Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010010

Physical Location & Seq

Genomic Coordinates Forward (+)

22547444 .. 22550620

Gene Structure 3177 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g29500.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGCGGTTTCTTCAATTTCCGCAACCCTAATTCCTTCTCTTCCTCTCTCCAATTCCTCTCCATTTCCTTCCTCTATACCCAAGCTCTCTTCTTTCTCTTTTCCCGCTTCCCACAATGCCACAAAGCTTCGAGCTTTGAGACCCTCACTGTCTTCCACTAGGGTTTATGCTGCTCCTGAAGTCCTTGACAGCCCAGTACCGCCTCCGGAAATCCTTGAAGGGCCTAATTCCGATGAGACTCCGAGCACTTCGTCACTCAGCATTGGCGGGGATGATAAGATAACACCGAAGCAGAAGATTAGGATTAAGCTTAGATCATACTTTGTGCCTCTGATAGAGGATTCTTGCAAGCAGATAATGGATGCTGCAAGGAATACAAATGCAAAGACTATGGGTCCTGTGCCCTTACCAACCAAAAAGCGGATCTACTGTGTTCTGAAATCACCCCATGTCCACAAGGATGCAAGGTTCCATTTTGAGATCCGTACCCACCAGCGGCTTATTGACATTCTTTACCCAACAGCCCAAACAATTGATTCCTTGATGCAACTTGACCTTCCTGCTGGAGTCGATGTGGAGGTCAAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

197

Amino Acids

21.45

Weight (kDa)

9.27

Isoelectric Point (pI)

