Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0014236

Physical Location & Seq

Genomic Coordinates Forward (+)

21025397 .. 21026830

Gene Structure 1434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG184300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGATTCTCAATTCTATAATGACTATTCTCTCCCTTCTGAGTTTTGCGGCTACCCAACTCCGGCTGTGGTGACCGGTTGCAGTCCAGGTATGGGTGGAGCAATGTGGGGTACTAGTAGTCGTGAAGAAAACCTGGTACCGATATTCTGTGATAACAATGGTACTGCTAGTTTTGATATCGTGTCACCGGAGTCTGACATCTCTTCGTGTGCTATTGGGGTGGCAACAACGTTCCCGGAGCTACTTGGGTTTTCGGAAGACGCCGTGGCGCCTGTTTCATTTTCAGAGTATAGTCATCTGGGGTTGAATGGAATTGCAGGGCTGAATCAGAATTTTGGTGGTGGAGATTCTTACCTCCAGCTATATAATAAAGGTAATATTATGCGTGATCAGTTTGGGGATCAGGAATGCTGTACTGGATTCATACCTGCTGATTCTAAGCCTCTTGGCCTTGCTGTTCAAGAAAATTGGGTATTCAATCAAGGAAACCAGGTGCCTACAATGGAAGATCAGTCGACAAATATGAAGGTGGGACGGTATTCAGAAGAAGAGAGGAAAGAAAGGATTGAGAGGTATTTGAAGAAAAGAAACCAAAGGAACTTCAACAAAACCATTAAGTATGCTTGTCGCAAAACCCTAGCTGATAGACGAGTCCGAGTTCGTGGGAGATTTGCAAGGAACAGCAGTAATGAACACCTAATTAATGAAGATCTAACTCATCAAGAAATGGCAACAAAAAAGATTGATGCCAATTGCAACAATCATGTTTGCAATGACATTTCTGAACAACTGTATTGTAGCGGCGGTGCCGTCCAGATCAAATATGACGAGGAGGACTGGCTGCAAGAAGCCATGGCAAGTCTAGTGTACTTACCTTATGTCACTGCTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0090567 GO:0104004 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

297

Amino Acids

33.09

Weight (kDa)

4.87

Isoelectric Point (pI)

