Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010010

Physical Location & Seq

Genomic Coordinates Reverse (-)

4219310 .. 4221666

Gene Structure 2357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G13120.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCGGTTTCTACTGTATCGTCGTTTCTATTGCCATCTTTCGGCATTCCAAGCTCTTCGCCTTCTTCTACCAGACTCAAAGTCTCTCTGCTGCCTTCATCTTCTACCCATGGCGGCCTTAGTTCCTGCGTCCTTACGAAACCATCCGTCTCGCTTACGAAGGTCTTCGCTGTTCCCGATACCCTAGATCCAACTCCAGAAATTCTCGATGAACCCGCCTCTGAGGTTCCGAGCTCTTCATCCATCAGTGTAGACGCGGATAAGATGGCGCCAAAGCAAAAGATTAGGATCAAGCTTAGATCATACTGGGTGCCTCTTATTGAGGACTCATGCAAGCAGATACTTGATGCTGCGAGAAACACCAATGCAAAGACGATGGGTCCTGTTCCATTGCCAACCAAGAAGCGTATCTACTGTGTTCTCAAGTCTCCTCACGTTCACAAGGATGCTAGGTTCCATTTTGAAATCCGGACACACCAGCGCATGATTGATATTCTCTACCCGACTGCTCAAACTATCGATTCTTTGATGCAACTTGATCTTCCTGCTGGTGTCGATGTGGAAGTGAAGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

191

Amino Acids

20.84

Weight (kDa)

8.99

Isoelectric Point (pI)

