Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0010010

Physical Location & Seq

Genomic Coordinates Reverse (-)

33373038 .. 33376358

Gene Structure 3321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00026490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGCGGTTTCTTCAATTTCCGCAACCCTAATTCCTTCGCTTCCGCTCTCCAATTCTTCTCCATTTCCTTCCTCTAAAGCCAAGCTCACTTCTTTCTCTTTGCCCGCTTCCCACAATGCCACAAAGCTTCCAGCTTTGAGACCCTCACTGTCGTCATCCACTAGGGTTTATGCTGCTCCTGAAGTCCTCGATAGCCCAGTTCCGCCTCCGGAAATCCTTGAAGGGCCCAATTCCGACGAGACTCCGAGCACTTCGTCACTCAGCATTGGTGGGGATGATAAGATAACACCGAAGCAGAAGATTAGGATTAAGCTTAGATCGTACTTTGTGCCTCTGATAGAGGATTCTTGCAAGCAGATAATGGATGCTGCAAGGAACACAAATGCAAAGACTATGGGTCCTGTGCCCTTACCAACCAAAAAGCGGATCTACTGTGTTCTGAAATCACCCCATGTCCACAAGGATGCAAGGTTCCATTTTGAGATCCGTACCCACCAGCGACTTATTGACATTCTTTACCCAACTGCCCAGACGATCGATTCCTTGATGCAACTTGACCTTCCTGCTGGAGTTGATGTTGAGGTCAAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

197

Amino Acids

21.45

Weight (kDa)

9.25

Isoelectric Point (pI)

