Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0014236

Physical Location & Seq

Genomic Coordinates Reverse (-)

23277045 .. 23278592

Gene Structure 1548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g20490.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGATTATTGCCCGAAACTGTACGGGTAGACCAACTTGTCGCCAGTATCTACTATCCAATTGGCCATTGCTATATAAATGTTCAAAGCCTCATCAAACCAAGTGCACACAAAAAGTCAGTTCCTTATTAGCCCCTCACCAGCTAGCTCTCTTGTCCATGGCTTCCATTCCTCATCAATTCTACAATGACTATTCACTCCCTTCTCATTTTTATGGGTACCCAACTCCAATGGTGAGTGGAGAAAATGGTTGCAGTACTGCAGTTTTAGGTGGAACAATGTGGGGTGCTAGTACTACTTGTGAAGAAAGCTTGGTACCGTTTTGTGATATTAGCAATGCTGCGGCTAATTTTGAAGTGGTGTCACCAGAATCCGACATCTCTTCGTCTGTTATGGTAGCTTCGTTCCCGGAGCTACTAGGATTTTCGGAAGATATTGCTGTCCCTGGTACATATTCGGAATATGGTAATATGGGGATGCATGGAATTGCAGGGACTCCGAATTTTGGTGGAGAACTAAACCTACCTTATATGAATGATCAGTTGGGGGAGGATCGTTGTACTGGACTCATGCCAGCCGATTTCAAGCCGTTTAGCCTTGCTGGCCAAGAAAATTGGGCAATTAATCAAGCGAATCAGCAGGTGCCTACAATTGAAGATCAGTCTACTATGAAGGTGGGAAGGTATTCAGAAGAAGAAAGGAAAGAAAGGATTAACAGATATTTGAAGAAAAGAAACCAGAGAAACTTCAACAAAACTATTAAGTATGCTTGCCGCAAAACTCTAGCTGATAGAAGGGTCCGAGTTCGTGGGAGATTTGCAAGGAACACTGATCATCATGAGGAAATGGCACAAGAAAAGACTGAGAACAATATTCAAACCTGCAAAGATCAGCGATCAGAACTGTATTGTAGTAGCGGTACAGTCCAGATGAAATATGACGATGATGATTGGCTGCAAGAGGCCATGGCAAGTCTAATGTACTTCCCTCATGTCACAGCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0090567 GO:0104004 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

335

Amino Acids

37.57

Weight (kDa)

6.09

Isoelectric Point (pI)