60.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S10	PF00338	96 - 190	2.5e-33	Ribosomal protein S10p/S20e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13120 AT3G13120 AT3G13120
fragaria_vesca	FvH4_3g29500
malus_domestica	MD03G1187000.v1.1 MD11G1202000.v1.1
prunus_persica	Prupe.4G239600_v2.0.a1
pyrus_communis	pycom03g13930 pycom11g17450
rosa_chinensis	RchiOBHm_Chr5g0054381
rosa_laevigata	RLG00000034928
rosa_multiflora	Rmu_sc0005705.1_g000022
rosa_roxburghii	Rroxscaffold_1G00026490
rosa_rugosa	Rorug05G0286000 Rorug05G0286000
rosa_samantha	Rh5AG356500 Rh5BG368100 Rh5CG391400 Rh5DG382300
rosa_wichuraiana	Rw5G033490 Rw5G033660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	268, 310
AccI	GTMKAC	1 cut(s)	252
AccII	CGCG	1 cut(s)	257
AccIII	TCCGGA	1 cut(s)	468
AciI	CCGC	4 cut(s)	5, 114, 216, 257
AclWI	GGATC	2 cut(s)	182, 296
AcsI	RAATTY	1 cut(s)	201
AcyI	GRCGYC	1 cut(s)	269
AfiI	CCNNNNNNNGG	1 cut(s)	41
AgsI	TTSAA	1 cut(s)	464
AhdI	GACNNNNNGTC	2 cut(s)	80, 378
AloI	GAACNNNNNNTCC	2 cut(s)	437, 469
AluBI	AGCT	4 cut(s)	54, 234, 295, 571
AluI	AGCT	4 cut(s)	54, 234, 295, 571
Alw21I	GWGCWC	1 cut(s)	236
Alw26I	GTCTC	3 cut(s)	88, 154, 432
AlwI	GGATC	2 cut(s)	182, 296
Aor13HI	TCCGGA	1 cut(s)	468
AoxI	GGCC	1 cut(s)	115
ApeKI	GCWGC	2 cut(s)	91, 350
ApoI	RAATTY	1 cut(s)	201
Asp700I	GAANNNNTTC	1 cut(s)	164
AspLEI	GCGC	2 cut(s)	271, 483
AspS9I	GGNCC	1 cut(s)	380
AvaII	GGWCC	1 cut(s)	380
BanI	GGYRCC	2 cut(s)	268, 310
BanII	GRGCYC	1 cut(s)	236
BarI	GAAGNNNNNNTAC	2 cut(s)	395, 427
BbsI	GAAGAC	1 cut(s)	157
Bbv12I	GWGCWC	1 cut(s)	236
BbvI	GCAGC	2 cut(s)	78, 337
BccI	CCATC	5 cut(s)	43, 151, 251, 259, 370
BcoDI	GTCTC	3 cut(s)	88, 154, 432
BfaI	CTAG	2 cut(s)	185, 450
BfoI	RGCGCY	1 cut(s)	272
BisI	GCNGC	3 cut(s)	92, 115, 351
BlsI	GCNGC	3 cut(s)	93, 116, 352
Bme18I	GGWCC	1 cut(s)	380
BmeRI	GACNNNNNGTC	2 cut(s)	80, 378
BmgT120I	GGNCC	1 cut(s)	380
BmiI	GGNNCC	5 cut(s)	228, 270, 312, 381, 455
BmrI	ACTGGG	1 cut(s)	316
BmsI	GCATC	3 cut(s)	337, 436, 519
BmuI	ACTGGG	1 cut(s)	316
BpiI	GAAGAC	1 cut(s)	157
BpmI	CTGGAG	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	407
Bsa29I	ATCGAT	1 cut(s)	519
BsaBI	GATNNNNATC	1 cut(s)	287
BsaHI	GRCGYC	1 cut(s)	269
BsaJI	CCNNGG	1 cut(s)	109
BsaWI	WCCGGW	1 cut(s)	468
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse1I	ACTGG	1 cut(s)	311
Bse3DI	GCAATG	1 cut(s)	389
Bse8I	GATNNNNATC	1 cut(s)	287
BseAI	TCCGGA	1 cut(s)	468
BseCI	ATCGAT	1 cut(s)	519
BseDI	CCNNGG	1 cut(s)	109
BseGI	GGATG	3 cut(s)	143, 239, 451
BseJI	GATNNNNATC	1 cut(s)	287
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseMI	GCAATG	1 cut(s)	389
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	1 cut(s)	311
BseRI	GAGGAG	1 cut(s)	420
BseXI	GCAGC	2 cut(s)	78, 337
Bsh1236I	CGCG	1 cut(s)	257
BshFI	GGCC	1 cut(s)	117
BshNI	GGYRCC	2 cut(s)	268, 310
BshVI	ATCGAT	1 cut(s)	519
BsiHKAI	GWGCWC	1 cut(s)	236
BsiSI	CCGG	1 cut(s)	469
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmAI	GTCTC	3 cut(s)	88, 154, 432
BsmBI	CGTCTC	1 cut(s)	154
BsmI	GAATGC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	117
