAGTTCGTGGGAGATTTGCAAGGAACAGTAATGAACAGCTAACTAATGAAGATTCAACTCATCAAGAAATGGCACCAAAAAAGATTGACACCGATTGCAGTAATCATGCTTGTAATGACAGATCTGAACTCATGTATTGTAGCGGCGGTGCTGTCCAGATCAAATATGACGAGGAGGACTGGCTGCAAGAAGCTATGGCAAGTCTGGTGTACTTACCTTATGTCACTGCTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0090567 GO:0104004 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

297

Amino Acids

32.75

Weight (kDa)

4.94

Isoelectric Point (pI)

60.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	185 - 227	1.1e-17	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12890
fragaria_vesca	FvH4_3g15550
malus_domestica	MD05G1222200.v1.1 MD10G1203800.v1.1
prunus_persica	Prupe.4G138100_v2.0.a1
pyrus_communis	pycom05g20490
rosa_chinensis	RchiOBHm_Chr5g0026181
rosa_laevigata	RLG00000032910
rosa_multiflora	Rmu_sc0002909.1_g000012
rosa_roxburghii	Rroxscaffold_1G00053120
rosa_rugosa	Rorug05G0091600
rosa_samantha	Rh5AG184300 Rh5BG181100 Rh5CG200100 Rh5DG182700
rosa_wichuraiana	Rw5G016680 Rw5G016700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	142
AccB1I	GGYRCC	4 cut(s)	142, 274, 496, 727
AccBSI	CCGCTC	1 cut(s)	227
AciI	CCGC	5 cut(s)	81, 84, 227, 798, 801
AclI	AACGTT	1 cut(s)	236
AclWI	GGATC	1 cut(s)	411
AcsI	RAATTY	1 cut(s)	468
AcyI	GRCGYC	1 cut(s)	275
AfaI	GTAC	4 cut(s)	144, 217, 418, 866
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	6 cut(s)	313, 464, 481, 580, 604, 711
AhdI	GACNNNNNGTC	1 cut(s)	208
AjnI	CCWGG	2 cut(s)	138, 492
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	6 cut(s)	173, 339, 458, 641, 694, 848
AluI	AGCT	6 cut(s)	173, 339, 458, 641, 694, 848
AlwI	GGATC	1 cut(s)	411
AoxI	GGCC	1 cut(s)	451
ApeKI	GCWGC	3 cut(s)	170, 230, 838
ApoI	RAATTY	1 cut(s)	468
Asp718I	GGTACC	1 cut(s)	142
AspLEI	GCGC	1 cut(s)	277
AspS9I	GGNCC	1 cut(s)	86
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	2 cut(s)	183, 359
AvaII	GGWCC	1 cut(s)	86
BaeI	ACNNNNGTAYC	2 cut(s)	134, 167
BanI	GGYRCC	4 cut(s)	142, 274, 496, 727
BbsI	GAAGAC	1 cut(s)	270
BbvI	GCAGC	3 cut(s)	182, 242, 825
BciT130I	CCWGG	2 cut(s)	140, 494
BcnI	CCSGG	1 cut(s)	242
BfaI	CTAG	4 cut(s)	117, 174, 455, 638
BfoI	RGCGCY	1 cut(s)	278
BglII	AGATCT	1 cut(s)	776
BisI	GCNGC	6 cut(s)	82, 171, 228, 231, 799, 839
BlsI	GCNGC	6 cut(s)	83, 172, 229, 232, 800, 840
Bme1390I	CCNGG	3 cut(s)	140, 242, 494