47.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12890
fragaria_vesca	FvH4_3g15550
malus_domestica	MD05G1222200.v1.1 MD10G1203800.v1.1
prunus_persica	Prupe.4G138100_v2.0.a1
pyrus_communis	pycom05g20490
rosa_chinensis	RchiOBHm_Chr5g0026181
rosa_laevigata	RLG00000032910
rosa_multiflora	Rmu_sc0002909.1_g000012
rosa_roxburghii	Rroxscaffold_1G00053120
rosa_rugosa	Rorug05G0091600
rosa_samantha	Rh5AG184300 Rh5BG181100 Rh5CG200100 Rh5DG182700
rosa_wichuraiana	Rw5G016680 Rw5G016700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	628
AasI	GACNNNNNNGTC	1 cut(s)	36
Acc36I	ACCTGC	2 cut(s)	628, 887
Acc65I	GGTACC	2 cut(s)	216, 313
AccB1I	GGYRCC	3 cut(s)	216, 313, 640
AccI	GTMKAC	2 cut(s)	28, 662
AciI	CCGC	3 cut(s)	341, 772, 915
AclWI	GGATC	1 cut(s)	558
AcoI	YGGCCR	2 cut(s)	62, 601
AcsI	RAATTY	1 cut(s)	499
AfaI	GTAC	9 cut(s)	22, 218, 256, 292, 315, 448, 559, 919, 980
AfiI	CCNNNNNNNGG	1 cut(s)	503
AgsI	TTSAA	7 cut(s)	84, 353, 583, 653, 724, 748, 875
AjnI	CCWGG	1 cut(s)	442
AjuI	GAANNNNNNNTTGG	2 cut(s)	524, 556
AluBI	AGCT	7 cut(s)	142, 146, 309, 398, 412, 785, 998
AluI	AGCT	7 cut(s)	142, 146, 309, 398, 412, 785, 998
Alw21I	GWGCWC	1 cut(s)	107
Alw44I	GTGCAC	1 cut(s)	103
AlwI	GGATC	1 cut(s)	558
AoxI	GGCC	3 cut(s)	62, 601, 960
ApaLI	GTGCAC	1 cut(s)	103
ApeKI	GCWGC	2 cut(s)	338, 952
ApoI	RAATTY	1 cut(s)	499
AseI	ATTAAT	1 cut(s)	621
Asp700I	GAANNNNTTC	1 cut(s)	682
Asp718I	GGTACC	2 cut(s)	216, 313
AspS9I	GGNCC	1 cut(s)	796
AsuC2I	CCSGG	1 cut(s)	407
AsuHPI	GGTGA	3 cut(s)	128, 244, 354
AsuNHI	GCTAGC	1 cut(s)	142
AvaII	GGWCC	1 cut(s)	796
BaeGI	GKGCMC	1 cut(s)	107
BalI	TGGCCA	2 cut(s)	64, 603
BanI	GGYRCC	3 cut(s)	216, 313, 640
Bbv12I	GWGCWC	1 cut(s)	107
BbvI	GCAGC	2 cut(s)	325, 939
BceAI	ACGGC	1 cut(s)	571
BciT130I	CCWGG	1 cut(s)	444
BclI	TGATCA	2 cut(s)	535, 829
BcnI	CCSGG	1 cut(s)	407
BfaI	CTAG	4 cut(s)	143, 288, 416, 782
BfmI	CTRYAG	1 cut(s)	258
BfuAI	ACCTGC	2 cut(s)	628, 887
BglI	GCCNNNNNGGC	1 cut(s)	600
BisI	GCNGC	4 cut(s)	339, 342, 772, 953
BlsI	GCNGC	4 cut(s)	340, 343, 773, 954
BmcAI	AGTACT	2 cut(s)	256, 292
Bme1390I	CCNGG	2 cut(s)	407, 444
Bme18I	GGWCC	1 cut(s)	796
BmgT120I	GGNCC	1 cut(s)	796
BmiI	GGNNCC	4 cut(s)	218, 315, 642, 797
BmrFI	CCNGG	2 cut(s)	407, 444
BmsI	GCATC	1 cut(s)	465
BmtI	GCTAGC	1 cut(s)	146
BpuMI	CCSGG	1 cut(s)	407
BsaJI	CCNNGG	3 cut(s)	156, 442, 963