51.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	185 - 227	2.8e-17	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12890
fragaria_vesca	FvH4_3g15550
malus_domestica	MD05G1222200.v1.1 MD10G1203800.v1.1
prunus_persica	Prupe.4G138100_v2.0.a1
pyrus_communis	pycom05g20490
rosa_chinensis	RchiOBHm_Chr5g0026181
rosa_laevigata	RLG00000032910
rosa_multiflora	Rmu_sc0002909.1_g000012
rosa_roxburghii	Rroxscaffold_1G00053120
rosa_rugosa	Rorug05G0091600
rosa_samantha	Rh5AG184300 Rh5BG181100 Rh5CG200100 Rh5DG182700
rosa_wichuraiana	Rw5G016680 Rw5G016700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	436
Acc65I	GGTACC	1 cut(s)	136
AccB1I	GGYRCC	4 cut(s)	136, 268, 493, 806
AccI	GTMKAC	1 cut(s)	515
AciI	CCGC	3 cut(s)	48, 801, 804
AclI	AACGTT	1 cut(s)	230
AclWI	GGATC	1 cut(s)	408
AcsI	RAATTY	1 cut(s)	331
AcyI	GRCGYC	2 cut(s)	261, 269
AfaI	GTAC	5 cut(s)	112, 138, 163, 415, 869
AfiI	CCNNNNNNNGG	2 cut(s)	61, 92
AgeI	ACCGGT	1 cut(s)	74
AgsI	TTSAA	5 cut(s)	307, 461, 478, 580, 604
AhlI	ACTAGT	1 cut(s)	113
AjnI	CCWGG	3 cut(s)	85, 132, 489
AluBI	AGCT	3 cut(s)	241, 361, 641
AluI	AGCT	3 cut(s)	241, 361, 641
AlwI	GGATC	1 cut(s)	408
AoxI	GGCC	1 cut(s)	448
ApeKI	GCWGC	1 cut(s)	841
ApoI	RAATTY	1 cut(s)	331
AseI	ATTAAT	1 cut(s)	702
AsiGI	ACCGGT	1 cut(s)	74
Asp718I	GGTACC	1 cut(s)	136
AspLEI	GCGC	1 cut(s)	271
AsuC2I	CCSGG	1 cut(s)	236
AsuHPI	GGTGA	2 cut(s)	82, 177
BanI	GGYRCC	4 cut(s)	136, 268, 493, 806
BbsI	GAAGAC	1 cut(s)	264
BbvI	GCAGC	1 cut(s)	828
BceAI	ACGGC	2 cut(s)	248, 794
BciT130I	CCWGG	3 cut(s)	87, 134, 491
BclI	TGATCA	1 cut(s)	388
BcnI	CCSGG	1 cut(s)	236
BcuI	ACTAGT	1 cut(s)	113
BfaI	CTAG	4 cut(s)	114, 168, 638, 863
BfoI	RGCGCY	1 cut(s)	272
BfuAI	ACCTGC	1 cut(s)	436
BglII	AGATCT	1 cut(s)	709
BisI	GCNGC	3 cut(s)	49, 802, 842
BlsI	GCNGC	3 cut(s)	50, 803, 843
Bme1390I	CCNGG	4 cut(s)	87, 134, 236, 491
BmiI	GGNNCC	4 cut(s)	138, 270, 495, 808
BmrFI	CCNGG	4 cut(s)	87, 134, 236, 491
BmsI	GCATC	1 cut(s)	736
BpiI	GAAGAC	1 cut(s)	264
BpmI	CTGGAG	1 cut(s)	341
BpuMI	CCSGG	1 cut(s)	236
BsaHI	GRCGYC	2 cut(s)	261, 269
BsaJI	CCNNGG	2 cut(s)	264, 852
BsaWI	WCCGGW	2 cut(s)	74, 187
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 92
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	2 cut(s)	421, 842
Bse3DI	GCAATG	2 cut(s)	108, 778
BseBI	CCWGG	3 cut(s)	87, 134, 491
BseDI	CCNNGG	2 cut(s)	264, 852
BseLI	CCNNNNNNNGG	2 cut(s)	61, 92
BseMI	GCAATG	2 cut(s)	108, 778
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	2 cut(s)	421, 842
BseRI	GAGGAG	1 cut(s)	845
BseXI	GCAGC	1 cut(s)	828
BshFI	GGCC	1 cut(s)	450
BshNI	GGYRCC	4 cut(s)	136, 268, 493, 806
BshTI	ACCGGT	1 cut(s)	74
BsiSI	CCGG	4 cut(s)	62, 75, 188, 236
BslFI	GGGAC	1 cut(s)	546
BslI	CCNNNNNNNGG	2 cut(s)	61, 92
BsmFI	GGGAC	1 cut(s)	546
BsmI	GAATGC	1 cut(s)	413
BsnI	GGCC	1 cut(s)	450
Bsp143I	GATC	5 cut(s)	388, 400, 508, 709, 816
Bsp19I	CCATGG	1 cut(s)	852
BspACI	CCGC	3 cut(s)	48, 801, 804
BspANI	GGCC	1 cut(s)	450
BspCNI	CTCAG	1 cut(s)	31
BspLI	GGNNCC	4 cut(s)	138, 270, 495, 808
