Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0010010

Physical Location & Seq

Genomic Coordinates Forward (+)

15085115 .. 15087602

Gene Structure 2488 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g13930.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGTTTGGAAGTGCTTTTAAAAAAACAAGCACTTTTAAATCACCTGAAGTGTTTTTGGCCATGTTTTGGCAGAAAAAAGTAGGAGTGCTTATAGGTGGAAAAAATTACTTTGAAGTGCTTGTTGAAAGAAGTTGTGTGCTTCTTTTACAAACCCAAACTACAAACCACGATAAAAACAAAAACAAAAAAATAAAAATATTTTGGATAATTCTACAATCTACAGGCAGCGTGAGCAAAACAGAGCCCTTCTTCTTTACACGGAGGGAAAAAGAGAGAGAGAGAGAGAGAGAGAGACCGAGTTCCATTTCAATGGCAGTTTCTTCCATGTCTTCAATCCTAATTCCTTCACTTCCTCTCTCCAATTCTTCTGCATTTCCGACTTCCAAGCCAAAGCTTTCTTCTTTCGCTTTGCCCTCGGCCAACAATGCCTTAAAGCTCAGAGCTTCCAGACCCTCACAGTCATCCACTAGGGTTTATGCCGCTCCTGAAGTCTTGGAGTCCCAGGAAACCCTAATCCCACCTCCAGAAACCCTCGAGGTTGGAAGTTCTGAGACCCCGAGTACTTCATCACTCAGTATTGGTGGAGATGGAGATAAGGCCTCACCGAAGCAGAAAATCAGGATTAAACTGAGGTCTTACTTTGTGCCATTGATAGAAGATTCCTGCAAGCAGATAATGGATGCTGCTAGGAACACAAATGCAAAAACAATGGGTCCTGTACCCTTGCCAACTAAAAAGCGAATCTACTGTGTTCTCAAATCTCCCCATGTCCACAAGGATGCAAGGTTCCATTTTGAGATTCGTACCCACCAACGCCTCATTGATATTCTATACCCAACTGCACAAACAATAGATTCCTTAATGCAACTTGACCTTCCTGCTGGAGTTGATGTGGAGGTCAAACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

303

Amino Acids

33.76

Weight (kDa)

9.8

Isoelectric Point (pI)