Bsc4I	CCNNNNNNNGG	1 cut(s)	503
Bse1I	ACTGG	2 cut(s)	43, 565
Bse3DI	GCAATG	2 cut(s)	65, 340
BseBI	CCWGG	1 cut(s)	444
BseDI	CCNNGG	3 cut(s)	156, 442, 963
BseGI	GGATG	1 cut(s)	480
BseLI	CCNNNNNNNGG	1 cut(s)	503
BseMI	GCAATG	2 cut(s)	65, 340
BseMII	CTCAG	1 cut(s)	852
BseNI	ACTGG	2 cut(s)	43, 565
BseSI	GKGCMC	1 cut(s)	107
BseXI	GCAGC	2 cut(s)	325, 939
BshFI	GGCC	3 cut(s)	64, 603, 962
BshNI	GGYRCC	3 cut(s)	216, 313, 640
BsiHKAI	GWGCWC	1 cut(s)	107
BsiSI	CCGG	1 cut(s)	407
BslFI	GGGAC	2 cut(s)	425, 505
BslI	CCNNNNNNNGG	1 cut(s)	503
BsmFI	GGGAC	2 cut(s)	425, 505
BsnI	GGCC	3 cut(s)	64, 603, 962
Bsp1286I	GDGCHC	1 cut(s)	107
Bsp143I	GATC	6 cut(s)	535, 550, 655, 829, 886, 893
Bsp19I	CCATGG	2 cut(s)	156, 963
BspACI	CCGC	3 cut(s)	341, 772, 915
BspANI	GGCC	3 cut(s)	64, 603, 962
BspCNI	CTCAG	1 cut(s)	853
BspHI	TCATGA	1 cut(s)	835
BspLI	GGNNCC	4 cut(s)	218, 315, 642, 797
BspMAI	CTGCAG	1 cut(s)	262
BspMI	ACCTGC	2 cut(s)	628, 887
BspOI	GCTAGC	1 cut(s)	146
BspPI	GGATC	1 cut(s)	558
BspT107I	GGYRCC	3 cut(s)	216, 313, 640
BsrDI	GCAATG	2 cut(s)	65, 340
BsrI	ACTGG	2 cut(s)	43, 565
BssECI	CCNNGG	3 cut(s)	156, 442, 963
BssMI	GATC	6 cut(s)	535, 550, 655, 829, 886, 893
BssT1I	CCWWGG	2 cut(s)	156, 963
Bst2UI	CCWGG	1 cut(s)	444
Bst4CI	ACNGT	4 cut(s)	20, 318, 903, 922
Bst6I	CTCTTC	1 cut(s)	385
BstC8I	GCNNGC	4 cut(s)	144, 573, 601, 769
BstDEI	CTNAG	1 cut(s)	861
BstDSI	CCRYGG	2 cut(s)	156, 963
BstF5I	GGATG	1 cut(s)	480
BstKTI	GATC	6 cut(s)	538, 553, 658, 832, 889, 896
BstMBI	GATC	6 cut(s)	535, 550, 655, 829, 886, 893
BstMWI	GCNNNNNNNGC	1 cut(s)	600
BstNI	CCWGG	1 cut(s)	444
BstSCI	CCNGG	2 cut(s)	405, 442
BstSFI	CTRYAG	1 cut(s)	258
BstSLI	GKGCMC	1 cut(s)	107
BstV1I	GCAGC	2 cut(s)	325, 939
BsuRI	GGCC	3 cut(s)	64, 603, 962
BtgI	CCRYGG	2 cut(s)	156, 963
BtsCI	GGATG	1 cut(s)	480
BtsIMutI	CAGTG	1 cut(s)	825
BveI	ACCTGC	2 cut(s)	628, 887
Cac8I	GCNNGC	4 cut(s)	144, 573, 601, 769
CciI	TCATGA	1 cut(s)	835
Cfr13I	GGNCC	1 cut(s)	796
Csp6I	GTAC	9 cut(s)	21, 217, 255, 291, 314, 447, 558, 918, 979
CviAII	CATG	6 cut(s)	157, 479, 568, 836, 964, 989
CviQI	GTAC	9 cut(s)	21, 217, 255, 291, 314, 447, 558, 918, 979
DdeI	CTNAG	1 cut(s)	861
DpnI	GATC	6 cut(s)	537, 552, 657, 831, 888, 895
DpnII	GATC	6 cut(s)	535, 550, 655, 829, 886, 893
DrdI	GACNNNNNNGTC	1 cut(s)	36
DseDI	GACNNNNNNGTC	1 cut(s)	36
