RLG00000034928

30S ribosomal protein S10

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0010010
Physical Location & Seq
Forward (+)
57207050 .. 57209718
2669 bp
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UTR
Exon/CDS
Intron
RLM00000034928

Sequence Viewer

Length: 606 bp
ATGGCGGTTTCTTCAATCTCCGCAACCCTAATCCCTTCTCTTCCGCTCTCCAATTCTTCTCCATTTCCTTCCTCTAAAGCCAAGCTCGCTTCTTTCTCTTTGCCCGCTTCCCACAATGCCACAAAGCTTCGAGCTTTGAGACCCTCACAGTCCTCATCCACTAGGGTTTATGCTGCTCCTGAAGTCCTCGATAGCCCAGTTCCGCCTCCAGAAATCCTTGAAGGGCCCAATTCCGACGAGACTCCGAGCACTTCATCACTCAGCATTGGCGGGGATGACAAGATAACACCGAAGCAGAAGATTAGGATTAAGCTTAGATCATACTTTGTGCCTCTGATAGAGGATTCTTGCAAGCAGATAATGGATGCTGCAAGGAACACAAATGCAAAGACTATGGGTCCTGTGCCCTTACCAACCAAAAAACGGATCTACTGTGTTCTGAAATCACCCCATGTCCACAAGGATGCAAGCTTTGAAGAAAGGGGGCAGCTTAGGTGCTGGATTTCAAGTAAAAGCATATGGAGAAGGATTCAGTGGTTCATGTTCATTTTGTGGAGGGTGACAGACCTTAAGAGCAAGTTTTCTGATAATTTGACCCTTTCCTGA

Protein Analysis

202

Amino Acids

22.3

Weight (kDa)

9.89

Isoelectric Point (pI)

