Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0010010

Physical Location & Seq

Genomic Coordinates Forward (+)

29228398 .. 29231068

Gene Structure 2671 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1202000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGCAGTTTCTTCAATGTCTACAATCCTAATCCCTTCTCTTCCGCTCTCCAAATCTACTGCATCTCCGACTTCCAAGCCAAAGCTCTCTTCTTTCTCTTTGCCCTCGGCCAACAGTGCCTTAAAGGTCAGAGCTTCAAGACCCTCGCAGTCATCCACTAGGGTTTATGCTGCTCCCGAAGTCCTCGAGTCCCCAGAAACCCTAGTCCCACCTCCAGAAACCCTTGAGGTTGGAAGTTCTGAGACCCCAAGCACTTCATCACTCAGTATTGGTGGAGATGGAGATAAGGCCTCACCCAAGCAGAAAATCAGAATTAAATTGAGGTCTTACTTTGTGCCTTTGATAGAAGATTCCTGCAAGCAGATCATGGATGCTGCAAGGAACACGAATGCAAAAACAATGGGTCCTGTACCCTTACCGACCAAAAAGCGAATCTACTGTGTTCTCAAGTCACCCCATGTCCACAAGGATGCCAGGTTTCATTTTGAGATTCGTACCCACCAACGCCTCATTGATATTCTATACCCAACTGCACAAACAATAGATTCCTTGATGCAACTTGACCTTCCTGCTGGAGTTGATGTGGAGGTCAAGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

200

Amino Acids

21.59

Weight (kDa)

9.49

Isoelectric Point (pI)

