Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0014236

Physical Location & Seq

Genomic Coordinates Forward (+)

21226599 .. 21228037

Gene Structure 1439 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G016700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGATTCTCAATTCTATAATGACTATTCTCTCCCTTCTGAGTTTTTGCGGCTACCCAACTCCGGCTGTGGTGACCGGTTGCAGTCCAGGTATGGGTGGAGCAATGTGGGTACTAGTAGTCGTGAAGAAAACCTGGTACCGATATTCTGTGATAACAATGGTACTGCTAGTTTTGATATCGTGTCACCGGAGTCTGACATCTCTTCGTGTGCTATTGGGGTGGCAACAACGTTCCCGGAGCTACTTGGGTTTTCGGAAGACGCCGTGGCGCCTGTTTCATTTTCAGAGTATAGTCATCTGGGGTTGAATGGAATTGCAGGGCTGAATCAGAATTTTGGTGGTGGAGATTCTTACCTCCAGCTATATAATAAAGGTATTCAATCAAGGAAACCAGGTGCCTACATGGAAGATCAGTCGACAAATATGAAGGTGGGACGGTATTCAGAAGAAGAGAGGAAAGAAAGGATTGAGAGGTATTTGAAGAAAAGAAACCAAAGGAACTTCAACAAAACCATTAAGATCAAATATGACGAGGAAGACTGGCTGCAAGAAGCCATGGCAAGTCTAGTGTACTTACCTTATGTCACTGCTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0090567 GO:0104004 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

198

Amino Acids

22.27

Weight (kDa)

4.85

Isoelectric Point (pI)