65.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S10	PF00338	102 - 196	1.4e-33	Ribosomal protein S10p/S20e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13120 AT3G13120 AT3G13120
fragaria_vesca	FvH4_3g29500
malus_domestica	MD03G1187000.v1.1 MD11G1202000.v1.1
prunus_persica	Prupe.4G239600_v2.0.a1
pyrus_communis	pycom03g13930 pycom11g17450
rosa_chinensis	RchiOBHm_Chr5g0054381
rosa_laevigata	RLG00000034928
rosa_multiflora	Rmu_sc0005705.1_g000022
rosa_roxburghii	Rroxscaffold_1G00026490
rosa_rugosa	Rorug05G0286000 Rorug05G0286000
rosa_samantha	Rh5AG356500 Rh5BG368100 Rh5CG391400 Rh5DG382300
rosa_wichuraiana	Rw5G033490 Rw5G033660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	46
AccIII	TCCGGA	1 cut(s)	208
AciI	CCGC	6 cut(s)	5, 21, 44, 105, 203, 424
AclWI	GGATC	2 cut(s)	434, 478
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	2 cut(s)	323, 490
AfiI	CCNNNNNNNGG	1 cut(s)	423
AgsI	TTSAA	2 cut(s)	15, 221
AhdI	GACNNNNNGTC	1 cut(s)	396
AloI	GAACNNNNNNTCC	2 cut(s)	455, 487
AluBI	AGCT	5 cut(s)	85, 127, 134, 313, 589
AluI	AGCT	5 cut(s)	85, 127, 134, 313, 589
Alw21I	GWGCWC	1 cut(s)	251
Alw26I	GTCTC	2 cut(s)	133, 233
AlwI	GGATC	2 cut(s)	434, 478
Aor13HI	TCCGGA	1 cut(s)	208
AoxI	GGCC	1 cut(s)	224
ApaI	GGGCCC	1 cut(s)	228
ApeKI	GCWGC	2 cut(s)	173, 368
AspS9I	GGNCC	3 cut(s)	224, 225, 398
AsuHPI	GGTGA	1 cut(s)	438
AvaII	GGWCC	1 cut(s)	398
BaeGI	GKGCMC	2 cut(s)	228, 408
BanII	GRGCYC	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	251
BbvI	GCAGC	2 cut(s)	160, 355
BcoDI	GTCTC	2 cut(s)	133, 233
BfaI	CTAG	1 cut(s)	162
BisI	GCNGC	2 cut(s)	174, 369
BlsI	GCNGC	2 cut(s)	175, 370
Bme18I	GGWCC	1 cut(s)	398
BmeRI	GACNNNNNGTC	1 cut(s)	396
BmgT120I	GGNCC	3 cut(s)	224, 225, 398
BmiI	GGNNCC	3 cut(s)	226, 399, 473
BmrI	ACTGGG	1 cut(s)	191
BmsI	GCATC	3 cut(s)	355, 454, 537
BmuI	ACTGGG	1 cut(s)	191
BpmI	CTGGAG	1 cut(s)	588
Bsa29I	ATCGAT	1 cut(s)	537
BsaI	GGTCTC	1 cut(s)	133
BsaWI	WCCGGW	1 cut(s)	208
BsaXI	ACNNNNNCTCC	2 cut(s)	561, 591
Bsc4I	CCNNNNNNNGG	1 cut(s)	423
Bse1I	ACTGG	1 cut(s)	197
BseAI	TCCGGA	1 cut(s)	208
BseCI	ATCGAT	1 cut(s)	537
BseGI	GGATG	4 cut(s)	155, 280, 370, 469
BseLI	CCNNNNNNNGG	1 cut(s)	423
BseMII	CTCAG	1 cut(s)	274
BseNI	ACTGG	1 cut(s)	197
BseSI	GKGCMC	2 cut(s)	228, 408
BseXI	GCAGC	2 cut(s)	160, 355
Bsh1285I	CGRYCG	1 cut(s)	537
BshFI	GGCC	1 cut(s)	226
BshVI	ATCGAT	1 cut(s)	537
BsiEI	CGRYCG	1 cut(s)	537
BsiHKAI	GWGCWC	1 cut(s)	251
BsiSI	CCGG	1 cut(s)	209
BslI	CCNNNNNNNGG	1 cut(s)	423
BsmAI	GTCTC	2 cut(s)	133, 233
BsnI	GGCC	1 cut(s)	226
Bso31I	GGTCTC	1 cut(s)	133
Bsp120I	GGGCCC	1 cut(s)	224
Bsp1286I	GDGCHC	3 cut(s)	228, 251, 408
Bsp13I	TCCGGA	1 cut(s)	208
Bsp143I	GATC	4 cut(s)	317, 426, 483, 534
BspACI	CCGC	6 cut(s)	5, 21, 44, 105, 203, 424
BspANI	GGCC	1 cut(s)	226
BspCNI	CTCAG	1 cut(s)	273
BspDI	ATCGAT	1 cut(s)	537
BspEI	TCCGGA	1 cut(s)	208
BspLI	GGNNCC	3 cut(s)	226, 399, 473
BspPI	GGATC	2 cut(s)	434, 478
BspTNI	GGTCTC	1 cut(s)	133
BsrBI	CCGCTC	1 cut(s)	46
BsrI	ACTGG	1 cut(s)	197
BssMI	GATC	4 cut(s)	317, 426, 483, 534
Bst4CI	ACNGT	2 cut(s)	150, 434
BstC8I	GCNNGC	2 cut(s)	105, 353
BstDEI	CTNAG	2 cut(s)	260, 314
BstF5I	GGATG	4 cut(s)	155, 280, 370, 469
BstKTI	GATC	4 cut(s)	320, 429, 486, 537
BstMAI	GTCTC	2 cut(s)	133, 233
BstMBI	GATC	4 cut(s)	317, 426, 483, 534
BstMCI	CGRYCG	1 cut(s)	537
BstSLI	GKGCMC	2 cut(s)	228, 408
BstV1I	GCAGC	2 cut(s)	160, 355
BstX2I	RGATCY	2 cut(s)	426, 483
BstYI	RGATCY	2 cut(s)	426, 483
Bsu15I	ATCGAT	1 cut(s)	537
BsuRI	GGCC	1 cut(s)	226
BsuTUI	ATCGAT	1 cut(s)	537
BtsCI	GGATG	4 cut(s)	155, 280, 370, 469
BtsIMutI	CAGTG	1 cut(s)	146
Cac8I	GCNNGC	2 cut(s)	105, 353
Cfr13I	GGNCC	3 cut(s)	224, 225, 398
ClaI	ATCGAT	1 cut(s)	537