71.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S10 PF00338 102 - 156 4.9e-16 Ribosomal protein S10p/S20e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010010)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13120 AT3G13120 AT3G13120
fragaria_vesca FvH4_3g29500
malus_domestica MD03G1187000.v1.1 MD11G1202000.v1.1
prunus_persica Prupe.4G239600_v2.0.a1
pyrus_communis pycom03g13930 pycom11g17450
rosa_chinensis RchiOBHm_Chr5g0054381
rosa_laevigata RLG00000034928
rosa_multiflora Rmu_sc0005705.1_g000022
rosa_roxburghii Rroxscaffold_1G00026490
rosa_rugosa Rorug05G0286000 Rorug05G0286000
rosa_samantha Rh5AG356500 Rh5BG368100 Rh5CG391400 Rh5DG382300
rosa_wichuraiana Rw5G033490 Rw5G033660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 46
AciI CCGC 6 cut(s) 5, 21, 44, 105, 203, 270
AclWI GGATC 1 cut(s) 434
AcuI CTGAAG 1 cut(s) 201
AfiI CCNNNNNNNGG 1 cut(s) 423
AflII CTTAAG 1 cut(s) 569
AgsI TTSAA 4 cut(s) 15, 221, 476, 507
AhdI GACNNNNNGTC 1 cut(s) 396
AluBI AGCT 6 cut(s) 85, 127, 134, 313, 471, 490
AluI AGCT 6 cut(s) 85, 127, 134, 313, 471, 490
Alw21I GWGCWC 1 cut(s) 251
Alw26I GTCTC 2 cut(s) 133, 233
AlwI GGATC 1 cut(s) 434
AoxI GGCC 1 cut(s) 224
ApaI GGGCCC 1 cut(s) 228
ApeKI GCWGC 3 cut(s) 173, 368, 487
AspS9I GGNCC 3 cut(s) 224, 225, 398
AsuHPI GGTGA 2 cut(s) 438, 571
AvaII GGWCC 1 cut(s) 398
BaeGI GKGCMC 2 cut(s) 228, 408
BanII GRGCYC 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 251
BbvI GCAGC 3 cut(s) 160, 355, 499
BcoDI GTCTC 2 cut(s) 133, 233
BfaI CTAG 1 cut(s) 162
BfrI CTTAAG 1 cut(s) 569
BisI GCNGC 3 cut(s) 174, 369, 488
BlsI GCNGC 3 cut(s) 175, 370, 489
Bme18I GGWCC 1 cut(s) 398
BmeRI GACNNNNNGTC 1 cut(s) 396
BmgT120I GGNCC 3 cut(s) 224, 225, 398
BmiI GGNNCC 2 cut(s) 226, 399
BmrI ACTGGG 1 cut(s) 191
BmsI GCATC 2 cut(s) 355, 454
BmuI ACTGGG 1 cut(s) 191
BpmI CTGGAG 1 cut(s) 192
Bpu10I CCTNAGC 1 cut(s) 491
BsaI GGTCTC 1 cut(s) 133
Bsc4I CCNNNNNNNGG 1 cut(s) 423
Bse1I ACTGG 1 cut(s) 197
BseGI GGATG 4 cut(s) 155, 280, 370, 469
BseLI CCNNNNNNNGG 1 cut(s) 423
BseMII CTCAG 1 cut(s) 274
BseNI ACTGG 1 cut(s) 197
BseSI GKGCMC 2 cut(s) 228, 408
BseXI GCAGC 3 cut(s) 160, 355, 499
BshFI GGCC 1 cut(s) 226
BsiHKAI GWGCWC 1 cut(s) 251
BslI CCNNNNNNNGG 1 cut(s) 423
BsmAI GTCTC 2 cut(s) 133, 233
BsnI GGCC 1 cut(s) 226
Bso31I GGTCTC 1 cut(s) 133
Bsp120I GGGCCC 1 cut(s) 224
Bsp1286I GDGCHC 3 cut(s) 228, 251, 408
Bsp143I GATC 2 cut(s) 317, 426
BspACI CCGC 6 cut(s) 5, 21, 44, 105, 203, 270
BspANI GGCC 1 cut(s) 226
BspCNI CTCAG 1 cut(s) 273
BspLI GGNNCC 2 cut(s) 226, 399
BspPI GGATC 1 cut(s) 434
BspTI CTTAAG 1 cut(s) 569
BspTNI GGTCTC 1 cut(s) 133
BsrBI CCGCTC 1 cut(s) 46
BsrI ACTGG 1 cut(s) 197
BssMI GATC 2 cut(s) 317, 426
Bst4CI ACNGT 2 cut(s) 150, 434
Bst6I CTCTTC 1 cut(s) 45
BstAFI CTTAAG 1 cut(s) 569
BstC8I GCNNGC 4 cut(s) 87, 105, 353, 469
BstDEI CTNAG 3 cut(s) 260, 314, 491
BstF5I GGATG 4 cut(s) 155, 280, 370, 469
BstKTI GATC 2 cut(s) 320, 429
BstMAI GTCTC 2 cut(s) 133, 233
BstMBI GATC 2 cut(s) 317, 426
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstSLI GKGCMC 2 cut(s) 228, 408
BstV1I GCAGC 3 cut(s) 160, 355, 499
BstX2I RGATCY 1 cut(s) 426
BstYI RGATCY 1 cut(s) 426
BsuRI GGCC 1 cut(s) 226
BtsCI GGATG 4 cut(s) 155, 280, 370, 469
BtsIMutI CAGTG 1 cut(s) 539
Cac8I GCNNGC 4 cut(s) 87, 105, 353, 469
Cfr13I GGNCC 3 cut(s) 224, 225, 398
CviAII CATG 2 cut(s) 452, 541
CviJI RGCY 9 cut(s) 80, 85, 127, 134, 195, 226, 313, 471, 490
CviKI_1 RGCY 9 cut(s) 80, 85, 127, 134, 195, 226, 313, 471, 490