62.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12890
fragaria_vesca	FvH4_3g15550
malus_domestica	MD05G1222200.v1.1 MD10G1203800.v1.1
prunus_persica	Prupe.4G138100_v2.0.a1
pyrus_communis	pycom05g20490
rosa_chinensis	RchiOBHm_Chr5g0026181
rosa_laevigata	RLG00000032910
rosa_multiflora	Rmu_sc0002909.1_g000012
rosa_roxburghii	Rroxscaffold_1G00053120
rosa_rugosa	Rorug05G0091600
rosa_samantha	Rh5AG184300 Rh5BG181100 Rh5CG200100 Rh5DG182700
rosa_wichuraiana	Rw5G016680 Rw5G016700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	136
AccB1I	GGYRCC	3 cut(s)	136, 268, 395
AccI	GTMKAC	1 cut(s)	416
AciI	CCGC	1 cut(s)	49
AclI	AACGTT	1 cut(s)	230
AcsI	RAATTY	1 cut(s)	331
AcyI	GRCGYC	2 cut(s)	261, 269
AfaI	GTAC	4 cut(s)	112, 138, 163, 572
AfiI	CCNNNNNNNGG	2 cut(s)	62, 93
AgeI	ACCGGT	1 cut(s)	75
AgsI	TTSAA	4 cut(s)	307, 380, 481, 505
AhlI	ACTAGT	1 cut(s)	113
AjnI	CCWGG	3 cut(s)	86, 132, 391
AluBI	AGCT	2 cut(s)	241, 361
AluI	AGCT	2 cut(s)	241, 361
ApeKI	GCWGC	1 cut(s)	544
ApoI	RAATTY	1 cut(s)	331
AsiGI	ACCGGT	1 cut(s)	75
Asp718I	GGTACC	1 cut(s)	136
AspLEI	GCGC	1 cut(s)	271
AsuC2I	CCSGG	1 cut(s)	236
AsuHPI	GGTGA	2 cut(s)	83, 177
BanI	GGYRCC	3 cut(s)	136, 268, 395
BbsI	GAAGAC	2 cut(s)	264, 543
BbvI	GCAGC	1 cut(s)	531
BceAI	ACGGC	1 cut(s)	248
BciT130I	CCWGG	3 cut(s)	88, 134, 393
BcnI	CCSGG	1 cut(s)	236
BcuI	ACTAGT	1 cut(s)	113
BfaI	CTAG	3 cut(s)	114, 168, 566
BfoI	RGCGCY	1 cut(s)	272
BisI	GCNGC	2 cut(s)	50, 545
BlsI	GCNGC	2 cut(s)	51, 546
Bme1390I	CCNGG	4 cut(s)	88, 134, 236, 393
BmiI	GGNNCC	3 cut(s)	138, 270, 397
BmrFI	CCNGG	4 cut(s)	88, 134, 236, 393
BpiI	GAAGAC	2 cut(s)	264, 543
BpmI	CTGGAG	1 cut(s)	341
BpuMI	CCSGG	1 cut(s)	236
BsaHI	GRCGYC	2 cut(s)	261, 269
BsaJI	CCNNGG	2 cut(s)	264, 555
BsaWI	WCCGGW	2 cut(s)	75, 187
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 93
Bse118I	RCCGGY	1 cut(s)	75
Bse1I	ACTGG	1 cut(s)	545
Bse3DI	GCAATG	1 cut(s)	109
BseBI	CCWGG	3 cut(s)	88, 134, 393
BseDI	CCNNGG	2 cut(s)	264, 555
BseLI	CCNNNNNNNGG	2 cut(s)	62, 93
BseMI	GCAATG	1 cut(s)	109
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	1 cut(s)	545
BseXI	GCAGC	1 cut(s)	531
BshNI	GGYRCC	3 cut(s)	136, 268, 395
BshTI	ACCGGT	1 cut(s)	75
BsiSI	CCGG	4 cut(s)	63, 76, 188, 236
BslFI	GGGAC	1 cut(s)	447
BslI	CCNNNNNNNGG	2 cut(s)	62, 93
BsmFI	GGGAC	1 cut(s)	447
Bsp143I	GATC	2 cut(s)	409, 519
Bsp19I	CCATGG	1 cut(s)	555
BspACI	CCGC	1 cut(s)	49
BspCNI	CTCAG	1 cut(s)	31
BspLI	GGNNCC	3 cut(s)	138, 270, 397
BspT107I	GGYRCC	3 cut(s)	136, 268, 395
BsrDI	GCAATG	1 cut(s)	109
BsrFI	RCCGGY	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	545
BssAI	RCCGGY	1 cut(s)	75
BssECI	CCNNGG	2 cut(s)	264, 555
BssMI	GATC	2 cut(s)	409, 519
BssNI	GRCGYC	2 cut(s)	261, 269
BssT1I	CCWWGG	1 cut(s)	555
Bst2UI	CCWGG	3 cut(s)	88, 134, 393
Bst4CI	ACNGT	1 cut(s)	438
Bst6I	CTCTTC	2 cut(s)	208, 444
BstACI	GRCGYC	2 cut(s)	261, 269
BstC8I	GCNNGC	1 cut(s)	592
BstDEI	CTNAG	1 cut(s)	39
BstDSI	CCRYGG	2 cut(s)	264, 555
BstEII	GGTNACC	1 cut(s)	71
BstH2I	RGCGCY	1 cut(s)	272
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	2 cut(s)	412, 522
BstMBI	GATC	2 cut(s)	409, 519
BstNI	CCWGG	3 cut(s)	88, 134, 393
BstPI	GGTNACC	1 cut(s)	71
BstSCI	CCNGG	4 cut(s)	86, 132, 234, 391
BstV1I	GCAGC	1 cut(s)	531
BstV2I	GAAGAC	2 cut(s)	264, 543
BtgI	CCRYGG	2 cut(s)	264, 555
BtsI	GCAGTG	1 cut(s)	585
BtsIMutI	CAGTG	1 cut(s)	585
Cac8I	GCNNGC	1 cut(s)	592
CfoI	GCGC	1 cut(s)	271
Cfr10I	RCCGGY	1 cut(s)	75
CseI	GACGC	1 cut(s)	269
CsiI	ACCWGGT	2 cut(s)	132, 391
Csp6I	GTAC	4 cut(s)	111, 137, 162, 571
CspAI	ACCGGT	1 cut(s)	75
CviAII	CATG	2 cut(s)	403, 556
CviJI	RGCY	8 cut(s)	52, 66, 241, 322, 361, 544, 554, 594
CviKI_1	RGCY	8 cut(s)	52, 66, 241, 322, 361, 544, 554, 594
CviQI	GTAC	4 cut(s)	111, 137, 162, 571
DdeI	CTNAG	1 cut(s)	39
DinI	GGCGCC	1 cut(s)	270
DpnI	GATC	2 cut(s)	411, 521