Bme18I	GGWCC	1 cut(s)	86
BmeRI	GACNNNNNGTC	1 cut(s)	208
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	4 cut(s)	144, 276, 498, 729
BmrFI	CCNGG	3 cut(s)	140, 242, 494
BpiI	GAAGAC	1 cut(s)	270
BpuMI	CCSGG	1 cut(s)	242
BsaHI	GRCGYC	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	219
BsaWI	WCCGGW	2 cut(s)	88, 193
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse1I	ACTGG	2 cut(s)	424, 839
Bse3DI	GCAATG	2 cut(s)	111, 510
BseBI	CCWGG	2 cut(s)	140, 494
BseDI	CCNNGG	1 cut(s)	219
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMI	GCAATG	2 cut(s)	111, 510
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	2 cut(s)	424, 839
BseRI	GAGGAG	1 cut(s)	842
BseXI	GCAGC	3 cut(s)	182, 242, 825
BsgI	GTGCAG	1 cut(s)	189
BshFI	GGCC	1 cut(s)	453
BshNI	GGYRCC	4 cut(s)	142, 274, 496, 727
BsiSI	CCGG	4 cut(s)	62, 89, 194, 242
BslFI	GGGAC	1 cut(s)	546
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmFI	GGGAC	1 cut(s)	546
BsmI	GAATGC	2 cut(s)	319, 416
BsnI	GGCC	1 cut(s)	453
Bsp143I	GATC	4 cut(s)	403, 511, 776, 813
Bsp19I	CCATGG	1 cut(s)	219
BspACI	CCGC	5 cut(s)	81, 84, 227, 798, 801
BspANI	GGCC	1 cut(s)	453
BspCNI	CTCAG	1 cut(s)	22
BspLI	GGNNCC	4 cut(s)	144, 276, 498, 729
BspPI	GGATC	1 cut(s)	411
BspT107I	GGYRCC	4 cut(s)	142, 274, 496, 727
BsrBI	CCGCTC	1 cut(s)	227
BsrDI	GCAATG	2 cut(s)	111, 510
BsrI	ACTGG	2 cut(s)	424, 839
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	4 cut(s)	403, 511, 776, 813
BssNI	GRCGYC	1 cut(s)	275
BssT1I	CCWWGG	1 cut(s)	219
Bst2UI	CCWGG	2 cut(s)	140, 494
Bst4CI	ACNGT	2 cut(s)	537, 683
Bst6I	CTCTTC	1 cut(s)	543
BstACI	GRCGYC	1 cut(s)	275
BstC8I	GCNNGC	3 cut(s)	432, 501, 886
BstDEI	CTNAG	2 cut(s)	9, 441
BstDSI	CCRYGG	1 cut(s)	219
BstH2I	RGCGCY	1 cut(s)	278
BstHHI	GCGC	1 cut(s)	277
BstKTI	GATC	4 cut(s)	406, 514, 779, 816
BstMBI	GATC	4 cut(s)	403, 511, 776, 813
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstNI	CCWGG	2 cut(s)	140, 494
BstSCI	CCNGG	3 cut(s)	138, 240, 492
BstV1I	GCAGC	3 cut(s)	182, 242, 825
BstV2I	GAAGAC	1 cut(s)	270
BstX2I	RGATCY	1 cut(s)	776
BstYI	RGATCY	1 cut(s)	776
BsuRI	GGCC	1 cut(s)	453
BtgI	CCRYGG	1 cut(s)	219
BtsI	GCAGTG	1 cut(s)	879
BtsIMutI	CAGTG	1 cut(s)	879
Cac8I	GCNNGC	3 cut(s)	432, 501, 886
CfoI	GCGC	1 cut(s)	277
Cfr13I	GGNCC	1 cut(s)	86
CpoI	CGGWCCG	1 cut(s)	86
CseI	GACGC	1 cut(s)	275
