Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0010010

Physical Location & Seq

Genomic Coordinates Forward (+)

58460999 .. 58464382

Gene Structure 3384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG382300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGCGGTTTCTTCAATTTCCGCAACCCTAATTCCTTCTCTTCCCCTCTCCAATTCTTCTCCATTTCCTTCCTCTAAAGCCAAGCTCACTTCTTTCTCTTTGCCCGCTTCCCACAATGCCACAAAGCTTCCAGCTTTGAGACCCTCACTGTCGTCATCCACTAGGGTTTATGCTGCTCCTGAAGTCCTCGATAGCCCAGTTCCGCCTCCAGAAATCCTTCAAGGGCCCAATTCCGACGAGACTCCGAGCACTTCGTCACTCAGCATTGGTGGGGATGATAAGATAACACCGAAGCAGAAGATTAGGATTAAGCTTAGATCGTACTTTGTGCCTCTGATAGAGGATTCTTGCAAGCAGATAATGGATGCTGCAAGGAACACAAATGCAAAGACTATGGGCCCTGTGCCCTTACCAACCAAAAAGCGGATCTACTGTGTTCTGAAATCACCCCATGTCCACAAGGATGCAAGGTTCCATTTTGAGATCCGTACCCACCAGCGACTTATTGACATTCTTTACCCAACTGCCCAGACGATCGATTCCTTGATGCAACTTGACCTTCCTGCTGGAGTTGATGTTGAGGTCAAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

197

Amino Acids

21.45

Weight (kDa)

9.39

Isoelectric Point (pI)