Bsp1286I	GDGCHC	1 cut(s)	236
Bsp13I	TCCGGA	1 cut(s)	468
Bsp143I	GATC	4 cut(s)	187, 288, 299, 538
Bsp19I	CCATGG	1 cut(s)	109
BspACI	CCGC	4 cut(s)	5, 114, 216, 257
BspANI	GGCC	1 cut(s)	117
BspCNI	CTCAG	1 cut(s)	214
BspDI	ATCGAT	1 cut(s)	519
BspEI	TCCGGA	1 cut(s)	468
BspFNI	CGCG	1 cut(s)	257
BspLI	GGNNCC	5 cut(s)	228, 270, 312, 381, 455
BspPI	GGATC	2 cut(s)	182, 296
BspQI	GCTCTTC	2 cut(s)	61, 241
BspT107I	GGYRCC	2 cut(s)	268, 310
BsrDI	GCAATG	1 cut(s)	389
BsrI	ACTGG	1 cut(s)	311
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	4 cut(s)	187, 288, 299, 538
BssNI	GRCGYC	1 cut(s)	269
BssT1I	CCWWGG	1 cut(s)	109
Bst4CI	ACNGT	2 cut(s)	16, 416
Bst6I	CTCTTC	2 cut(s)	61, 241
BstACI	GRCGYC	1 cut(s)	269
BstC8I	GCNNGC	1 cut(s)	335
BstDEI	CTNAG	3 cut(s)	119, 222, 296
BstDSI	CCRYGG	1 cut(s)	109
BstF5I	GGATG	3 cut(s)	143, 239, 451
BstFNI	CGCG	1 cut(s)	257
BstH2I	RGCGCY	1 cut(s)	272
BstHHI	GCGC	2 cut(s)	271, 483
BstKTI	GATC	4 cut(s)	190, 291, 302, 541
BstMAI	GTCTC	3 cut(s)	88, 154, 432
BstMBI	GATC	4 cut(s)	187, 288, 299, 538
BstMWI	GCNNNNNNNGC	1 cut(s)	51
BstUI	CGCG	1 cut(s)	257
BstV1I	GCAGC	2 cut(s)	78, 337
BstV2I	GAAGAC	1 cut(s)	157
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
Bsu15I	ATCGAT	1 cut(s)	519
BsuRI	GGCC	1 cut(s)	117
BsuTUI	ATCGAT	1 cut(s)	519
BtgI	CCRYGG	1 cut(s)	109
BtsCI	GGATG	3 cut(s)	143, 239, 451
BtsIMutI	CAGTG	1 cut(s)	253
Cac8I	GCNNGC	1 cut(s)	335
CfoI	GCGC	2 cut(s)	271, 483
Cfr13I	GGNCC	1 cut(s)	380
ClaI	ATCGAT	1 cut(s)	519
CseI	GACGC	2 cut(s)	118, 263
CviAII	CATG	3 cut(s)	110, 330, 484
CviJI	RGCY	5 cut(s)	54, 117, 234, 295, 571
CviKI_1	RGCY	5 cut(s)	54, 117, 234, 295, 571
DdeI	CTNAG	3 cut(s)	119, 222, 296
DinI	GGCGCC	1 cut(s)	270
DpnI	GATC	4 cut(s)	189, 290, 301, 540
DpnII	GATC	4 cut(s)	187, 288, 299, 538
DriI	GACNNNNNGTC	2 cut(s)	80, 378
Eam1104I	CTCTTC	2 cut(s)	61, 241
Eam1105I	GACNNNNNGTC	2 cut(s)	80, 378
EarI	CTCTTC	2 cut(s)	61, 241
Ecl136II	GAGCTC	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	109
Eco24I	GRGCYC	1 cut(s)	236
Eco47I	GGWCC	1 cut(s)	380
Eco53kI	GAGCTC	1 cut(s)	234
EcoICRI	GAGCTC	1 cut(s)	234
EcoO109I	RGGNCCY	1 cut(s)	380
EcoT14I	CCWWGG	1 cut(s)	109
EcoT38I	GRGCYC	1 cut(s)	236
EgeI	GGCGCC	1 cut(s)	270
EheI	GGCGCC	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	109
Esp3I	CGTCTC	1 cut(s)	154
FaeI	CATG	3 cut(s)	113, 333, 487
FaiI	YATR	4 cut(s)	111, 304, 331, 485
FatI	CATG	3 cut(s)	109, 329, 483
FauI	CCCGC	1 cut(s)	223
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	3 cut(s)	92, 115, 351
FokI	GGATG	3 cut(s)	130, 226, 458
FriOI	GRGCYC	1 cut(s)	236
Fsp4HI	GCNGC	3 cut(s)	92, 115, 351
FspBI	CTAG	2 cut(s)	185, 450
GlaI	GCGC	2 cut(s)	270, 482
GluI	GCNGC	3 cut(s)	92, 115, 351
GsuI	CTGGAG	1 cut(s)	180
HaeII	RGCGCY	1 cut(s)	272
HaeIII	GGCC	1 cut(s)	117
HapII	CCGG	1 cut(s)	469
HgaI	GACGC	2 cut(s)	118, 263
HhaI	GCGC	2 cut(s)	271, 483
Hin1I	GRCGYC	1 cut(s)	269
Hin1II	CATG	3 cut(s)	113, 333, 487
Hin6I	GCGC	2 cut(s)	269, 481
HinP1I	GCGC	2 cut(s)	269, 481
HindIII	AAGCTT	1 cut(s)	293
HinfI	GANTC	3 cut(s)	75, 326, 521
HpaII	CCGG	1 cut(s)	469