64.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S10	PF00338	101 - 195	1.4e-33	Ribosomal protein S10p/S20e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13120 AT3G13120 AT3G13120
fragaria_vesca	FvH4_3g29500
malus_domestica	MD03G1187000.v1.1 MD11G1202000.v1.1
prunus_persica	Prupe.4G239600_v2.0.a1
pyrus_communis	pycom03g13930 pycom11g17450
rosa_chinensis	RchiOBHm_Chr5g0054381
rosa_laevigata	RLG00000034928
rosa_multiflora	Rmu_sc0005705.1_g000022
rosa_roxburghii	Rroxscaffold_1G00026490
rosa_rugosa	Rorug05G0286000 Rorug05G0286000
rosa_samantha	Rh5AG356500 Rh5BG368100 Rh5CG391400 Rh5DG382300
rosa_wichuraiana	Rw5G033490 Rw5G033660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	205
AciI	CCGC	7 cut(s)	5, 21, 105, 200, 267, 421, 496
AclWI	GGATC	2 cut(s)	431, 475
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	2 cut(s)	198, 487
AfiI	CCNNNNNNNGG	2 cut(s)	420, 495
AgsI	TTSAA	2 cut(s)	15, 218
AhdI	GACNNNNNGTC	1 cut(s)	393
AloI	GAACNNNNNNTCC	2 cut(s)	452, 484
AluBI	AGCT	5 cut(s)	85, 127, 134, 310, 586
AluI	AGCT	5 cut(s)	85, 127, 134, 310, 586
Alw21I	GWGCWC	1 cut(s)	248
Alw26I	GTCTC	2 cut(s)	133, 230
AlwI	GGATC	2 cut(s)	431, 475
Aor13HI	TCCGGA	1 cut(s)	205
AoxI	GGCC	1 cut(s)	221
ApeKI	GCWGC	2 cut(s)	170, 365
AspS9I	GGNCC	2 cut(s)	221, 395
AsuHPI	GGTGA	1 cut(s)	435
AvaII	GGWCC	1 cut(s)	395
BaeGI	GKGCMC	1 cut(s)	405
BbsI	GAAGAC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	248
BbvI	GCAGC	2 cut(s)	157, 352
BcoDI	GTCTC	2 cut(s)	133, 230
BfaI	CTAG	1 cut(s)	159
BisI	GCNGC	3 cut(s)	171, 366, 497
BlsI	GCNGC	3 cut(s)	172, 367, 498
Bme18I	GGWCC	1 cut(s)	395
BmeRI	GACNNNNNGTC	1 cut(s)	393
BmgT120I	GGNCC	2 cut(s)	221, 395
BmiI	GGNNCC	2 cut(s)	396, 470
BmrI	ACTGGG	1 cut(s)	188
BmsI	GCATC	3 cut(s)	352, 451, 534
BmuI	ACTGGG	1 cut(s)	188
BpiI	GAAGAC	1 cut(s)	144
BpmI	CTGGAG	1 cut(s)	585
BsaI	GGTCTC	1 cut(s)	133
BsaWI	WCCGGW	1 cut(s)	205
BsaXI	ACNNNNNCTCC	2 cut(s)	558, 588
Bsc4I	CCNNNNNNNGG	2 cut(s)	420, 495
Bse1I	ACTGG	1 cut(s)	194
BseAI	TCCGGA	1 cut(s)	205
BseGI	GGATG	3 cut(s)	277, 367, 466
BseLI	CCNNNNNNNGG	2 cut(s)	420, 495
BseMII	CTCAG	1 cut(s)	271
BseNI	ACTGG	1 cut(s)	194
BseSI	GKGCMC	1 cut(s)	405
BseXI	GCAGC	2 cut(s)	157, 352
BshFI	GGCC	1 cut(s)	223
BsiHKAI	GWGCWC	1 cut(s)	248
BsiSI	CCGG	1 cut(s)	206
BslI	CCNNNNNNNGG	2 cut(s)	420, 495
BsmAI	GTCTC	2 cut(s)	133, 230
BsnI	GGCC	1 cut(s)	223
Bso31I	GGTCTC	1 cut(s)	133
Bsp1286I	GDGCHC	2 cut(s)	248, 405
Bsp13I	TCCGGA	1 cut(s)	205
Bsp143I	GATC	3 cut(s)	314, 423, 480
BspACI	CCGC	7 cut(s)	5, 21, 105, 200, 267, 421, 496
BspANI	GGCC	1 cut(s)	223
BspCNI	CTCAG	1 cut(s)	270
BspEI	TCCGGA	1 cut(s)	205
BspLI	GGNNCC	2 cut(s)	396, 470
BspPI	GGATC	2 cut(s)	431, 475
BspTNI	GGTCTC	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	194
BssMI	GATC	3 cut(s)	314, 423, 480
Bst4CI	ACNGT	2 cut(s)	150, 431
Bst6I	CTCTTC	2 cut(s)	45, 94
BstC8I	GCNNGC	1 cut(s)	350
BstDEI	CTNAG	2 cut(s)	257, 311
BstF5I	GGATG	3 cut(s)	277, 367, 466
BstKTI	GATC	3 cut(s)	317, 426, 483
BstMAI	GTCTC	2 cut(s)	133, 230
BstMBI	GATC	3 cut(s)	314, 423, 480
BstSLI	GKGCMC	1 cut(s)	405
BstV1I	GCAGC	2 cut(s)	157, 352
BstV2I	GAAGAC	1 cut(s)	144
BstX2I	RGATCY	2 cut(s)	423, 480
BstYI	RGATCY	2 cut(s)	423, 480
BsuRI	GGCC	1 cut(s)	223
BtsCI	GGATG	3 cut(s)	277, 367, 466
BtsIMutI	CAGTG	1 cut(s)	146
Cac8I	GCNNGC	1 cut(s)	350
Cfr13I	GGNCC	2 cut(s)	221, 395
Csp6I	GTAC	2 cut(s)	197, 486
CviAII	CATG	1 cut(s)	449