66.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S10	PF00338	102 - 196	1.4e-33	Ribosomal protein S10p/S20e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13120 AT3G13120 AT3G13120
fragaria_vesca	FvH4_3g29500
malus_domestica	MD03G1187000.v1.1 MD11G1202000.v1.1
prunus_persica	Prupe.4G239600_v2.0.a1
pyrus_communis	pycom03g13930 pycom11g17450
rosa_chinensis	RchiOBHm_Chr5g0054381
rosa_laevigata	RLG00000034928
rosa_multiflora	Rmu_sc0005705.1_g000022
rosa_roxburghii	Rroxscaffold_1G00026490
rosa_rugosa	Rorug05G0286000 Rorug05G0286000
rosa_samantha	Rh5AG356500 Rh5BG368100 Rh5CG391400 Rh5DG382300
rosa_wichuraiana	Rw5G033490 Rw5G033660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	5, 21, 105, 203, 424
AclWI	GGATC	2 cut(s)	434, 478
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	2 cut(s)	323, 490
AfiI	CCNNNNNNNGG	1 cut(s)	423
AgsI	TTSAA	2 cut(s)	15, 221
AloI	GAACNNNNNNTCC	2 cut(s)	455, 487
AluBI	AGCT	5 cut(s)	85, 127, 134, 313, 589
AluI	AGCT	5 cut(s)	85, 127, 134, 313, 589
Alw21I	GWGCWC	1 cut(s)	251
Alw26I	GTCTC	2 cut(s)	133, 233
AlwI	GGATC	2 cut(s)	434, 478
AoxI	GGCC	2 cut(s)	224, 397
ApaI	GGGCCC	2 cut(s)	228, 401
ApeKI	GCWGC	2 cut(s)	173, 368
Asp700I	GAANNNNTTC	1 cut(s)	216
AspS9I	GGNCC	4 cut(s)	224, 225, 397, 398
AsuHPI	GGTGA	1 cut(s)	438
BaeGI	GKGCMC	3 cut(s)	228, 401, 408
BanII	GRGCYC	2 cut(s)	228, 401
Bbv12I	GWGCWC	1 cut(s)	251
BbvI	GCAGC	2 cut(s)	160, 355
BcoDI	GTCTC	2 cut(s)	133, 233
BfaI	CTAG	1 cut(s)	162
BisI	GCNGC	2 cut(s)	174, 369
BlsI	GCNGC	2 cut(s)	175, 370
BmgT120I	GGNCC	4 cut(s)	224, 225, 397, 398
BmiI	GGNNCC	3 cut(s)	226, 399, 473
BmrI	ACTGGG	1 cut(s)	191
BmsI	GCATC	3 cut(s)	355, 454, 537
BmuI	ACTGGG	1 cut(s)	191
BpmI	CTGGAG	2 cut(s)	192, 588
Bsa29I	ATCGAT	1 cut(s)	537
BsaI	GGTCTC	1 cut(s)	133
BsaXI	ACNNNNNCTCC	2 cut(s)	561, 591
Bsc4I	CCNNNNNNNGG	1 cut(s)	423
Bse1I	ACTGG	1 cut(s)	197
BseCI	ATCGAT	1 cut(s)	537
BseGI	GGATG	4 cut(s)	155, 280, 370, 469
BseLI	CCNNNNNNNGG	1 cut(s)	423
BseMII	CTCAG	1 cut(s)	274
BseNI	ACTGG	1 cut(s)	197
BseSI	GKGCMC	3 cut(s)	228, 401, 408
BseXI	GCAGC	2 cut(s)	160, 355
Bsh1285I	CGRYCG	1 cut(s)	537
BshFI	GGCC	2 cut(s)	226, 399
BshVI	ATCGAT	1 cut(s)	537
BsiEI	CGRYCG	1 cut(s)	537
BsiHKAI	GWGCWC	1 cut(s)	251
BslI	CCNNNNNNNGG	1 cut(s)	423
BsmAI	GTCTC	2 cut(s)	133, 233
BsnI	GGCC	2 cut(s)	226, 399
Bso31I	GGTCTC	1 cut(s)	133
Bsp120I	GGGCCC	2 cut(s)	224, 397
Bsp1286I	GDGCHC	4 cut(s)	228, 251, 401, 408
Bsp143I	GATC	4 cut(s)	317, 426, 483, 534
BspACI	CCGC	5 cut(s)	5, 21, 105, 203, 424
BspANI	GGCC	2 cut(s)	226, 399
BspCNI	CTCAG	1 cut(s)	273
BspDI	ATCGAT	1 cut(s)	537
BspLI	GGNNCC	3 cut(s)	226, 399, 473
BspPI	GGATC	2 cut(s)	434, 478
BspTNI	GGTCTC	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	197
BssMI	GATC	4 cut(s)	317, 426, 483, 534
Bst4CI	ACNGT	2 cut(s)	150, 434
Bst6I	CTCTTC	1 cut(s)	45
BstC8I	GCNNGC	2 cut(s)	105, 353
BstDEI	CTNAG	2 cut(s)	260, 314
BstF5I	GGATG	4 cut(s)	155, 280, 370, 469
BstKTI	GATC	4 cut(s)	320, 429, 486, 537
BstMAI	GTCTC	2 cut(s)	133, 233
BstMBI	GATC	4 cut(s)	317, 426, 483, 534
BstMCI	CGRYCG	1 cut(s)	537
BstSLI	GKGCMC	3 cut(s)	228, 401, 408
BstV1I	GCAGC	2 cut(s)	160, 355
BstX2I	RGATCY	2 cut(s)	426, 483
BstYI	RGATCY	2 cut(s)	426, 483
Bsu15I	ATCGAT	1 cut(s)	537
BsuRI	GGCC	2 cut(s)	226, 399
BsuTUI	ATCGAT	1 cut(s)	537
BtsCI	GGATG	4 cut(s)	155, 280, 370, 469
BtsIMutI	CAGTG	1 cut(s)	146
Cac8I	GCNNGC	2 cut(s)	105, 353
Cfr13I	GGNCC	4 cut(s)	224, 225, 397, 398
ClaI	ATCGAT	1 cut(s)	537