CsiI	ACCWGGT	2 cut(s)	138, 492
Csp6I	GTAC	4 cut(s)	143, 216, 417, 865
CspI	CGGWCCG	1 cut(s)	86
CviAII	CATG	4 cut(s)	220, 427, 761, 787
CviQI	GTAC	4 cut(s)	143, 216, 417, 865
DdeI	CTNAG	2 cut(s)	9, 441
DinI	GGCGCC	1 cut(s)	276
DpnI	GATC	4 cut(s)	405, 513, 778, 815
DpnII	GATC	4 cut(s)	403, 511, 776, 813
DriI	GACNNNNNGTC	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	543
Eam1105I	GACNNNNNGTC	1 cut(s)	208
EarI	CTCTTC	1 cut(s)	543
Eco130I	CCWWGG	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	86
EcoRII	CCWGG	2 cut(s)	138, 492
EcoT14I	CCWWGG	1 cut(s)	219
EgeI	GGCGCC	1 cut(s)	276
EheI	GGCGCC	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	4 cut(s)	223, 430, 764, 790
FaqI	GGGAC	1 cut(s)	546
FatI	CATG	4 cut(s)	219, 426, 760, 786
Fnu4HI	GCNGC	6 cut(s)	82, 171, 228, 231, 799, 839
Fsp4HI	GCNGC	6 cut(s)	82, 171, 228, 231, 799, 839
FspBI	CTAG	4 cut(s)	117, 174, 455, 638
GlaI	GCGC	1 cut(s)	276
GluI	GCNGC	6 cut(s)	82, 171, 228, 231, 799, 839
HaeII	RGCGCY	1 cut(s)	278
HaeIII	GGCC	1 cut(s)	453
HapII	CCGG	4 cut(s)	62, 89, 194, 242
HgaI	GACGC	1 cut(s)	275
HhaI	GCGC	1 cut(s)	277
Hin1I	GRCGYC	1 cut(s)	275
Hin1II	CATG	4 cut(s)	223, 430, 764, 790
Hin6I	GCGC	1 cut(s)	275
HinP1I	GCGC	1 cut(s)	275
HinfI	GANTC	7 cut(s)	5, 197, 350, 423, 477, 651, 707
HpaII	CCGG	4 cut(s)	62, 89, 194, 242
HphI	GGTGA	2 cut(s)	183, 359
Hpy166II	GTNNAC	2 cut(s)	216, 865
Hpy188I	TCNGA	7 cut(s)	40, 202, 262, 292, 544, 656, 781
Hpy188III	TCNNGA	4 cut(s)	407, 464, 719, 811
Hpy8I	GTNNAC	2 cut(s)	216, 865
Hpy99I	CGWCG	1 cut(s)	214
HpyAV	CCTTC	2 cut(s)	45, 520
HpyCH4III	ACNGT	2 cut(s)	537, 683
HpyCH4IV	ACGT	1 cut(s)	236
HpyCH4V	TGCA	6 cut(s)	170, 317, 503, 674, 753, 841
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	2 cut(s)	9, 441
HpySE526I	ACGT	1 cut(s)	236
Hsp92I	GRCGYC	1 cut(s)	275
Hsp92II	CATG	4 cut(s)	223, 430, 764, 790
HspAI	GCGC	1 cut(s)	275
KasI	GGCGCC	1 cut(s)	274
KpnI	GGTACC	1 cut(s)	146
Kzo9I	GATC	4 cut(s)	403, 511, 776, 813
LmnI	GCTCC	2 cut(s)	101, 224
Lsp1109I	GCAGC	3 cut(s)	182, 242, 825
MabI	ACCWGGT	2 cut(s)	138, 492
MaeI	CTAG	4 cut(s)	117, 174, 455, 638
MaeII	ACGT	1 cut(s)	236
MaeIII	GTNAC	3 cut(s)	189, 246, 877
MalI	GATC	4 cut(s)	405, 513, 778, 815
MbiI	CCGCTC	1 cut(s)	227
MboI	GATC	4 cut(s)	403, 511, 776, 813
MboII	GAAGA	7 cut(s)	140, 275, 521, 557, 560, 592, 716