CviJI	RGCY	9 cut(s)	85, 127, 134, 192, 223, 310, 499, 524, 586
CviKI_1	RGCY	9 cut(s)	85, 127, 134, 192, 223, 310, 499, 524, 586
CviQI	GTAC	2 cut(s)	197, 486
DdeI	CTNAG	2 cut(s)	257, 311
DpnI	GATC	3 cut(s)	316, 425, 482
DpnII	GATC	3 cut(s)	314, 423, 480
DriI	GACNNNNNGTC	1 cut(s)	393
Eam1104I	CTCTTC	2 cut(s)	45, 94
Eam1105I	GACNNNNNGTC	1 cut(s)	393
EarI	CTCTTC	2 cut(s)	45, 94
Eco31I	GGTCTC	1 cut(s)	133
Eco47I	GGWCC	1 cut(s)	395
Eco57I	CTGAAG	1 cut(s)	198
EcoO109I	RGGNCCY	2 cut(s)	221, 395
FaeI	CATG	1 cut(s)	452
FaiI	YATR	5 cut(s)	77, 168, 319, 392, 450
FatI	CATG	1 cut(s)	448
FauI	CCCGC	2 cut(s)	112, 260
Fnu4HI	GCNGC	3 cut(s)	171, 366, 497
FokI	GGATG	3 cut(s)	284, 374, 473
Fsp4HI	GCNGC	3 cut(s)	171, 366, 497
FspBI	CTAG	1 cut(s)	159
GluI	GCNGC	3 cut(s)	171, 366, 497
GsuI	CTGGAG	1 cut(s)	585
HaeIII	GGCC	1 cut(s)	223
HapII	CCGG	1 cut(s)	206
Hin1II	CATG	1 cut(s)	452
HindIII	AAGCTT	2 cut(s)	125, 308
HinfI	GANTC	4 cut(s)	238, 341, 536, 567
HpaII	CCGG	1 cut(s)	206
HphI	GGTGA	1 cut(s)	435
Hpy166II	GTNNAC	1 cut(s)	454
Hpy188I	TCNGA	4 cut(s)	232, 243, 333, 438
Hpy188III	TCNNGA	2 cut(s)	176, 206
Hpy8I	GTNNAC	1 cut(s)	454
HpyAV	CCTTC	4 cut(s)	45, 78, 212, 566
HpyCH4III	ACNGT	2 cut(s)	150, 431
HpyCH4V	TGCA	5 cut(s)	348, 368, 383, 464, 547
HpyF3I	CTNAG	2 cut(s)	257, 311
Hsp92II	CATG	1 cut(s)	452
Kpn2I	TCCGGA	1 cut(s)	205
Kzo9I	GATC	3 cut(s)	314, 423, 480
LmnI	GCTCC	1 cut(s)	178
LpnPI	CCDG	7 cut(s)	189, 207, 219, 411, 506, 549, 573
Lsp1109I	GCAGC	2 cut(s)	157, 352
LweI	GCATC	3 cut(s)	352, 451, 534
MaeI	CTAG	1 cut(s)	159
MaeIII	GTNAC	1 cut(s)	252
MalI	GATC	3 cut(s)	316, 425, 482
MboI	GATC	3 cut(s)	314, 423, 480
MboII	GAAGA	5 cut(s)	3, 32, 81, 144, 307
MfeI	CAATTG	1 cut(s)	531
MflI	RGATCY	2 cut(s)	423, 480
MhlI	GDGCHC	2 cut(s)	248, 405
MluCI	AATT	5 cut(s)	15, 30, 52, 226, 531
MlyI	GAGTC	2 cut(s)	232, 576
MnlI	CCTC	8 cut(s)	54, 67, 82, 154, 213, 331, 339, 571
MroI	TCCGGA	1 cut(s)	205
MseI	TTAA	1 cut(s)	306
MslI	CAYNNNNRTG	1 cut(s)	459
MspA1I	CMGCKG	1 cut(s)	496
MspI	CCGG	1 cut(s)	206
MunI	CAATTG	1 cut(s)	531
NdeII	GATC	3 cut(s)	314, 423, 480
NlaIII	CATG	1 cut(s)	452
NlaIV	GGNNCC	2 cut(s)	396, 470
NmuCI	GTSAC	1 cut(s)	252
PfeI	GAWTC	2 cut(s)	341, 536
PkrI	GCNGC	3 cut(s)	172, 367, 498
PleI	GAGTC	2 cut(s)	232, 575
PpsI	GAGTC	2 cut(s)	232, 575
PpuMI	RGGWCCY	1 cut(s)	395
Psp5II	RGGWCCY	1 cut(s)	395
PspN4I	GGNNCC	2 cut(s)	396, 470
PspPI	GGNCC	2 cut(s)	221, 395
PspPPI	RGGWCCY	1 cut(s)	395
PsuI	RGATCY	2 cut(s)	423, 480
RsaI	GTAC	2 cut(s)	198, 487
RsaNI	GTAC	2 cut(s)	197, 486
RseI	CAYNNNNRTG	1 cut(s)	459
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	3 cut(s)	171, 366, 497
Sau3AI	GATC	3 cut(s)	314, 423, 480
Sau96I	GGNCC	2 cut(s)	221, 395
SchI	GAGTC	2 cut(s)	232, 576
SduI	GDGCHC	2 cut(s)	248, 405
SetI	ASST	8 cut(s)	87, 129, 136, 312, 470, 558, 582, 588
SfaNI	GCATC	3 cut(s)	352, 451, 534
SinI	GGWCC	1 cut(s)	395
SmiMI	CAYNNNNRTG	1 cut(s)	459
Sse9I	AATT	5 cut(s)	15, 30, 52, 226, 531
SsiI	CCGC	7 cut(s)	5, 21, 105, 200, 267, 421, 496
SspMI	CTAG	1 cut(s)	159
TaaI	ACNGT	2 cut(s)	150, 431
TaqI	TCGA	2 cut(s)	130, 570
TasI	AATT	5 cut(s)	15, 30, 52, 226, 531
TauI	GCSGC	1 cut(s)	499
TfiI	GAWTC	2 cut(s)	341, 536
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	1 cut(s)	153
TseFI	GTSAC	1 cut(s)	252
TseI	GCWGC	2 cut(s)	170, 365
Tsp45I	GTSAC	1 cut(s)	252
TspGWI	ACGGA	1 cut(s)	473
TspRI	CASTG	1 cut(s)	153
VpaK11BI	GGWCC	1 cut(s)	395
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.