EaeI	YGGCCR	2 cut(s)	62, 601
Eam1104I	CTCTTC	1 cut(s)	385
EarI	CTCTTC	1 cut(s)	385
Eco130I	CCWWGG	2 cut(s)	156, 963
Eco47I	GGWCC	1 cut(s)	796
EcoRII	CCWGG	1 cut(s)	442
EcoT14I	CCWWGG	2 cut(s)	156, 963
EcoT22I	ATGCAT	1 cut(s)	480
ErhI	CCWWGG	2 cut(s)	156, 963
FaeI	CATG	6 cut(s)	160, 482, 571, 839, 967, 992
FaqI	GGGAC	2 cut(s)	425, 505
FatI	CATG	6 cut(s)	156, 478, 567, 835, 963, 988
FbaI	TGATCA	2 cut(s)	535, 829
FblI	GTMKAC	2 cut(s)	28, 662
Fnu4HI	GCNGC	4 cut(s)	339, 342, 772, 953
FokI	GGATG	1 cut(s)	487
Fsp4HI	GCNGC	4 cut(s)	339, 342, 772, 953
FspBI	CTAG	4 cut(s)	143, 288, 416, 782
GluI	GCNGC	4 cut(s)	339, 342, 772, 953
HaeIII	GGCC	3 cut(s)	64, 603, 962
HapII	CCGG	1 cut(s)	407
Hin1II	CATG	6 cut(s)	160, 482, 571, 839, 967, 992
HindIII	AAGCTT	1 cut(s)	307
HinfI	GANTC	4 cut(s)	368, 493, 564, 631
HpaII	CCGG	1 cut(s)	407
HphI	GGTGA	3 cut(s)	128, 244, 354
Hpy166II	GTNNAC	3 cut(s)	29, 105, 663
Hpy188I	TCNGA	7 cut(s)	373, 427, 457, 498, 688, 800, 898
Hpy188III	TCNNGA	2 cut(s)	836, 925
Hpy8I	GTNNAC	3 cut(s)	29, 105, 663
HpyAV	CCTTC	4 cut(s)	210, 664, 672, 786
HpyCH4III	ACNGT	4 cut(s)	20, 318, 903, 922
HpyCH4V	TGCA	8 cut(s)	105, 252, 260, 478, 488, 818, 882, 955
HpyF10VI	GCNNNNNNNGC	1 cut(s)	600
HpyF3I	CTNAG	1 cut(s)	861
Hsp92II	CATG	6 cut(s)	160, 482, 571, 839, 967, 992
KpnI	GGTACC	2 cut(s)	220, 317
Ksp22I	TGATCA	2 cut(s)	535, 829
Kzo9I	GATC	6 cut(s)	535, 550, 655, 829, 886, 893
LmnI	GCTCC	1 cut(s)	409
Lsp1109I	GCAGC	2 cut(s)	325, 939
LweI	GCATC	1 cut(s)	465
MaeI	CTAG	4 cut(s)	143, 288, 416, 782
MaeIII	GTNAC	2 cut(s)	360, 991
MalI	GATC	6 cut(s)	537, 552, 657, 831, 888, 895
MboI	GATC	6 cut(s)	535, 550, 655, 829, 886, 893
MboII	GAAGA	7 cut(s)	314, 372, 440, 665, 701, 704, 736
MfeI	CAATTG	2 cut(s)	58, 648
MhlI	GDGCHC	1 cut(s)	107
MlsI	TGGCCA	2 cut(s)	64, 603
MluCI	AATT	8 cut(s)	58, 176, 346, 483, 499, 610, 618, 648
MluNI	TGGCCA	2 cut(s)	64, 603
MlyI	GAGTC	2 cut(s)	487, 558
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	7 cut(s)	99, 144, 180, 541, 832, 952, 996
Mox20I	TGGCCA	2 cut(s)	64, 603
Mph1103I	ATGCAT	1 cut(s)	480
MroXI	GAANNNNTTC	1 cut(s)	682
MscI	TGGCCA	2 cut(s)	64, 603
MseI	TTAA	3 cut(s)	621, 711, 759
MslI	CAYNNNNRTG	1 cut(s)	210
Msp20I	TGGCCA	2 cut(s)	64, 603
MspA1I	CMGCKG	1 cut(s)	998
MspI	CCGG	1 cut(s)	407
MspR9I	CCNGG	2 cut(s)	407, 444