BspMI	ACCTGC	1 cut(s)	436
BspPI	GGATC	1 cut(s)	408
BspT107I	GGYRCC	4 cut(s)	136, 268, 493, 806
BsrDI	GCAATG	2 cut(s)	108, 778
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	2 cut(s)	421, 842
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	2 cut(s)	264, 852
BssMI	GATC	5 cut(s)	388, 400, 508, 709, 816
BssNI	GRCGYC	2 cut(s)	261, 269
BssT1I	CCWWGG	1 cut(s)	852
Bst2UI	CCWGG	3 cut(s)	87, 134, 491
Bst4CI	ACNGT	2 cut(s)	537, 792
Bst6I	CTCTTC	2 cut(s)	208, 543
BstACI	GRCGYC	2 cut(s)	261, 269
BstC8I	GCNNGC	1 cut(s)	889
BstDEI	CTNAG	2 cut(s)	39, 438
BstDSI	CCRYGG	2 cut(s)	264, 852
BstEII	GGTNACC	1 cut(s)	70
BstH2I	RGCGCY	1 cut(s)	272
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	5 cut(s)	391, 403, 511, 712, 819
BstMBI	GATC	5 cut(s)	388, 400, 508, 709, 816
BstNI	CCWGG	3 cut(s)	87, 134, 491
BstPI	GGTNACC	1 cut(s)	70
BstSCI	CCNGG	4 cut(s)	85, 132, 234, 489
BstV1I	GCAGC	1 cut(s)	828
BstV2I	GAAGAC	1 cut(s)	264
BstX2I	RGATCY	1 cut(s)	709
BstYI	RGATCY	1 cut(s)	709
BsuRI	GGCC	1 cut(s)	450
BtgI	CCRYGG	2 cut(s)	264, 852
BtsI	GCAGTG	1 cut(s)	882
BtsIMutI	CAGTG	1 cut(s)	882
BveI	ACCTGC	1 cut(s)	436
Cac8I	GCNNGC	1 cut(s)	889
CfoI	GCGC	1 cut(s)	271
Cfr10I	RCCGGY	1 cut(s)	74
CseI	GACGC	1 cut(s)	269
CsiI	ACCWGGT	2 cut(s)	132, 489
Csp6I	GTAC	5 cut(s)	111, 137, 162, 414, 868
CspAI	ACCGGT	1 cut(s)	74
CviAII	CATG	2 cut(s)	764, 853
CviQI	GTAC	5 cut(s)	111, 137, 162, 414, 868
DdeI	CTNAG	2 cut(s)	39, 438
DinI	GGCGCC	1 cut(s)	270
DpnI	GATC	5 cut(s)	390, 402, 510, 711, 818
DpnII	GATC	5 cut(s)	388, 400, 508, 709, 816
Eam1104I	CTCTTC	2 cut(s)	208, 543
EarI	CTCTTC	2 cut(s)	208, 543
Eco130I	CCWWGG	1 cut(s)	852
Eco32I	GATATC	1 cut(s)	178
Eco91I	GGTNACC	1 cut(s)	70
EcoO65I	GGTNACC	1 cut(s)	70
EcoRII	CCWGG	3 cut(s)	85, 132, 489
EcoRV	GATATC	1 cut(s)	178
EcoT14I	CCWWGG	1 cut(s)	852
EgeI	GGCGCC	1 cut(s)	270
EheI	GGCGCC	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	852
FaeI	CATG	2 cut(s)	767, 856
FaqI	GGGAC	1 cut(s)	546
FatI	CATG	2 cut(s)	763, 852
FbaI	TGATCA	1 cut(s)	388
FblI	GTMKAC	1 cut(s)	515
Fnu4HI	GCNGC	3 cut(s)	49, 802, 842
Fsp4HI	GCNGC	3 cut(s)	49, 802, 842
FspBI	CTAG	4 cut(s)	114, 168, 638, 863
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	3 cut(s)	49, 802, 842
GsuI	CTGGAG	1 cut(s)	341
HaeII	RGCGCY	1 cut(s)	272
HaeIII	GGCC	1 cut(s)	450
HapII	CCGG	4 cut(s)	62, 75, 188, 236
HgaI	GACGC	1 cut(s)	269
HhaI	GCGC	1 cut(s)	271
Hin1I	GRCGYC	2 cut(s)	261, 269
Hin1II	CATG	2 cut(s)	767, 856
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HincII	GTYRAC	1 cut(s)	516
HindII	GTYRAC	1 cut(s)	516
HinfI	GANTC	7 cut(s)	5, 191, 325, 347, 420, 434, 651
HpaII	CCGG	4 cut(s)	62, 75, 188, 236
HphI	GGTGA	2 cut(s)	82, 177
Hpy166II	GTNNAC	2 cut(s)	516, 868
Hpy188I	TCNGA	8 cut(s)	40, 196, 256, 286, 330, 544, 656, 784
Hpy188III	TCNNGA	5 cut(s)	122, 404, 461, 722, 814
Hpy8I	GTNNAC	2 cut(s)	516, 868
HpyAV	CCTTC	2 cut(s)	45, 520
HpyCH4III	ACNGT	2 cut(s)	537, 792
HpyCH4IV	ACGT	1 cut(s)	230
HpyCH4V	TGCA	6 cut(s)	81, 317, 674, 756, 771, 844
