Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0014236

Physical Location & Seq

Genomic Coordinates Forward (+)

7684509 .. 7686432

Gene Structure 1924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G138100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGATTCCCTTCCTCATCAATTCTACAATGACTATTCACTCCCTTGTGGTTTTTACGGCTACCCAACTCCGGAAATGGCCGGAGAAAATGGTTGTGGTTCGGTTTTCGGTGGAGCAATGTGGGGTGCTACTTGTGAAGAAAACTTGGTGCCATTTTGTAATGTTAGTAGTGCTGCAGTAAATTTTGATGTGATGTCACCGGAATCCGACATCTCTTCGTCTGTTATGGCGGCTTCGTTCCCGGAGCTACTTAAGATTTCGGAGGATCTTTCTGTGCCTGCTGCAGCTGCATTTTCAGATTATGGGAATATGGGGTTGCATGGACTTGCAGGGATTAATCAGAATTTTGGTGGAGAAATTAGCCAACCATATATGTGTGATCAGTTTGGGGAGGAATGTTGTACTGGTCTCAACATGTCAGATATTAAGCCGTTTGGCCTTGCTGGCCAAGAAAATTGGGGAATTCAAGGGAACCAGCAGGTGCCTACAATTGATCAAGATCAGTCTAATATGAAGGTGGGAAGGTATTCAGAAGAAGAAAGGAAAGAAAGGATTGGCAGATATTTGAAGAAAAGAAACCAAAGGAACTTCAACAAAACCATTAAGTATGCTTGTCGCAAAACCCTAGCTGATAGAAGGGTCCGAGTTCGTGGGAGATTTGCAAGGAACACTGAACTAAGTGATCAAGAAATAGCAGCAAAAAAGATTGACAGCAATCATACTTGCGAAGATCAGAGATCAGAAATGTGTTGTAGTAATGATGCCGTCCAGATGATGAAATATGACGAGGACGACTACTGGCTGCAAGAGGCTATGGGTCTAATGTACTTACCTTATGCCACCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0090567 GO:0104004 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

283

Amino Acids

31.51

Weight (kDa)

4.74

Isoelectric Point (pI)