DdeI CTNAG 3 cut(s) 260, 314, 491
DpnI GATC 2 cut(s) 319, 428
DpnII GATC 2 cut(s) 317, 426
DriI GACNNNNNGTC 1 cut(s) 396
Eam1104I CTCTTC 1 cut(s) 45
Eam1105I GACNNNNNGTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 45
EciI GGCGGA 1 cut(s) 192
Eco24I GRGCYC 1 cut(s) 228
Eco31I GGTCTC 1 cut(s) 133
Eco47I GGWCC 1 cut(s) 398
Eco57I CTGAAG 1 cut(s) 201
EcoO109I RGGNCCY 2 cut(s) 224, 398
EcoT38I GRGCYC 1 cut(s) 228
FaeI CATG 2 cut(s) 455, 544
FaiI YATR 7 cut(s) 171, 322, 395, 453, 518, 520, 542
FatI CATG 2 cut(s) 451, 540
FauI CCCGC 2 cut(s) 112, 263
FauNDI CATATG 1 cut(s) 518
Fnu4HI GCNGC 3 cut(s) 174, 369, 488
FokI GGATG 4 cut(s) 142, 287, 377, 476
FriOI GRGCYC 1 cut(s) 228
Fsp4HI GCNGC 3 cut(s) 174, 369, 488
FspBI CTAG 1 cut(s) 162
GluI GCNGC 3 cut(s) 174, 369, 488
GsuI CTGGAG 1 cut(s) 192
HaeIII GGCC 1 cut(s) 226
Hin1II CATG 2 cut(s) 455, 544
HindIII AAGCTT 3 cut(s) 125, 311, 469
HinfI GANTC 3 cut(s) 241, 344, 529
HphI GGTGA 2 cut(s) 438, 571
Hpy166II GTNNAC 1 cut(s) 457
Hpy188I TCNGA 5 cut(s) 235, 246, 336, 441, 586
Hpy188III TCNNGA 3 cut(s) 179, 209, 603
Hpy8I GTNNAC 1 cut(s) 457
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 4 cut(s) 45, 78, 215, 519
HpyCH4III ACNGT 2 cut(s) 150, 434
HpyCH4V TGCA 4 cut(s) 351, 371, 386, 467
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 3 cut(s) 260, 314, 491
Hsp92II CATG 2 cut(s) 455, 544
Kzo9I GATC 2 cut(s) 317, 426
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 5 cut(s) 192, 210, 222, 414, 484
Lsp1109I GCAGC 3 cut(s) 160, 355, 499
LweI GCATC 2 cut(s) 355, 454
MaeI CTAG 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 559
MalI GATC 2 cut(s) 319, 428
MbiI CCGCTC 1 cut(s) 46
MboI GATC 2 cut(s) 317, 426
MboII GAAGA 5 cut(s) 3, 32, 48, 310, 488
MflI RGATCY 1 cut(s) 426
MhlI GDGCHC 3 cut(s) 228, 251, 408
MluCI AATT 3 cut(s) 52, 229, 589
MlyI GAGTC 1 cut(s) 235
MmeI TCCRAC 1 cut(s) 258
MnlI CCTC 8 cut(s) 82, 154, 163, 197, 216, 334, 342, 549
MseI TTAA 2 cut(s) 309, 570
MslI CAYNNNNRTG 1 cut(s) 462
MspCI CTTAAG 1 cut(s) 569
MwoI GCNNNNNNNGC 1 cut(s) 86
NdeI CATATG 1 cut(s) 518
NdeII GATC 2 cut(s) 317, 426
NlaIII CATG 2 cut(s) 455, 544
NlaIV GGNNCC 2 cut(s) 226, 399
NmuCI GTSAC 1 cut(s) 559
PfeI GAWTC 2 cut(s) 344, 529
PkrI GCNGC 3 cut(s) 175, 370, 489
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
PpuMI RGGWCCY 1 cut(s) 398
Psp5II RGGWCCY 1 cut(s) 398
PspN4I GGNNCC 2 cut(s) 226, 399
PspOMI GGGCCC 1 cut(s) 224
PspPI GGNCC 3 cut(s) 224, 225, 398
PspPPI RGGWCCY 1 cut(s) 398
PsuI RGATCY 1 cut(s) 426
RseI CAYNNNNRTG 1 cut(s) 462
SaqAI TTAA 2 cut(s) 309, 570
SatI GCNGC 3 cut(s) 174, 369, 488
Sau3AI GATC 2 cut(s) 317, 426
Sau96I GGNCC 3 cut(s) 224, 225, 398
SchI GAGTC 1 cut(s) 235
SduI GDGCHC 3 cut(s) 228, 251, 408
SetI ASST 8 cut(s) 87, 129, 136, 315, 473, 492, 497, 570
SfaNI GCATC 2 cut(s) 355, 454
SinI GGWCC 1 cut(s) 398
SmiMI CAYNNNNRTG 1 cut(s) 462
SmlI CTYRAG 1 cut(s) 569
SmoI CTYRAG 1 cut(s) 569
Sse9I AATT 3 cut(s) 52, 229, 589
SsiI CCGC 6 cut(s) 5, 21, 44, 105, 203, 270
SspMI CTAG 1 cut(s) 162
TaaI ACNGT 2 cut(s) 150, 434
TaqI TCGA 2 cut(s) 130, 189
TasI AATT 3 cut(s) 52, 229, 589
TfiI GAWTC 2 cut(s) 344, 529
Tru1I TTAA 2 cut(s) 309, 570
Tru9I TTAA 2 cut(s) 309, 570
TscAI CASTG 1 cut(s) 539
TseFI GTSAC 1 cut(s) 559
TseI GCWGC 3 cut(s) 173, 368, 487
Tsp45I GTSAC 1 cut(s) 559
TspDTI ATGAA 3 cut(s) 243, 529, 535
TspGWI ACGGA 1 cut(s) 439
TspRI CASTG 1 cut(s) 539
Vha464I CTTAAG 1 cut(s) 569
VpaK11BI GGWCC 1 cut(s) 398
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.