HpyF3I	CTNAG	2 cut(s)	39, 438
HpySE526I	ACGT	1 cut(s)	230
Hsp92I	GRCGYC	2 cut(s)	261, 269
Hsp92II	CATG	2 cut(s)	767, 856
HspAI	GCGC	1 cut(s)	269
KasI	GGCGCC	1 cut(s)	268
KpnI	GGTACC	1 cut(s)	140
Ksp22I	TGATCA	1 cut(s)	388
Kzo9I	GATC	5 cut(s)	388, 400, 508, 709, 816
LmnI	GCTCC	2 cut(s)	98, 238
Lsp1109I	GCAGC	1 cut(s)	828
LweI	GCATC	1 cut(s)	736
MabI	ACCWGGT	2 cut(s)	132, 489
MaeI	CTAG	4 cut(s)	114, 168, 638, 863
MaeII	ACGT	1 cut(s)	230
MaeIII	GTNAC	3 cut(s)	70, 183, 880
MalI	GATC	5 cut(s)	390, 402, 510, 711, 818
MboI	GATC	5 cut(s)	388, 400, 508, 709, 816
MboII	GAAGA	8 cut(s)	137, 195, 269, 518, 557, 560, 592, 719
MfeI	CAATTG	1 cut(s)	751
MflI	RGATCY	1 cut(s)	709
MluCI	AATT	6 cut(s)	11, 312, 331, 466, 699, 751
Mly113I	GGCGCC	1 cut(s)	269
MlyI	GAGTC	2 cut(s)	200, 660
MnlI	CCTC	6 cut(s)	365, 453, 546, 564, 823, 826
MseI	TTAA	2 cut(s)	615, 702
MspI	CCGG	4 cut(s)	62, 75, 188, 236
MspR9I	CCNGG	4 cut(s)	87, 134, 236, 491
MunI	CAATTG	1 cut(s)	751
Mva1269I	GAATGC	1 cut(s)	413
MvaI	CCWGG	3 cut(s)	87, 134, 491
NarI	GGCGCC	1 cut(s)	269
NciI	CCSGG	1 cut(s)	236
NcoI	CCATGG	1 cut(s)	852
NdeII	GATC	5 cut(s)	388, 400, 508, 709, 816
NlaIII	CATG	2 cut(s)	767, 856
NlaIV	GGNNCC	4 cut(s)	138, 270, 495, 808
NmuCI	GTSAC	3 cut(s)	70, 183, 880
PctI	GAATGC	1 cut(s)	413
PfeI	GAWTC	5 cut(s)	5, 325, 347, 420, 434
PfoI	TCCNGGA	1 cut(s)	234
PinAI	ACCGGT	1 cut(s)	74
PkrI	GCNGC	3 cut(s)	50, 803, 843
PleI	GAGTC	2 cut(s)	199, 659
PluTI	GGCGCC	1 cut(s)	272
PpsI	GAGTC	2 cut(s)	199, 659
PshBI	ATTAAT	1 cut(s)	702
Psp1406I	AACGTT	1 cut(s)	230
Psp6I	CCWGG	3 cut(s)	85, 132, 489
PspEI	GGTNACC	1 cut(s)	70
PspGI	CCWGG	3 cut(s)	85, 132, 489
PspN4I	GGNNCC	4 cut(s)	138, 270, 495, 808
PsuI	RGATCY	1 cut(s)	709
RsaI	GTAC	5 cut(s)	112, 138, 163, 415, 869
RsaNI	GTAC	5 cut(s)	111, 137, 162, 414, 868
SalI	GTCGAC	1 cut(s)	514
SaqAI	TTAA	2 cut(s)	615, 702
SatI	GCNGC	3 cut(s)	49, 802, 842
Sau3AI	GATC	5 cut(s)	388, 400, 508, 709, 816
SchI	GAGTC	2 cut(s)	200, 660
ScrFI	CCNGG	4 cut(s)	87, 134, 236, 491
SexAI	ACCWGGT	2 cut(s)	132, 489
SfaNI	GCATC	1 cut(s)	736
SfoI	GGCGCC	1 cut(s)	270
SpeI	ACTAGT	1 cut(s)	113
Sse9I	AATT	6 cut(s)	11, 312, 331, 466, 699, 751
SsiI	CCGC	3 cut(s)	48, 801, 804
SspDI	GGCGCC	1 cut(s)	268
SspI	AATATT	1 cut(s)	379
SspMI	CTAG	4 cut(s)	114, 168, 638, 863
StyD4I	CCNGG	4 cut(s)	85, 132, 234, 489
StyI	CCWWGG	1 cut(s)	852
TaaI	ACNGT	2 cut(s)	537, 792
TaiI	ACGT	1 cut(s)	233
TaqI	TCGA	1 cut(s)	515
TasI	AATT	6 cut(s)	11, 312, 331, 466, 699, 751
TatI	WGTACW	2 cut(s)	413, 867
TauI	GCSGC	2 cut(s)	51, 804
TfiI	GAWTC	5 cut(s)	5, 325, 347, 420, 434
Tru1I	TTAA	2 cut(s)	615, 702
Tru9I	TTAA	2 cut(s)	615, 702
TscAI	CASTG	1 cut(s)	889
TseFI	GTSAC	3 cut(s)	70, 183, 880
TseI	GCWGC	1 cut(s)	841
Tsp45I	GTSAC	3 cut(s)	70, 183, 880
TspDTI	ATGAA	5 cut(s)	267, 412, 539, 705, 720
TspRI	CASTG	1 cut(s)	889
VspI	ATTAAT	1 cut(s)	702
XapI	RAATTY	1 cut(s)	331
XmiI	GTMKAC	1 cut(s)	515
XspI	CTAG	4 cut(s)	114, 168, 638, 863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.