53.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12890
fragaria_vesca	FvH4_3g15550
malus_domestica	MD05G1222200.v1.1 MD10G1203800.v1.1
prunus_persica	Prupe.4G138100_v2.0.a1
pyrus_communis	pycom05g20490
rosa_chinensis	RchiOBHm_Chr5g0026181
rosa_laevigata	RLG00000032910
rosa_multiflora	Rmu_sc0002909.1_g000012
rosa_roxburghii	Rroxscaffold_1G00053120
rosa_rugosa	Rorug05G0091600
rosa_samantha	Rh5AG184300 Rh5BG181100 Rh5CG200100 Rh5DG182700
rosa_wichuraiana	Rw5G016680 Rw5G016700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	469
Acc36I	ACCTGC	1 cut(s)	469
AccB1I	GGYRCC	2 cut(s)	148, 481
AccIII	TCCGGA	1 cut(s)	70
AciI	CCGC	1 cut(s)	230
AclWI	GGATC	1 cut(s)	273
AcoI	YGGCCR	2 cut(s)	78, 445
AcsI	RAATTY	3 cut(s)	181, 343, 462
AfaI	GTAC	2 cut(s)	403, 827
AfiI	CCNNNNNNNGG	1 cut(s)	70
AflII	CTTAAG	1 cut(s)	251
AflIII	ACRYGT	1 cut(s)	414
AgsI	TTSAA	3 cut(s)	467, 568, 592
AluBI	AGCT	4 cut(s)	247, 287, 629, 846
AluI	AGCT	4 cut(s)	247, 287, 629, 846
Alw26I	GTCTC	1 cut(s)	413
AlwI	GGATC	1 cut(s)	273
Aor13HI	TCCGGA	1 cut(s)	70
AoxI	GGCC	3 cut(s)	78, 436, 445
ApeKI	GCWGC	6 cut(s)	173, 281, 284, 287, 695, 802
ApoI	RAATTY	3 cut(s)	181, 343, 462
AseI	ATTAAT	1 cut(s)	336
Asp700I	GAANNNNTTC	1 cut(s)	526
AspS9I	GGNCC	1 cut(s)	640
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	1 cut(s)	189
AvaII	GGWCC	1 cut(s)	640
BalI	TGGCCA	1 cut(s)	447
BanI	GGYRCC	2 cut(s)	148, 481
BbvI	GCAGC	6 cut(s)	160, 268, 274, 296, 707, 789
BceAI	ACGGC	3 cut(s)	73, 415, 749
BclI	TGATCA	3 cut(s)	379, 493, 682
BcnI	CCSGG	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	413
BfaI	CTAG	1 cut(s)	626
BfmI	CTRYAG	2 cut(s)	174, 282
BfrI	CTTAAG	1 cut(s)	251
BfuAI	ACCTGC	1 cut(s)	469
BglI	GCCNNNNNGGC	1 cut(s)	444
BisI	GCNGC	7 cut(s)	174, 231, 282, 285, 288, 696, 803
BlsI	GCNGC	7 cut(s)	175, 232, 283, 286, 289, 697, 804
Bme1390I	CCNGG	1 cut(s)	242
Bme18I	GGWCC	1 cut(s)	640
BmgT120I	GGNCC	1 cut(s)	640
BmiI	GGNNCC	4 cut(s)	150, 473, 483, 641
BmrFI	CCNGG	1 cut(s)	242
BmsI	GCATC	1 cut(s)	751
BpuMI	CCSGG	1 cut(s)	242
BsaBI	GATNNNNATC	1 cut(s)	498
BsaI	GGTCTC	1 cut(s)	413
BsaWI	WCCGGW	2 cut(s)	70, 199
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse1I	ACTGG	2 cut(s)	409, 803
Bse3DI	GCAATG	1 cut(s)	123
Bse8I	GATNNNNATC	1 cut(s)	498
BseAI	TCCGGA	1 cut(s)	70
BseJI	GATNNNNATC	1 cut(s)	498
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseMI	GCAATG	1 cut(s)	123
BseNI	ACTGG	2 cut(s)	409, 803
BseXI	GCAGC	6 cut(s)	160, 268, 274, 296, 707, 789
BshFI	GGCC	3 cut(s)	80, 438, 447
BshNI	GGYRCC	2 cut(s)	148, 481
BsiSI	CCGG	4 cut(s)	71, 81, 200, 242
BslI	CCNNNNNNNGG	1 cut(s)	70
BsmAI	GTCTC	1 cut(s)	413
BsnI	GGCC	3 cut(s)	80, 438, 447