57.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13120 AT3G13120 AT3G13120
fragaria_vesca	FvH4_3g29500
malus_domestica	MD03G1187000.v1.1 MD11G1202000.v1.1
prunus_persica	Prupe.4G239600_v2.0.a1
pyrus_communis	pycom03g13930 pycom11g17450
rosa_chinensis	RchiOBHm_Chr5g0054381
rosa_laevigata	RLG00000034928
rosa_multiflora	Rmu_sc0005705.1_g000022
rosa_roxburghii	Rroxscaffold_1G00026490
rosa_rugosa	Rorug05G0286000 Rorug05G0286000
rosa_samantha	Rh5AG356500 Rh5BG368100 Rh5CG391400 Rh5DG382300
rosa_wichuraiana	Rw5G033490 Rw5G033660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	533
AccB7I	CCANNNNNTGG	1 cut(s)	66
AccBSI	CCGCTC	1 cut(s)	482
AciI	CCGC	1 cut(s)	480
AcoI	YGGCCR	2 cut(s)	57, 417
AcuI	CTGAAG	2 cut(s)	66, 507
AfaI	GTAC	3 cut(s)	562, 720, 805
AfiI	CCNNNNNNNGG	1 cut(s)	66
AgsI	TTSAA	4 cut(s)	113, 125, 309, 333
AjnI	CCWGG	1 cut(s)	501
AjuI	GAANNNNNNNTTGG	2 cut(s)	382, 414
AloI	GAACNNNNNNTCC	2 cut(s)	770, 802
AluBI	AGCT	3 cut(s)	394, 436, 443
AluI	AGCT	3 cut(s)	394, 436, 443
Alw26I	GTCTC	2 cut(s)	286, 545
Ama87I	CYCGRG	2 cut(s)	533, 556
AoxI	GGCC	3 cut(s)	57, 417, 597
ApeKI	GCWGC	2 cut(s)	225, 683
AspS9I	GGNCC	1 cut(s)	713
AsuHPI	GGTGA	2 cut(s)	33, 594
AvaI	CYCGRG	2 cut(s)	533, 556
AvaII	GGWCC	1 cut(s)	713
BalI	TGGCCA	1 cut(s)	59
BanII	GRGCYC	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	321
BbvI	GCAGC	2 cut(s)	237, 670
BccI	CCATC	1 cut(s)	581
BciT130I	CCWGG	1 cut(s)	503
BcoDI	GTCTC	2 cut(s)	286, 545
BfaI	CTAG	2 cut(s)	468, 687
BfmI	CTRYAG	1 cut(s)	219
BisI	GCNGC	3 cut(s)	226, 480, 684
BlsI	GCNGC	3 cut(s)	227, 481, 685
BmcAI	AGTACT	1 cut(s)	562
Bme1390I	CCNGG	1 cut(s)	503
Bme18I	GGWCC	1 cut(s)	713
BmeT110I	CYCGRG	2 cut(s)	533, 556
BmgT120I	GGNCC	1 cut(s)	713
BmiI	GGNNCC	2 cut(s)	714, 788
BmrFI	CCNGG	1 cut(s)	503
BmsI	GCATC	2 cut(s)	670, 769
BpiI	GAAGAC	1 cut(s)	321
BpmI	CTGGAG	2 cut(s)	507, 903
BsaI	GGTCTC	2 cut(s)	286, 545
BsaJI	CCNNGG	2 cut(s)	414, 501
BsaXI	ACNNNNNCTCC	2 cut(s)	876, 906
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	503
BseDI	CCNNGG	2 cut(s)	414, 501
BseGI	GGATG	3 cut(s)	461, 685, 784
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseMII	CTCAG	4 cut(s)	451, 540, 586, 620
BseXI	GCAGC	2 cut(s)	237, 670
BsgI	GTGCAG	1 cut(s)	825
BshFI	GGCC	3 cut(s)	59, 419, 599
BsiHKCI	CYCGRG	2 cut(s)	533, 556
BslFI	GGGAC	1 cut(s)	484
BslI	CCNNNNNNNGG	1 cut(s)	66
BsmAI	GTCTC	2 cut(s)	286, 545
BsmFI	GGGAC	1 cut(s)	484