Csp6I	GTAC	2 cut(s)	322, 489
CviAII	CATG	1 cut(s)	452
CviJI	RGCY	8 cut(s)	80, 85, 127, 134, 195, 226, 313, 589
CviKI_1	RGCY	8 cut(s)	80, 85, 127, 134, 195, 226, 313, 589
CviQI	GTAC	2 cut(s)	322, 489
DdeI	CTNAG	2 cut(s)	260, 314
DpnI	GATC	4 cut(s)	319, 428, 485, 536
DpnII	GATC	4 cut(s)	317, 426, 483, 534
DriI	GACNNNNNGTC	1 cut(s)	396
Eam1105I	GACNNNNNGTC	1 cut(s)	396
EciI	GGCGGA	1 cut(s)	192
Eco24I	GRGCYC	1 cut(s)	228
Eco31I	GGTCTC	1 cut(s)	133
Eco47I	GGWCC	1 cut(s)	398
Eco57I	CTGAAG	1 cut(s)	201
EcoO109I	RGGNCCY	2 cut(s)	224, 398
EcoT38I	GRGCYC	1 cut(s)	228
FaeI	CATG	1 cut(s)	455
FaiI	YATR	3 cut(s)	171, 395, 453
FatI	CATG	1 cut(s)	451
FauI	CCCGC	1 cut(s)	112
Fnu4HI	GCNGC	2 cut(s)	174, 369
FokI	GGATG	4 cut(s)	142, 287, 377, 476
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	2 cut(s)	174, 369
FspBI	CTAG	1 cut(s)	162
GluI	GCNGC	2 cut(s)	174, 369
GsuI	CTGGAG	1 cut(s)	588
HaeIII	GGCC	1 cut(s)	226
HapII	CCGG	1 cut(s)	209
Hin1II	CATG	1 cut(s)	455
HindIII	AAGCTT	3 cut(s)	125, 311, 587
HinfI	GANTC	3 cut(s)	241, 344, 539
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	1 cut(s)	438
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188I	TCNGA	4 cut(s)	235, 246, 336, 441
Hpy188III	TCNNGA	2 cut(s)	179, 209
Hpy8I	GTNNAC	1 cut(s)	457
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	4 cut(s)	45, 78, 215, 569
HpyCH4III	ACNGT	2 cut(s)	150, 434
HpyCH4V	TGCA	5 cut(s)	351, 371, 386, 467, 550
HpyF3I	CTNAG	2 cut(s)	260, 314
Hsp92II	CATG	1 cut(s)	455
Kpn2I	TCCGGA	1 cut(s)	208
Kzo9I	GATC	4 cut(s)	317, 426, 483, 534
LmnI	GCTCC	1 cut(s)	181
LpnPI	CCDG	9 cut(s)	144, 192, 210, 222, 414, 509, 542, 552, 576
Lsp1109I	GCAGC	2 cut(s)	160, 355
LweI	GCATC	3 cut(s)	355, 454, 537
MaeI	CTAG	1 cut(s)	162
MaeIII	GTNAC	1 cut(s)	255
MalI	GATC	4 cut(s)	319, 428, 485, 536
MbiI	CCGCTC	1 cut(s)	46
MboI	GATC	4 cut(s)	317, 426, 483, 534
MboII	GAAGA	3 cut(s)	3, 48, 310
MflI	RGATCY	2 cut(s)	426, 483
MhlI	GDGCHC	3 cut(s)	228, 251, 408
MluCI	AATT	4 cut(s)	15, 30, 52, 229
MlyI	GAGTC	1 cut(s)	235
MmeI	TCCRAC	1 cut(s)	258
MnlI	CCTC	7 cut(s)	82, 154, 197, 216, 334, 342, 574
MroI	TCCGGA	1 cut(s)	208
MseI	TTAA	1 cut(s)	309
MslI	CAYNNNNRTG	1 cut(s)	462
MspI	CCGG	1 cut(s)	209
NdeII	GATC	4 cut(s)	317, 426, 483, 534
NlaIII	CATG	1 cut(s)	455
NlaIV	GGNNCC	3 cut(s)	226, 399, 473
NmuCI	GTSAC	1 cut(s)	255
PfeI	GAWTC	2 cut(s)	344, 539
PkrI	GCNGC	2 cut(s)	175, 370
Ple19I	CGATCG	1 cut(s)	537
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
PpuMI	RGGWCCY	1 cut(s)	398
Psp5II	RGGWCCY	1 cut(s)	398
PspN4I	GGNNCC	3 cut(s)	226, 399, 473
PspOMI	GGGCCC	1 cut(s)	224
PspPI	GGNCC	3 cut(s)	224, 225, 398
PspPPI	RGGWCCY	1 cut(s)	398
PsuI	RGATCY	2 cut(s)	426, 483
PvuI	CGATCG	1 cut(s)	537
RsaI	GTAC	2 cut(s)	323, 490
RsaNI	GTAC	2 cut(s)	322, 489
RseI	CAYNNNNRTG	1 cut(s)	462
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	2 cut(s)	174, 369
Sau3AI	GATC	4 cut(s)	317, 426, 483, 534
Sau96I	GGNCC	3 cut(s)	224, 225, 398
SchI	GAGTC	1 cut(s)	235
SduI	GDGCHC	3 cut(s)	228, 251, 408
SetI	ASST	8 cut(s)	87, 129, 136, 315, 473, 561, 585, 591
SfaNI	GCATC	3 cut(s)	355, 454, 537
SinI	GGWCC	1 cut(s)	398
SmiMI	CAYNNNNRTG	1 cut(s)	462
Sse9I	AATT	4 cut(s)	15, 30, 52, 229
SsiI	CCGC	6 cut(s)	5, 21, 44, 105, 203, 424
SspMI	CTAG	1 cut(s)	162
TaaI	ACNGT	2 cut(s)	150, 434
TaqI	TCGA	2 cut(s)	189, 537
TasI	AATT	4 cut(s)	15, 30, 52, 229
TfiI	GAWTC	2 cut(s)	344, 539
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	1 cut(s)	153
TseFI	GTSAC	1 cut(s)	255
TseI	GCWGC	2 cut(s)	173, 368
Tsp45I	GTSAC	1 cut(s)	255
TspGWI	ACGGA	1 cut(s)	476
TspRI	CASTG	1 cut(s)	153
VpaK11BI	GGWCC	1 cut(s)	398
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.