64.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S10	PF00338	104 - 198	1.4e-33	Ribosomal protein S10p/S20e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13120 AT3G13120 AT3G13120
fragaria_vesca	FvH4_3g29500
malus_domestica	MD03G1187000.v1.1 MD11G1202000.v1.1
prunus_persica	Prupe.4G239600_v2.0.a1
pyrus_communis	pycom03g13930 pycom11g17450
rosa_chinensis	RchiOBHm_Chr5g0054381
rosa_laevigata	RLG00000034928
rosa_multiflora	Rmu_sc0005705.1_g000022
rosa_roxburghii	Rroxscaffold_1G00026490
rosa_rugosa	Rorug05G0286000 Rorug05G0286000
rosa_samantha	Rh5AG356500 Rh5BG368100 Rh5CG391400 Rh5DG382300
rosa_wichuraiana	Rw5G033490 Rw5G033660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	46
AccI	GTMKAC	1 cut(s)	20
AciI	CCGC	1 cut(s)	44
AcoI	YGGCCR	1 cut(s)	108
AfaI	GTAC	2 cut(s)	411, 496
AgsI	TTSAA	2 cut(s)	15, 138
AjnI	CCWGG	1 cut(s)	473
AjuI	GAANNNNNNNTTGG	2 cut(s)	73, 105
AluBI	AGCT	2 cut(s)	85, 134
AluI	AGCT	2 cut(s)	85, 134
Alw26I	GTCTC	1 cut(s)	236
Ama87I	CYCGRG	1 cut(s)	185
AoxI	GGCC	2 cut(s)	108, 288
ApeKI	GCWGC	2 cut(s)	170, 374
AspS9I	GGNCC	1 cut(s)	404
AsuHPI	GGTGA	2 cut(s)	285, 444
AvaI	CYCGRG	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	404
BbvI	GCAGC	2 cut(s)	157, 361
BccI	CCATC	1 cut(s)	272
BciT130I	CCWGG	1 cut(s)	475
BcoDI	GTCTC	1 cut(s)	236
BfaI	CTAG	2 cut(s)	159, 203
BisI	GCNGC	2 cut(s)	171, 375
BlsI	GCNGC	2 cut(s)	172, 376
Bme1390I	CCNGG	1 cut(s)	475
Bme18I	GGWCC	1 cut(s)	404
BmeT110I	CYCGRG	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	404
BmiI	GGNNCC	1 cut(s)	405
BmrFI	CCNGG	1 cut(s)	475
BmsI	GCATC	4 cut(s)	71, 361, 460, 543
BpmI	CTGGAG	2 cut(s)	198, 594
BpuEI	CTTGAG	2 cut(s)	245, 431
BsaI	GGTCTC	1 cut(s)	236
BsaJI	CCNNGG	1 cut(s)	105
BsaXI	ACNNNNNCTCC	5 cut(s)	49, 79, 567, 578, 597
BseBI	CCWGG	1 cut(s)	475
BseDI	CCNNGG	1 cut(s)	105
BseGI	GGATG	3 cut(s)	152, 376, 475
BseMII	CTCAG	2 cut(s)	231, 277
BseXI	GCAGC	2 cut(s)	157, 361
BsgI	GTGCAG	1 cut(s)	516
BshFI	GGCC	2 cut(s)	110, 290
BsiHKCI	CYCGRG	1 cut(s)	185
BslFI	GGGAC	2 cut(s)	175, 191
BsmAI	GTCTC	1 cut(s)	236
BsmFI	GGGAC	2 cut(s)	175, 191
BsmI	GAATGC	1 cut(s)	394
BsnI	GGCC	2 cut(s)	110, 290
Bso31I	GGTCTC	1 cut(s)	236
BsoBI	CYCGRG	1 cut(s)	185
Bsp143I	GATC	1 cut(s)	363
BspACI	CCGC	1 cut(s)	44
BspANI	GGCC	2 cut(s)	110, 290
BspCNI	CTCAG	2 cut(s)	232, 276
BspLI	GGNNCC	1 cut(s)	405
BspTNI	GGTCTC	1 cut(s)	236
BsrBI	CCGCTC	1 cut(s)	46
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	1 cut(s)	363
Bst2UI	CCWGG	1 cut(s)	475
Bst4CI	ACNGT	2 cut(s)	116, 440
Bst6I	CTCTTC	2 cut(s)	45, 94
BstC8I	GCNNGC	1 cut(s)	359
BstDEI	CTNAG	2 cut(s)	240, 263
BstF5I	GGATG	3 cut(s)	152, 376, 475
BstKTI	GATC	1 cut(s)	366
BstMAI	GTCTC	1 cut(s)	236
BstMBI	GATC	1 cut(s)	363
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstNI	CCWGG	1 cut(s)	475
BstSCI	CCNGG	1 cut(s)	473
BstV1I	GCAGC	2 cut(s)	157, 361
BsuRI	GGCC	2 cut(s)	110, 290
BtsCI	GGATG	3 cut(s)	152, 376, 475
BtsIMutI	CAGTG	1 cut(s)	121
Cac8I	GCNNGC	1 cut(s)	359
Cfr13I	GGNCC	1 cut(s)	404
Csp6I	GTAC	2 cut(s)	410, 495
CviAII	CATG	2 cut(s)	367, 458
CviJI	RGCY	5 cut(s)	79, 85, 110, 134, 290
CviKI_1	RGCY	5 cut(s)	79, 85, 110, 134, 290
CviQI	GTAC	2 cut(s)	410, 495
DdeI	CTNAG	2 cut(s)	240, 263
DpnI	GATC	1 cut(s)	365
DpnII	GATC	1 cut(s)	363
EaeI	YGGCCR	1 cut(s)	108
Eam1104I	CTCTTC	2 cut(s)	45, 94
EarI	CTCTTC	2 cut(s)	45, 94
Eco147I	AGGCCT	1 cut(s)	290
Eco31I	GGTCTC	1 cut(s)	236