BsnI	GGCC	3 cut(s)	59, 419, 599
Bso31I	GGTCTC	2 cut(s)	286, 545
BsoBI	CYCGRG	2 cut(s)	533, 556
Bsp1286I	GDGCHC	1 cut(s)	246
BspACI	CCGC	1 cut(s)	480
BspANI	GGCC	3 cut(s)	59, 419, 599
BspCNI	CTCAG	4 cut(s)	450, 541, 585, 621
BspLI	GGNNCC	2 cut(s)	714, 788
BspTNI	GGTCTC	2 cut(s)	286, 545
BsrBI	CCGCTC	1 cut(s)	482
BssECI	CCNNGG	2 cut(s)	414, 501
Bst2UI	CCWGG	1 cut(s)	503
Bst4CI	ACNGT	3 cut(s)	459, 749, 906
BstC8I	GCNNGC	1 cut(s)	668
BstDEI	CTNAG	4 cut(s)	437, 549, 572, 629
BstF5I	GGATG	3 cut(s)	461, 685, 784
BstMAI	GTCTC	2 cut(s)	286, 545
BstMWI	GCNNNNNNNGC	2 cut(s)	231, 425
BstNI	CCWGG	1 cut(s)	503
BstSCI	CCNGG	1 cut(s)	501
BstSFI	CTRYAG	1 cut(s)	219
BstV1I	GCAGC	2 cut(s)	237, 670
BstV2I	GAAGAC	1 cut(s)	321
BstXI	CCANNNNNNTGG	1 cut(s)	310
BsuRI	GGCC	3 cut(s)	59, 419, 599
BtsCI	GGATG	3 cut(s)	461, 685, 784
Cac8I	GCNNGC	1 cut(s)	668
Cfr13I	GGNCC	1 cut(s)	713
Csp6I	GTAC	3 cut(s)	561, 719, 804
CviAII	CATG	3 cut(s)	61, 325, 767
CviJI	RGCY	8 cut(s)	59, 244, 388, 394, 419, 436, 443, 599
CviKI_1	RGCY	8 cut(s)	59, 244, 388, 394, 419, 436, 443, 599
CviQI	GTAC	3 cut(s)	561, 719, 804
DdeI	CTNAG	4 cut(s)	437, 549, 572, 629
DraI	TTTAAA	2 cut(s)	19, 37
EaeI	YGGCCR	2 cut(s)	57, 417
Eco147I	AGGCCT	1 cut(s)	599
Eco24I	GRGCYC	1 cut(s)	246
Eco31I	GGTCTC	2 cut(s)	286, 545
Eco47I	GGWCC	1 cut(s)	713
Eco57I	CTGAAG	2 cut(s)	66, 507
Eco88I	CYCGRG	2 cut(s)	533, 556
EcoO109I	RGGNCCY	1 cut(s)	713
EcoRII	CCWGG	1 cut(s)	501
EcoT38I	GRGCYC	1 cut(s)	246
FaeI	CATG	3 cut(s)	64, 328, 770
FaiI	YATR	6 cut(s)	62, 92, 326, 477, 768, 832
FaqI	GGGAC	1 cut(s)	484
FatI	CATG	3 cut(s)	60, 324, 766
Fnu4HI	GCNGC	3 cut(s)	226, 480, 684
FokI	GGATG	3 cut(s)	448, 692, 791
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	3 cut(s)	226, 480, 684
FspBI	CTAG	2 cut(s)	468, 687
GluI	GCNGC	3 cut(s)	226, 480, 684
GsuI	CTGGAG	2 cut(s)	507, 903
HaeIII	GGCC	3 cut(s)	59, 419, 599
Hin1II	CATG	3 cut(s)	64, 328, 770
HindIII	AAGCTT	1 cut(s)	392
HinfI	GANTC	5 cut(s)	497, 659, 741, 799, 854
HphI	GGTGA	2 cut(s)	33, 594
Hpy166II	GTNNAC	1 cut(s)	772
Hpy188I	TCNGA	3 cut(s)	378, 440, 550
Hpy188III	TCNNGA	4 cut(s)	447, 485, 524, 619
Hpy8I	GTNNAC	1 cut(s)	772
HpyAV	CCTTC	3 cut(s)	256, 354, 884
HpyCH4III	ACNGT	3 cut(s)	459, 749, 906
HpyCH4V	TGCA	6 cut(s)	371, 666, 701, 782, 842, 865
HpyF10VI	GCNNNNNNNGC	2 cut(s)	231, 425
HpyF3I	CTNAG	4 cut(s)	437, 549, 572, 629
Hsp92II	CATG	3 cut(s)	64, 328, 770