Bso31I	GGTCTC	1 cut(s)	413
Bsp13I	TCCGGA	1 cut(s)	70
Bsp143I	GATC	7 cut(s)	265, 379, 493, 499, 682, 730, 737
BspACI	CCGC	1 cut(s)	230
BspANI	GGCC	3 cut(s)	80, 438, 447
BspEI	TCCGGA	1 cut(s)	70
BspLI	GGNNCC	4 cut(s)	150, 473, 483, 641
BspMAI	CTGCAG	2 cut(s)	178, 286
BspMI	ACCTGC	1 cut(s)	469
BspPI	GGATC	1 cut(s)	273
BspT107I	GGYRCC	2 cut(s)	148, 481
BspTI	CTTAAG	1 cut(s)	251
BspTNI	GGTCTC	1 cut(s)	413
BsrDI	GCAATG	1 cut(s)	123
BsrI	ACTGG	2 cut(s)	409, 803
BssMI	GATC	7 cut(s)	265, 379, 493, 499, 682, 730, 737
Bst6I	CTCTTC	1 cut(s)	220
BstAFI	CTTAAG	1 cut(s)	251
BstC8I	GCNNGC	2 cut(s)	279, 445
BstDEI	CTNAG	1 cut(s)	677
BstKTI	GATC	7 cut(s)	268, 382, 496, 502, 685, 733, 740
BstMAI	GTCTC	1 cut(s)	413
BstMBI	GATC	7 cut(s)	265, 379, 493, 499, 682, 730, 737
BstMWI	GCNNNNNNNGC	2 cut(s)	287, 444
BstNSI	RCATGY	1 cut(s)	418
BstSCI	CCNGG	1 cut(s)	240
BstSFI	CTRYAG	2 cut(s)	174, 282
BstV1I	GCAGC	6 cut(s)	160, 268, 274, 296, 707, 789
BstX2I	RGATCY	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	265
BsuRI	GGCC	3 cut(s)	80, 438, 447
BtsIMutI	CAGTG	1 cut(s)	669
BveI	ACCTGC	1 cut(s)	469
Cac8I	GCNNGC	2 cut(s)	279, 445
Cfr13I	GGNCC	1 cut(s)	640
Csp6I	GTAC	2 cut(s)	402, 826
CviAII	CATG	2 cut(s)	320, 415
CviQI	GTAC	2 cut(s)	402, 826
DdeI	CTNAG	1 cut(s)	677
DpnI	GATC	7 cut(s)	267, 381, 495, 501, 684, 732, 739
DpnII	GATC	7 cut(s)	265, 379, 493, 499, 682, 730, 737
EaeI	YGGCCR	2 cut(s)	78, 445
Eam1104I	CTCTTC	1 cut(s)	220
EarI	CTCTTC	1 cut(s)	220
Eco31I	GGTCTC	1 cut(s)	413
Eco47I	GGWCC	1 cut(s)	640
EcoRI	GAATTC	1 cut(s)	462
FaeI	CATG	2 cut(s)	323, 418
FatI	CATG	2 cut(s)	319, 414
FbaI	TGATCA	3 cut(s)	379, 493, 682
Fnu4HI	GCNGC	7 cut(s)	174, 231, 282, 285, 288, 696, 803
Fsp4HI	GCNGC	7 cut(s)	174, 231, 282, 285, 288, 696, 803
FspBI	CTAG	1 cut(s)	626
GluI	GCNGC	7 cut(s)	174, 231, 282, 285, 288, 696, 803
HaeIII	GGCC	3 cut(s)	80, 438, 447
HapII	CCGG	4 cut(s)	71, 81, 200, 242
Hin1II	CATG	2 cut(s)	323, 418
HinfI	GANTC	2 cut(s)	5, 203
HpaII	CCGG	4 cut(s)	71, 81, 200, 242
HphI	GGTGA	1 cut(s)	189
Hpy188I	TCNGA	9 cut(s)	208, 262, 298, 342, 421, 532, 644, 735, 742
Hpy188III	TCNNGA	4 cut(s)	71, 497, 686, 769
HpyAV	CCTTC	4 cut(s)	20, 508, 516, 630
HpyCH4V	TGCA	7 cut(s)	176, 284, 290, 319, 329, 662, 805
HpyF10VI	GCNNNNNNNGC	2 cut(s)	287, 444
HpyF3I	CTNAG	1 cut(s)	677
Hsp92II	CATG	2 cut(s)	323, 418
Kpn2I	TCCGGA	1 cut(s)	70
Ksp22I	TGATCA	3 cut(s)	379, 493, 682
Kzo9I	GATC	7 cut(s)	265, 379, 493, 499, 682, 730, 737
LmnI	GCTCC	2 cut(s)	113, 244
Lsp1109I	GCAGC	6 cut(s)	160, 268, 274, 296, 707, 789
LweI	GCATC	1 cut(s)	751
MaeI	CTAG	1 cut(s)	626
MaeIII	GTNAC	1 cut(s)	195
MalI	GATC	7 cut(s)	267, 381, 495, 501, 684, 732, 739