Hpy166II	GTNNAC	2 cut(s)	253, 439
Hpy188I	TCNGA	3 cut(s)	223, 231, 575
Hpy188III	TCNNGA	4 cut(s)	176, 197, 206, 469
Hpy8I	GTNNAC	2 cut(s)	253, 439
Hpy99I	CGWCG	1 cut(s)	25
HpyAV	CCTTC	3 cut(s)	72, 105, 154
HpyCH4III	ACNGT	2 cut(s)	16, 416
HpyCH4IV	ACGT	1 cut(s)	435
HpyCH4V	TGCA	3 cut(s)	333, 368, 532
HpyF10VI	GCNNNNNNNGC	1 cut(s)	51
HpyF3I	CTNAG	3 cut(s)	119, 222, 296
HpySE526I	ACGT	1 cut(s)	435
Hsp92I	GRCGYC	1 cut(s)	269
Hsp92II	CATG	3 cut(s)	113, 333, 487
HspAI	GCGC	2 cut(s)	269, 481
KasI	GGCGCC	1 cut(s)	268
Kpn2I	TCCGGA	1 cut(s)	468
Kzo9I	GATC	4 cut(s)	187, 288, 299, 538
LguI	GCTCTTC	2 cut(s)	61, 241
LpnPI	CCDG	9 cut(s)	85, 139, 210, 292, 396, 482, 491, 534, 558
Lsp1109I	GCAGC	2 cut(s)	78, 337
LweI	GCATC	3 cut(s)	337, 436, 519
MaeI	CTAG	2 cut(s)	185, 450
MaeII	ACGT	1 cut(s)	435
MalI	GATC	4 cut(s)	189, 290, 301, 540
MboI	GATC	4 cut(s)	187, 288, 299, 538
MboII	GAAGA	6 cut(s)	48, 57, 93, 157, 228, 533
MflI	RGATCY	1 cut(s)	187
MhlI	GDGCHC	1 cut(s)	236
MluCI	AATT	1 cut(s)	201
Mly113I	GGCGCC	1 cut(s)	269
MlyI	GAGTC	2 cut(s)	69, 320
MmeI	TCCRAC	1 cut(s)	215
MnlI	CCTC	5 cut(s)	217, 229, 316, 324, 441
MroI	TCCGGA	1 cut(s)	468
MroXI	GAANNNNTTC	1 cut(s)	164
MslI	CAYNNNNRTG	1 cut(s)	444
MspI	CCGG	1 cut(s)	469
Mva1269I	GAATGC	1 cut(s)	45
MvnI	CGCG	1 cut(s)	257
MwoI	GCNNNNNNNGC	1 cut(s)	51
NarI	GGCGCC	1 cut(s)	269
NcoI	CCATGG	1 cut(s)	109
NdeII	GATC	4 cut(s)	187, 288, 299, 538
NlaIII	CATG	3 cut(s)	113, 333, 487
NlaIV	GGNNCC	5 cut(s)	228, 270, 312, 381, 455
PciSI	GCTCTTC	2 cut(s)	61, 241
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PctI	GAATGC	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	521
PkrI	GCNGC	3 cut(s)	93, 116, 352
PleI	GAGTC	2 cut(s)	69, 320
PluTI	GGCGCC	1 cut(s)	272
PpsI	GAGTC	2 cut(s)	69, 320
PpuMI	RGGWCCY	1 cut(s)	380
Psp124BI	GAGCTC	1 cut(s)	236
Psp5II	RGGWCCY	1 cut(s)	380
PspN4I	GGNNCC	5 cut(s)	228, 270, 312, 381, 455
PspPI	GGNCC	1 cut(s)	380
PspPPI	RGGWCCY	1 cut(s)	380
PsuI	RGATCY	1 cut(s)	187
RseI	CAYNNNNRTG	1 cut(s)	444
SacI	GAGCTC	1 cut(s)	236
SapI	GCTCTTC	2 cut(s)	61, 241
SatI	GCNGC	3 cut(s)	92, 115, 351
Sau3AI	GATC	4 cut(s)	187, 288, 299, 538
Sau96I	GGNCC	1 cut(s)	380
SchI	GAGTC	2 cut(s)	69, 320
SduI	GDGCHC	1 cut(s)	236
SetI	ASST	8 cut(s)	56, 165, 228, 236, 297, 438, 455, 573
SfaNI	GCATC	3 cut(s)	337, 436, 519
SfoI	GGCGCC	1 cut(s)	270
SinI	GGWCC	1 cut(s)	380
SmiMI	CAYNNNNRTG	1 cut(s)	444
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse9I	AATT	1 cut(s)	201
SsiI	CCGC	4 cut(s)	5, 114, 216, 257
SspDI	GGCGCC	1 cut(s)	268
SspMI	CTAG	2 cut(s)	185, 450
SstI	GAGCTC	1 cut(s)	236
StyI	CCWWGG	1 cut(s)	109
TaaI	ACNGT	2 cut(s)	16, 416
TaiI	ACGT	1 cut(s)	438
TaqI	TCGA	3 cut(s)	207, 519, 555
TasI	AATT	1 cut(s)	201
TauI	GCSGC	1 cut(s)	117
TfiI	GAWTC	1 cut(s)	521
TscAI	CASTG	1 cut(s)	253
TseI	GCWGC	2 cut(s)	91, 350
TspDTI	ATGAA	3 cut(s)	87, 225, 228
TspGWI	ACGGA	1 cut(s)	136
TspRI	CASTG	1 cut(s)	253
VpaK11BI	GGWCC	1 cut(s)	380
XapI	RAATTY	1 cut(s)	201
XmiI	GTMKAC	1 cut(s)	252
XmnI	GAANNNNTTC	1 cut(s)	164
XspI	CTAG	2 cut(s)	185, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.