MunI	CAATTG	2 cut(s)	58, 648
MvaI	CCWGG	1 cut(s)	444
MwoI	GCNNNNNNNGC	1 cut(s)	600
NciI	CCSGG	1 cut(s)	407
NcoI	CCATGG	2 cut(s)	156, 963
NdeII	GATC	6 cut(s)	535, 550, 655, 829, 886, 893
NheI	GCTAGC	1 cut(s)	142
NlaIII	CATG	6 cut(s)	160, 482, 571, 839, 967, 992
NlaIV	GGNNCC	4 cut(s)	218, 315, 642, 797
NmuCI	GTSAC	2 cut(s)	360, 991
NsiI	ATGCAT	1 cut(s)	480
PagI	TCATGA	1 cut(s)	835
PaqCI	CACCTGC	1 cut(s)	628
PdmI	GAANNNNTTC	1 cut(s)	682
PfeI	GAWTC	2 cut(s)	368, 631
PfoI	TCCNGGA	1 cut(s)	405
PkrI	GCNGC	4 cut(s)	340, 343, 773, 954
PleI	GAGTC	2 cut(s)	487, 558
PpsI	GAGTC	2 cut(s)	487, 558
PshBI	ATTAAT	1 cut(s)	621
Psp6I	CCWGG	1 cut(s)	442
PspGI	CCWGG	1 cut(s)	442
PspN4I	GGNNCC	4 cut(s)	218, 315, 642, 797
PspPI	GGNCC	1 cut(s)	796
PsrI	GAACNNNNNNTAC	2 cut(s)	504, 536
PstI	CTGCAG	1 cut(s)	262
PvuII	CAGCTG	1 cut(s)	998
RsaI	GTAC	9 cut(s)	22, 218, 256, 292, 315, 448, 559, 919, 980
RsaNI	GTAC	9 cut(s)	21, 217, 255, 291, 314, 447, 558, 918, 979
RseI	CAYNNNNRTG	1 cut(s)	210
SaqAI	TTAA	3 cut(s)	621, 711, 759
SatI	GCNGC	4 cut(s)	339, 342, 772, 953
Sau3AI	GATC	6 cut(s)	535, 550, 655, 829, 886, 893
Sau96I	GGNCC	1 cut(s)	796
ScaI	AGTACT	2 cut(s)	256, 292
SchI	GAGTC	2 cut(s)	487, 558
ScrFI	CCNGG	2 cut(s)	407, 444
SduI	GDGCHC	1 cut(s)	107
SfaNI	GCATC	1 cut(s)	465
SfcI	CTRYAG	1 cut(s)	258
SinI	GGWCC	1 cut(s)	796
SmiMI	CAYNNNNRTG	1 cut(s)	210
Sse9I	AATT	8 cut(s)	58, 176, 346, 483, 499, 610, 618, 648
SsiI	CCGC	3 cut(s)	341, 772, 915
SspI	AATATT	1 cut(s)	871
SspMI	CTAG	4 cut(s)	143, 288, 416, 782
StyD4I	CCNGG	2 cut(s)	405, 442
StyI	CCWWGG	2 cut(s)	156, 963
TaaI	ACNGT	4 cut(s)	20, 318, 903, 922
TasI	AATT	8 cut(s)	58, 176, 346, 483, 499, 610, 618, 648
TatI	WGTACW	4 cut(s)	254, 290, 557, 978
TauI	GCSGC	2 cut(s)	344, 774
TfiI	GAWTC	2 cut(s)	368, 631
Tru1I	TTAA	3 cut(s)	621, 711, 759
Tru9I	TTAA	3 cut(s)	621, 711, 759
TscAI	CASTG	1 cut(s)	832
TseFI	GTSAC	2 cut(s)	360, 991
TseI	GCWGC	2 cut(s)	338, 952
Tsp45I	GTSAC	2 cut(s)	360, 991
TspDTI	ATGAA	3 cut(s)	545, 683, 944
TspRI	CASTG	1 cut(s)	832
VneI	GTGCAC	1 cut(s)	103
VpaK11BI	GGWCC	1 cut(s)	796
VspI	ATTAAT	1 cut(s)	621
XapI	RAATTY	1 cut(s)	499
XmiI	GTMKAC	2 cut(s)	28, 662
XmnI	GAANNNNTTC	1 cut(s)	682
XspI	CTAG	4 cut(s)	143, 288, 416, 782
ZrmI	AGTACT	2 cut(s)	256, 292
Zsp2I	ATGCAT	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.