MboI	GATC	7 cut(s)	265, 379, 493, 499, 682, 730, 737
MboII	GAAGA	6 cut(s)	149, 207, 545, 548, 580, 740
MfeI	CAATTG	1 cut(s)	489
MflI	RGATCY	1 cut(s)	265
MlsI	TGGCCA	1 cut(s)	447
MluCI	AATT	7 cut(s)	20, 181, 343, 357, 454, 462, 489
MluNI	TGGCCA	1 cut(s)	447
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	5 cut(s)	24, 256, 385, 781, 802
Mox20I	TGGCCA	1 cut(s)	447
MroI	TCCGGA	1 cut(s)	70
MroXI	GAANNNNTTC	1 cut(s)	526
MscI	TGGCCA	1 cut(s)	447
MseI	TTAA	4 cut(s)	252, 336, 426, 603
MslI	CAYNNNNRTG	1 cut(s)	373
Msp20I	TGGCCA	1 cut(s)	447
MspA1I	CMGCKG	2 cut(s)	287, 846
MspCI	CTTAAG	1 cut(s)	251
MspI	CCGG	4 cut(s)	71, 81, 200, 242
MspR9I	CCNGG	1 cut(s)	242
MunI	CAATTG	1 cut(s)	489
MwoI	GCNNNNNNNGC	2 cut(s)	287, 444
NciI	CCSGG	1 cut(s)	242
NdeII	GATC	7 cut(s)	265, 379, 493, 499, 682, 730, 737
NlaIII	CATG	2 cut(s)	323, 418
NlaIV	GGNNCC	4 cut(s)	150, 473, 483, 641
NmuCI	GTSAC	1 cut(s)	195
NspI	RCATGY	1 cut(s)	418
PaqCI	CACCTGC	1 cut(s)	469
PciI	ACATGT	1 cut(s)	414
PdmI	GAANNNNTTC	1 cut(s)	526
PfeI	GAWTC	2 cut(s)	5, 203
PfoI	TCCNGGA	1 cut(s)	240
PkrI	GCNGC	7 cut(s)	175, 232, 283, 286, 289, 697, 804
PscI	ACATGT	1 cut(s)	414
PshBI	ATTAAT	1 cut(s)	336
PspN4I	GGNNCC	4 cut(s)	150, 473, 483, 641
PspPI	GGNCC	1 cut(s)	640
PstI	CTGCAG	2 cut(s)	178, 286
PsuI	RGATCY	1 cut(s)	265
PvuII	CAGCTG	2 cut(s)	287, 846
RsaI	GTAC	2 cut(s)	403, 827
RsaNI	GTAC	2 cut(s)	402, 826
RseI	CAYNNNNRTG	1 cut(s)	373
SaqAI	TTAA	4 cut(s)	252, 336, 426, 603
SatI	GCNGC	7 cut(s)	174, 231, 282, 285, 288, 696, 803
Sau3AI	GATC	7 cut(s)	265, 379, 493, 499, 682, 730, 737
Sau96I	GGNCC	1 cut(s)	640
ScrFI	CCNGG	1 cut(s)	242
SetI	ASST	8 cut(s)	249, 289, 483, 519, 527, 631, 835, 848
SfaNI	GCATC	1 cut(s)	751
SfcI	CTRYAG	2 cut(s)	174, 282
SfiI	GGCCNNNNNGGCC	1 cut(s)	444
SinI	GGWCC	1 cut(s)	640
SmiMI	CAYNNNNRTG	1 cut(s)	373
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	7 cut(s)	20, 181, 343, 357, 454, 462, 489
SsiI	CCGC	1 cut(s)	230
SspMI	CTAG	1 cut(s)	626
StyD4I	CCNGG	1 cut(s)	240
TasI	AATT	7 cut(s)	20, 181, 343, 357, 454, 462, 489
TatI	WGTACW	2 cut(s)	401, 825
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	2 cut(s)	5, 203
Tru1I	TTAA	4 cut(s)	252, 336, 426, 603
Tru9I	TTAA	4 cut(s)	252, 336, 426, 603
TscAI	CASTG	1 cut(s)	676
TseFI	GTSAC	1 cut(s)	195
TseI	GCWGC	6 cut(s)	173, 281, 284, 287, 695, 802
Tsp45I	GTSAC	1 cut(s)	195
TspDTI	ATGAA	2 cut(s)	527, 791
TspRI	CASTG	1 cut(s)	676
Vha464I	CTTAAG	1 cut(s)	251
VpaK11BI	GGWCC	1 cut(s)	640
VspI	ATTAAT	1 cut(s)	336
XapI	RAATTY	3 cut(s)	181, 343, 462
XceI	RCATGY	1 cut(s)	418
XmnI	GAANNNNTTC	1 cut(s)	526
XspI	CTAG	1 cut(s)	626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.