DpnII	GATC	2 cut(s)	409, 519
Eam1104I	CTCTTC	2 cut(s)	208, 444
EarI	CTCTTC	2 cut(s)	208, 444
Eco130I	CCWWGG	1 cut(s)	555
Eco32I	GATATC	1 cut(s)	178
Eco91I	GGTNACC	1 cut(s)	71
EcoO65I	GGTNACC	1 cut(s)	71
EcoRII	CCWGG	3 cut(s)	86, 132, 391
EcoRV	GATATC	1 cut(s)	178
EcoT14I	CCWWGG	1 cut(s)	555
EgeI	GGCGCC	1 cut(s)	270
EheI	GGCGCC	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	555
FaeI	CATG	2 cut(s)	406, 559
FaqI	GGGAC	1 cut(s)	447
FatI	CATG	2 cut(s)	402, 555
FblI	GTMKAC	1 cut(s)	416
Fnu4HI	GCNGC	2 cut(s)	50, 545
Fsp4HI	GCNGC	2 cut(s)	50, 545
FspBI	CTAG	3 cut(s)	114, 168, 566
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	2 cut(s)	50, 545
GsuI	CTGGAG	1 cut(s)	341
HaeII	RGCGCY	1 cut(s)	272
HapII	CCGG	4 cut(s)	63, 76, 188, 236
HgaI	GACGC	1 cut(s)	269
HhaI	GCGC	1 cut(s)	271
Hin1I	GRCGYC	2 cut(s)	261, 269
Hin1II	CATG	2 cut(s)	406, 559
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HincII	GTYRAC	1 cut(s)	417
HindII	GTYRAC	1 cut(s)	417
HinfI	GANTC	4 cut(s)	5, 191, 325, 347
HpaII	CCGG	4 cut(s)	63, 76, 188, 236
HphI	GGTGA	2 cut(s)	83, 177
Hpy166II	GTNNAC	2 cut(s)	417, 571
Hpy188I	TCNGA	6 cut(s)	40, 196, 256, 286, 330, 445
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	2 cut(s)	417, 571
HpyAV	CCTTC	2 cut(s)	45, 421
HpyCH4III	ACNGT	1 cut(s)	438
HpyCH4IV	ACGT	1 cut(s)	230
HpyCH4V	TGCA	3 cut(s)	82, 317, 547
HpyF3I	CTNAG	1 cut(s)	39
HpySE526I	ACGT	1 cut(s)	230
Hsp92I	GRCGYC	2 cut(s)	261, 269
Hsp92II	CATG	2 cut(s)	406, 559
HspAI	GCGC	1 cut(s)	269
KasI	GGCGCC	1 cut(s)	268
KpnI	GGTACC	1 cut(s)	140
Kzo9I	GATC	2 cut(s)	409, 519
LmnI	GCTCC	2 cut(s)	99, 238
Lsp1109I	GCAGC	1 cut(s)	531
MabI	ACCWGGT	2 cut(s)	132, 391
MaeI	CTAG	3 cut(s)	114, 168, 566
MaeII	ACGT	1 cut(s)	230
MaeIII	GTNAC	3 cut(s)	71, 183, 583
MalI	GATC	2 cut(s)	411, 521
MboI	GATC	2 cut(s)	409, 519
MboII	GAAGA	8 cut(s)	137, 195, 269, 419, 458, 461, 493, 548
MluCI	AATT	3 cut(s)	11, 312, 331
Mly113I	GGCGCC	1 cut(s)	269
MlyI	GAGTC	1 cut(s)	200
MnlI	CCTC	4 cut(s)	365, 447, 465, 526
MseI	TTAA	1 cut(s)	516
MspI	CCGG	4 cut(s)	63, 76, 188, 236
MspR9I	CCNGG	4 cut(s)	88, 134, 236, 393
MvaI	CCWGG	3 cut(s)	88, 134, 393
NarI	GGCGCC	1 cut(s)	269
NciI	CCSGG	1 cut(s)	236
NcoI	CCATGG	1 cut(s)	555
NdeII	GATC	2 cut(s)	409, 519
NlaIII	CATG	2 cut(s)	406, 559
NlaIV	GGNNCC	3 cut(s)	138, 270, 397
NmuCI	GTSAC	3 cut(s)	71, 183, 583
PfeI	GAWTC	3 cut(s)	5, 325, 347
PfoI	TCCNGGA	1 cut(s)	234
PinAI	ACCGGT	1 cut(s)	75
PkrI	GCNGC	2 cut(s)	51, 546
PleI	GAGTC	1 cut(s)	199
PluTI	GGCGCC	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	199
Psp1406I	AACGTT	1 cut(s)	230
Psp6I	CCWGG	3 cut(s)	86, 132, 391
PspEI	GGTNACC	1 cut(s)	71
PspGI	CCWGG	3 cut(s)	86, 132, 391
PspN4I	GGNNCC	3 cut(s)	138, 270, 397
RsaI	GTAC	4 cut(s)	112, 138, 163, 572
RsaNI	GTAC	4 cut(s)	111, 137, 162, 571
SalI	GTCGAC	1 cut(s)	415
SaqAI	TTAA	1 cut(s)	516
SatI	GCNGC	2 cut(s)	50, 545
Sau3AI	GATC	2 cut(s)	409, 519
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	4 cut(s)	88, 134, 236, 393
SexAI	ACCWGGT	2 cut(s)	132, 391
SfoI	GGCGCC	1 cut(s)	270
SpeI	ACTAGT	1 cut(s)	113
Sse9I	AATT	3 cut(s)	11, 312, 331
SsiI	CCGC	1 cut(s)	49
SspDI	GGCGCC	1 cut(s)	268
SspMI	CTAG	3 cut(s)	114, 168, 566
StyD4I	CCNGG	4 cut(s)	86, 132, 234, 391
StyI	CCWWGG	1 cut(s)	555
TaaI	ACNGT	1 cut(s)	438
TaiI	ACGT	1 cut(s)	233
TaqI	TCGA	1 cut(s)	416
TasI	AATT	3 cut(s)	11, 312, 331
TatI	WGTACW	1 cut(s)	570
TauI	GCSGC	1 cut(s)	52
TfiI	GAWTC	3 cut(s)	5, 325, 347
Tru1I	TTAA	1 cut(s)	516
Tru9I	TTAA	1 cut(s)	516
TscAI	CASTG	1 cut(s)	592
TseFI	GTSAC	3 cut(s)	71, 183, 583
TseI	GCWGC	1 cut(s)	544
Tsp45I	GTSAC	3 cut(s)	71, 183, 583
TspDTI	ATGAA	2 cut(s)	267, 440
TspRI	CASTG	1 cut(s)	592
XapI	RAATTY	1 cut(s)	331
XmiI	GTMKAC	1 cut(s)	416
XspI	CTAG	3 cut(s)	114, 168, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.