Eco47I	GGWCC	1 cut(s)	404
Eco88I	CYCGRG	1 cut(s)	185
EcoO109I	RGGNCCY	1 cut(s)	404
EcoRII	CCWGG	1 cut(s)	473
FaeI	CATG	2 cut(s)	370, 461
FaiI	YATR	4 cut(s)	168, 368, 459, 523
FaqI	GGGAC	2 cut(s)	175, 191
FatI	CATG	2 cut(s)	366, 457
FblI	GTMKAC	1 cut(s)	20
Fnu4HI	GCNGC	2 cut(s)	171, 375
FokI	GGATG	3 cut(s)	139, 383, 482
Fsp4HI	GCNGC	2 cut(s)	171, 375
FspBI	CTAG	2 cut(s)	159, 203
GluI	GCNGC	2 cut(s)	171, 375
GsuI	CTGGAG	2 cut(s)	198, 594
HaeIII	GGCC	2 cut(s)	110, 290
Hin1II	CATG	2 cut(s)	370, 461
HinfI	GANTC	5 cut(s)	188, 350, 432, 490, 545
HphI	GGTGA	2 cut(s)	285, 444
Hpy166II	GTNNAC	2 cut(s)	21, 463
Hpy188I	TCNGA	4 cut(s)	69, 131, 241, 311
Hpy188III	TCNNGA	3 cut(s)	138, 176, 215
Hpy8I	GTNNAC	2 cut(s)	21, 463
HpyAV	CCTTC	2 cut(s)	45, 575
HpyCH4III	ACNGT	2 cut(s)	116, 440
HpyCH4V	TGCA	6 cut(s)	62, 357, 377, 392, 533, 556
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	2 cut(s)	240, 263
Hsp92II	CATG	2 cut(s)	370, 461
Kzo9I	GATC	1 cut(s)	363
LmnI	GCTCC	1 cut(s)	178
LpnPI	CCDG	8 cut(s)	207, 228, 367, 420, 460, 487, 558, 582
Lsp1109I	GCAGC	2 cut(s)	157, 361
LweI	GCATC	4 cut(s)	71, 361, 460, 543
MaeI	CTAG	2 cut(s)	159, 203
MaeIII	GTNAC	1 cut(s)	450
MalI	GATC	1 cut(s)	365
MbiI	CCGCTC	1 cut(s)	46
MboI	GATC	1 cut(s)	363
MboII	GAAGA	4 cut(s)	3, 32, 81, 359
MluCI	AATT	2 cut(s)	312, 317
MlyI	GAGTC	1 cut(s)	197
MmeI	TCCRAC	2 cut(s)	92, 211
MnlI	CCTC	9 cut(s)	115, 154, 194, 220, 222, 301, 315, 518, 580
MseI	TTAA	2 cut(s)	122, 315
MslI	CAYNNNNRTG	1 cut(s)	468
MspR9I	CCNGG	1 cut(s)	475
Mva1269I	GAATGC	1 cut(s)	394
MvaI	CCWGG	1 cut(s)	475
MwoI	GCNNNNNNNGC	1 cut(s)	116
NdeII	GATC	1 cut(s)	363
NlaIII	CATG	2 cut(s)	370, 461
NlaIV	GGNNCC	1 cut(s)	405
NmeAIII	GCCGAG	1 cut(s)	86
NmuCI	GTSAC	1 cut(s)	450
PaeR7I	CTCGAG	1 cut(s)	185
PceI	AGGCCT	1 cut(s)	290
PctI	GAATGC	1 cut(s)	394
PfeI	GAWTC	4 cut(s)	350, 432, 490, 545
PkrI	GCNGC	2 cut(s)	172, 376
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
PpuMI	RGGWCCY	1 cut(s)	404
Psp5II	RGGWCCY	1 cut(s)	404
Psp6I	CCWGG	1 cut(s)	473
PspGI	CCWGG	1 cut(s)	473
PspN4I	GGNNCC	1 cut(s)	405
PspPI	GGNCC	1 cut(s)	404
PspPPI	RGGWCCY	1 cut(s)	404
PspXI	VCTCGAGB	1 cut(s)	185
RsaI	GTAC	2 cut(s)	411, 496
RsaNI	GTAC	2 cut(s)	410, 495
RseI	CAYNNNNRTG	1 cut(s)	468
SaqAI	TTAA	2 cut(s)	122, 315
SatI	GCNGC	2 cut(s)	171, 375
Sau3AI	GATC	1 cut(s)	363
Sau96I	GGNCC	1 cut(s)	404
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	1 cut(s)	475
SetI	ASST	9 cut(s)	87, 129, 136, 214, 231, 326, 479, 567, 591
SfaNI	GCATC	4 cut(s)	71, 361, 460, 543
Sfr274I	CTCGAG	1 cut(s)	185
SinI	GGWCC	1 cut(s)	404
SlaI	CTCGAG	1 cut(s)	185
SmiMI	CAYNNNNRTG	1 cut(s)	468
SmlI	CTYRAG	3 cut(s)	185, 224, 446
SmoI	CTYRAG	3 cut(s)	185, 224, 446
Sse9I	AATT	2 cut(s)	312, 317
SseBI	AGGCCT	1 cut(s)	290
SsiI	CCGC	1 cut(s)	44
SspMI	CTAG	2 cut(s)	159, 203
StuI	AGGCCT	1 cut(s)	290
StyD4I	CCNGG	1 cut(s)	473
TaaI	ACNGT	2 cut(s)	116, 440
TaqI	TCGA	1 cut(s)	186
TasI	AATT	2 cut(s)	312, 317
TfiI	GAWTC	4 cut(s)	350, 432, 490, 545
Tru1I	TTAA	2 cut(s)	122, 315
Tru9I	TTAA	2 cut(s)	122, 315
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	1 cut(s)	450
TseI	GCWGC	2 cut(s)	170, 374
Tsp45I	GTSAC	1 cut(s)	450
TspDTI	ATGAA	2 cut(s)	246, 470
TspRI	CASTG	1 cut(s)	121
VpaK11BI	GGWCC	1 cut(s)	404
XhoI	CTCGAG	1 cut(s)	185
XmiI	GTMKAC	1 cut(s)	20
XspI	CTAG	2 cut(s)	159, 203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.