LmnI	GCTCC	1 cut(s)	487
Lsp1109I	GCAGC	2 cut(s)	237, 670
LweI	GCATC	2 cut(s)	670, 769
MaeI	CTAG	2 cut(s)	468, 687
MbiI	CCGCTC	1 cut(s)	482
MboII	GAAGA	6 cut(s)	241, 312, 321, 357, 390, 668
MhlI	GDGCHC	1 cut(s)	246
MlsI	TGGCCA	1 cut(s)	59
MluCI	AATT	4 cut(s)	103, 207, 339, 361
MluNI	TGGCCA	1 cut(s)	59
MlyI	GAGTC	1 cut(s)	506
MmeI	TCCRAC	2 cut(s)	401, 520
Mox20I	TGGCCA	1 cut(s)	59
MscI	TGGCCA	1 cut(s)	59
MseI	TTAA	5 cut(s)	18, 36, 431, 624, 860
MslI	CAYNNNNRTG	2 cut(s)	308, 777
Msp20I	TGGCCA	1 cut(s)	59
MspR9I	CCNGG	1 cut(s)	503
MvaI	CCWGG	1 cut(s)	503
MwoI	GCNNNNNNNGC	2 cut(s)	231, 425
NlaIII	CATG	3 cut(s)	64, 328, 770
NlaIV	GGNNCC	2 cut(s)	714, 788
NmeAIII	GCCGAG	1 cut(s)	395
PaeR7I	CTCGAG	1 cut(s)	533
PceI	AGGCCT	1 cut(s)	599
PfeI	GAWTC	4 cut(s)	659, 741, 799, 854
PflMI	CCANNNNNTGG	1 cut(s)	66
PkrI	GCNGC	3 cut(s)	227, 481, 685
PleI	GAGTC	1 cut(s)	505
PpsI	GAGTC	1 cut(s)	505
PpuMI	RGGWCCY	1 cut(s)	713
Psp5II	RGGWCCY	1 cut(s)	713
Psp6I	CCWGG	1 cut(s)	501
PspGI	CCWGG	1 cut(s)	501
PspN4I	GGNNCC	2 cut(s)	714, 788
PspPI	GGNCC	1 cut(s)	713
PspPPI	RGGWCCY	1 cut(s)	713
PspXI	VCTCGAGB	1 cut(s)	533
RsaI	GTAC	3 cut(s)	562, 720, 805
RsaNI	GTAC	3 cut(s)	561, 719, 804
RseI	CAYNNNNRTG	2 cut(s)	308, 777
SaqAI	TTAA	5 cut(s)	18, 36, 431, 624, 860
SatI	GCNGC	3 cut(s)	226, 480, 684
Sau96I	GGNCC	1 cut(s)	713
ScaI	AGTACT	1 cut(s)	562
SchI	GAGTC	1 cut(s)	506
ScrFI	CCNGG	1 cut(s)	503
SduI	GDGCHC	1 cut(s)	246
SfaNI	GCATC	2 cut(s)	670, 769
SfcI	CTRYAG	1 cut(s)	219
Sfr274I	CTCGAG	1 cut(s)	533
SinI	GGWCC	1 cut(s)	713
SlaI	CTCGAG	1 cut(s)	533
SmiMI	CAYNNNNRTG	2 cut(s)	308, 777
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
Sse9I	AATT	4 cut(s)	103, 207, 339, 361
SseBI	AGGCCT	1 cut(s)	599
SsiI	CCGC	1 cut(s)	480
SspI	AATATT	1 cut(s)	198
SspMI	CTAG	2 cut(s)	468, 687
StuI	AGGCCT	1 cut(s)	599
StyD4I	CCNGG	1 cut(s)	501
TaaI	ACNGT	3 cut(s)	459, 749, 906
TaqI	TCGA	1 cut(s)	534
TaqII	GACCGA	1 cut(s)	310
TasI	AATT	4 cut(s)	103, 207, 339, 361
TatI	WGTACW	1 cut(s)	560
TauI	GCSGC	1 cut(s)	482
TfiI	GAWTC	4 cut(s)	659, 741, 799, 854
Tru1I	TTAA	5 cut(s)	18, 36, 431, 624, 860
Tru9I	TTAA	5 cut(s)	18, 36, 431, 624, 860
TseI	GCWGC	2 cut(s)	225, 683
TspDTI	ATGAA	1 cut(s)	555
TspGWI	ACGGA	1 cut(s)	274
Van91I	CCANNNNNTGG	1 cut(s)	66
VpaK11BI	GGWCC	1 cut(s)	713
XhoI	CTCGAG	1 cut(s)	533
XspI	CTAG	2 cut(s)	468, 687
ZrmI	AGTACT	1 cut(s)	562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.