MflI	RGATCY	1 cut(s)	776
MluCI	AATT	4 cut(s)	41, 318, 436, 468
Mly113I	GGCGCC	1 cut(s)	275
MlyI	GAGTC	2 cut(s)	206, 660
MmeI	TCCRAC	1 cut(s)	385
MnlI	CCTC	6 cut(s)	368, 456, 546, 564, 820, 823
MseI	TTAA	2 cut(s)	330, 615
MspI	CCGG	4 cut(s)	62, 89, 194, 242
MspR9I	CCNGG	3 cut(s)	140, 242, 494
Mva1269I	GAATGC	2 cut(s)	319, 416
MvaI	CCWGG	2 cut(s)	140, 494
MwoI	GCNNNNNNNGC	1 cut(s)	110
NarI	GGCGCC	1 cut(s)	275
NciI	CCSGG	1 cut(s)	242
NcoI	CCATGG	1 cut(s)	219
NdeII	GATC	4 cut(s)	403, 511, 776, 813
NlaIII	CATG	4 cut(s)	223, 430, 764, 790
NlaIV	GGNNCC	4 cut(s)	144, 276, 498, 729
NmuCI	GTSAC	2 cut(s)	189, 877
PctI	GAATGC	2 cut(s)	319, 416
PfeI	GAWTC	5 cut(s)	5, 350, 423, 477, 707
PfoI	TCCNGGA	1 cut(s)	240
PkrI	GCNGC	6 cut(s)	83, 172, 229, 232, 800, 840
PleI	GAGTC	2 cut(s)	205, 659
PluTI	GGCGCC	1 cut(s)	278
PpsI	GAGTC	2 cut(s)	205, 659
Psp1406I	AACGTT	1 cut(s)	236
Psp6I	CCWGG	2 cut(s)	138, 492
PspGI	CCWGG	2 cut(s)	138, 492
PspN4I	GGNNCC	4 cut(s)	144, 276, 498, 729
PspPI	GGNCC	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	776
RsaI	GTAC	4 cut(s)	144, 217, 418, 866
RsaNI	GTAC	4 cut(s)	143, 216, 417, 865
Rsr2I	CGGWCCG	1 cut(s)	86
RsrII	CGGWCCG	1 cut(s)	86
SaqAI	TTAA	2 cut(s)	330, 615
SatI	GCNGC	6 cut(s)	82, 171, 228, 231, 799, 839
Sau3AI	GATC	4 cut(s)	403, 511, 776, 813
Sau96I	GGNCC	1 cut(s)	86
SchI	GAGTC	2 cut(s)	206, 660
ScrFI	CCNGG	3 cut(s)	140, 242, 494
SexAI	ACCWGGT	2 cut(s)	138, 492
SfoI	GGCGCC	1 cut(s)	276
SinI	GGWCC	1 cut(s)	86
Sse9I	AATT	4 cut(s)	41, 318, 436, 468
SsiI	CCGC	5 cut(s)	81, 84, 227, 798, 801
SspDI	GGCGCC	1 cut(s)	274
SspMI	CTAG	4 cut(s)	117, 174, 455, 638
StyD4I	CCNGG	3 cut(s)	138, 240, 492
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	2 cut(s)	537, 683
TaiI	ACGT	1 cut(s)	239
TasI	AATT	4 cut(s)	41, 318, 436, 468
TatI	WGTACW	2 cut(s)	416, 864
TauI	GCSGC	3 cut(s)	84, 230, 801
TfiI	GAWTC	5 cut(s)	5, 350, 423, 477, 707
Tru1I	TTAA	2 cut(s)	330, 615
Tru9I	TTAA	2 cut(s)	330, 615
TscAI	CASTG	1 cut(s)	886
TseFI	GTSAC	2 cut(s)	189, 877
TseI	GCWGC	3 cut(s)	170, 230, 838
Tsp45I	GTSAC	2 cut(s)	189, 877
TspDTI	ATGAA	5 cut(s)	392, 415, 539, 702, 717
TspRI	CASTG	1 cut(s)	886
VpaK11BI	GGWCC	1 cut(s)	86
XapI	RAATTY	1 cut(s)	468
XspI	CTAG	4 cut(s)	117, 174, 455, 638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.