Csp6I	GTAC	2 cut(s)	322, 489
CviAII	CATG	1 cut(s)	452
CviJI	RGCY	9 cut(s)	80, 85, 127, 134, 195, 226, 313, 399, 589
CviKI_1	RGCY	9 cut(s)	80, 85, 127, 134, 195, 226, 313, 399, 589
CviQI	GTAC	2 cut(s)	322, 489
DdeI	CTNAG	2 cut(s)	260, 314
DpnI	GATC	4 cut(s)	319, 428, 485, 536
DpnII	GATC	4 cut(s)	317, 426, 483, 534
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
EciI	GGCGGA	1 cut(s)	192
Eco24I	GRGCYC	2 cut(s)	228, 401
Eco31I	GGTCTC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	201
EcoO109I	RGGNCCY	2 cut(s)	224, 398
EcoT38I	GRGCYC	2 cut(s)	228, 401
FaeI	CATG	1 cut(s)	455
FaiI	YATR	3 cut(s)	171, 395, 453
FatI	CATG	1 cut(s)	451
FauI	CCCGC	1 cut(s)	112
Fnu4HI	GCNGC	2 cut(s)	174, 369
FokI	GGATG	4 cut(s)	142, 287, 377, 476
FriOI	GRGCYC	2 cut(s)	228, 401
Fsp4HI	GCNGC	2 cut(s)	174, 369
FspBI	CTAG	1 cut(s)	162
GluI	GCNGC	2 cut(s)	174, 369
GsuI	CTGGAG	2 cut(s)	192, 588
HaeIII	GGCC	2 cut(s)	226, 399
Hin1II	CATG	1 cut(s)	455
HindIII	AAGCTT	3 cut(s)	125, 311, 587
HinfI	GANTC	3 cut(s)	241, 344, 539
HphI	GGTGA	1 cut(s)	438
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188I	TCNGA	4 cut(s)	235, 246, 336, 441
Hpy188III	TCNNGA	2 cut(s)	179, 209
Hpy8I	GTNNAC	1 cut(s)	457
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	4 cut(s)	45, 78, 227, 569
HpyCH4III	ACNGT	2 cut(s)	150, 434
HpyCH4V	TGCA	5 cut(s)	351, 371, 386, 467, 550
HpyF3I	CTNAG	2 cut(s)	260, 314
Hsp92II	CATG	1 cut(s)	455
Kzo9I	GATC	4 cut(s)	317, 426, 483, 534
LmnI	GCTCC	1 cut(s)	181
LpnPI	CCDG	9 cut(s)	144, 192, 210, 222, 414, 509, 542, 552, 576
Lsp1109I	GCAGC	2 cut(s)	160, 355
LweI	GCATC	3 cut(s)	355, 454, 537
MaeI	CTAG	1 cut(s)	162
MaeIII	GTNAC	1 cut(s)	255
MalI	GATC	4 cut(s)	319, 428, 485, 536
MboI	GATC	4 cut(s)	317, 426, 483, 534
MboII	GAAGA	4 cut(s)	3, 32, 48, 310
MflI	RGATCY	2 cut(s)	426, 483
MhlI	GDGCHC	4 cut(s)	228, 251, 401, 408
MluCI	AATT	4 cut(s)	15, 30, 52, 229
MlyI	GAGTC	1 cut(s)	235
MmeI	TCCRAC	1 cut(s)	258
MnlI	CCTC	8 cut(s)	56, 82, 154, 197, 216, 334, 342, 574
MroXI	GAANNNNTTC	1 cut(s)	216
MseI	TTAA	1 cut(s)	309
MslI	CAYNNNNRTG	1 cut(s)	462
NdeII	GATC	4 cut(s)	317, 426, 483, 534
NlaIII	CATG	1 cut(s)	455
NlaIV	GGNNCC	3 cut(s)	226, 399, 473
NmuCI	GTSAC	1 cut(s)	255
PdmI	GAANNNNTTC	1 cut(s)	216
PfeI	GAWTC	2 cut(s)	344, 539
PkrI	GCNGC	2 cut(s)	175, 370
Ple19I	CGATCG	1 cut(s)	537
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
PspN4I	GGNNCC	3 cut(s)	226, 399, 473
PspOMI	GGGCCC	2 cut(s)	224, 397
PspPI	GGNCC	4 cut(s)	224, 225, 397, 398
PsuI	RGATCY	2 cut(s)	426, 483
PvuI	CGATCG	1 cut(s)	537
RsaI	GTAC	2 cut(s)	323, 490
RsaNI	GTAC	2 cut(s)	322, 489
RseI	CAYNNNNRTG	1 cut(s)	462
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	2 cut(s)	174, 369
Sau3AI	GATC	4 cut(s)	317, 426, 483, 534
Sau96I	GGNCC	4 cut(s)	224, 225, 397, 398
SchI	GAGTC	1 cut(s)	235
SduI	GDGCHC	4 cut(s)	228, 251, 401, 408
SetI	ASST	8 cut(s)	87, 129, 136, 315, 473, 561, 585, 591
SfaNI	GCATC	3 cut(s)	355, 454, 537
SmiMI	CAYNNNNRTG	1 cut(s)	462
Sse9I	AATT	4 cut(s)	15, 30, 52, 229
SsiI	CCGC	5 cut(s)	5, 21, 105, 203, 424
SspMI	CTAG	1 cut(s)	162
TaaI	ACNGT	2 cut(s)	150, 434
TaqI	TCGA	2 cut(s)	189, 537
TasI	AATT	4 cut(s)	15, 30, 52, 229
TfiI	GAWTC	2 cut(s)	344, 539
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	1 cut(s)	153
TseFI	GTSAC	1 cut(s)	255
TseI	GCWGC	2 cut(s)	173, 368
Tsp45I	GTSAC	1 cut(s)	255
TspGWI	ACGGA	1 cut(s)	476
TspRI	CASTG	1 cut(s)	153
XmnI	GAANNNNTTC	1 cut(s)	216
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.