AT3G13224

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009344
Physical Location & Seq
Forward (+)
4254726 .. 4257409
2684 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G13224.1

Sequence Viewer

Length: 696 bp
ATGGGTTCCAGATCTCGTAATGATAATTTCCAGTCCGGCGATGGCGCTAGTCCTGGGAAAATATTCATTGGAGGATTGCACAAAGACACGACTAATACTGTGTTCAATAAGCACTTTGGCAAGTACGGGGAGATTACAGATTCTGTCATTATGCGAGATCGACATACTGGACAACCTAGGGGTTTCGGTTTCATCACCTTCGCTGACCCTTCTGTTGTTGACAAAGTTATCGAAGATACTCATGTCATCAATGGCAAACAGGTTGAGATCAAAAGGACTATTCCGAAAGGTGCTGGTGGCAATCAGTCAAAGGACATCAAAACAAAGAAGATTTTCGTTGGTGGTATACCCTCAACGGTTACAGAAGATGAACTTAAGGACTTCTTTGCCAAGTATGGGAACGTGGTGGAGCACCAGGTTATTCGAGACCATGAAACAAACAGGTCCAGAGGTTTTGGTTTTGTAATTTTTGATAGCGAAGAAGTCGTAGATGAATTATTGTCCAAAGGAAACATGATCGATATGGCAGACACTCAGGTAAGCTTGTACAAATGGGGATTAGAATTTTGGTTCATGATGACATATTTATCTTGGTTTCAATTTGATATTTTCTCCTTGTTCCTTTCATTATACACGTTTAACTTAGTTAGAATTCTACCCACTAGCTTACCAAATGTAAGGAGCTTGTCACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0000902 GO:0000904 GO:0001667 GO:0002064 GO:0002065 GO:0002066 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006403 GO:0006417 GO:0006928 GO:0006935 GO:0007028 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007297 GO:0007298 GO:0007308 GO:0007309 GO:0007314 GO:0007315 GO:0007316 GO:0007319 GO:0007350 GO:0007351 GO:0007389 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008298 GO:0008358 GO:0008595 GO:0009605 GO:0009653 GO:0009790 GO:0009798 GO:0009880 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009948 GO:0009952 GO:0009987 GO:0009994 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010631 GO:0016043 GO:0016477 GO:0017148 GO:0019094 GO:0019219 GO:0019222 GO:0019953 GO:0021700 GO:0022008 GO:0022412 GO:0022414 GO:0022607 GO:0030030 GO:0030154 GO:0030182 GO:0030707 GO:0030855 GO:0031175 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0032990 GO:0032991 GO:0033036 GO:0034248 GO:0034249 GO:0034250 GO:0035282 GO:0035770 GO:0036464 GO:0040011 GO:0042221 GO:0042330 GO:0043186 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045451 GO:0045495 GO:0045727 GO:0046011 GO:0048024 GO:0048027 GO:0048468 GO:0048469 GO:0048477 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048599 GO:0048609 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0048870 GO:0050684 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051641 GO:0051674 GO:0051704 GO:0060255 GO:0060293 GO:0060429 GO:0060810 GO:0060811 GO:0061564 GO:0065007 GO:0070013 GO:0070727 GO:0071840 GO:0080090 GO:0090130 GO:0090132 GO:0097159 GO:0097485 GO:0120036 GO:0120039 GO:1901363 GO:1903311 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

231

Amino Acids

26.14

Weight (kDa)

6.6

Isoelectric Point (pI)

27.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 21 - 88 4.4e-15 RNA recognition motif
RRM_7 PF16367 109 - 170 7.5e-10 RNA recognition motif
RRM_1 PF00076 111 - 169 1.5e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 346
AcsI RAATTY 2 cut(s) 563, 651
AfaI GTAC 2 cut(s) 125, 548
AfiI CCNNNNNNNGG 1 cut(s) 396
AflII CTTAAG 1 cut(s) 374
AflIII ACRYGT 1 cut(s) 633
AgsI TTSAA 2 cut(s) 106, 599
AjnI CCWGG 2 cut(s) 52, 414
AluBI AGCT 3 cut(s) 543, 666, 684
AluI AGCT 3 cut(s) 543, 666, 684
Alw21I GWGCWC 1 cut(s) 414
Alw26I GTCTC 1 cut(s) 420
AlwNI CAGNNNCTG 1 cut(s) 143
ApoI RAATTY 2 cut(s) 563, 651
Asp700I GAANNNNTTC 2 cut(s) 62, 332
AspA2I CCTAGG 1 cut(s) 176
AspLEI GCGC 1 cut(s) 47
AspS9I GGNCC 1 cut(s) 444
AsuHPI GGTGA 1 cut(s) 187
AvaII GGWCC 1 cut(s) 444
AvrII CCTAGG 1 cut(s) 176
BaeI ACNNNNGTAYC 2 cut(s) 228, 261
Bbv12I GWGCWC 1 cut(s) 414
BccI CCATC 1 cut(s) 35
BciT130I CCWGG 2 cut(s) 54, 416
BcoDI GTCTC 1 cut(s) 420
BfaI CTAG 3 cut(s) 48, 177, 663
BfoI RGCGCY 1 cut(s) 48
BfrI CTTAAG 1 cut(s) 374
BglII AGATCT 1 cut(s) 11
BlnI CCTAGG 1 cut(s) 176
Bme1390I CCNGG 2 cut(s) 54, 416
Bme18I GGWCC 1 cut(s) 444
BmgT120I GGNCC 1 cut(s) 444
BmiI GGNNCC 1 cut(s) 7
BmrFI CCNGG 2 cut(s) 54, 416
Bsa29I ATCGAT 1 cut(s) 519
BsaI GGTCTC 1 cut(s) 420
BsaJI CCNNGG 2 cut(s) 53, 176
Bsc4I CCNNNNNNNGG 1 cut(s) 396
Bse1I ACTGG 2 cut(s) 31, 172
BseBI CCWGG 2 cut(s) 54, 416
BseCI ATCGAT 1 cut(s) 519
BseDI CCNNGG 2 cut(s) 53, 176
BseLI CCNNNNNNNGG 1 cut(s) 396
BseMII CTCAG 1 cut(s) 548
BseNI ACTGG 2 cut(s) 31, 172
BshVI ATCGAT 1 cut(s) 519
BsiHKAI GWGCWC 1 cut(s) 414
BsiSI CCGG 1 cut(s) 36
BslI CCNNNNNNNGG 1 cut(s) 396
BsmAI GTCTC 1 cut(s) 420
Bso31I GGTCTC 1 cut(s) 420
Bsp1286I GDGCHC 1 cut(s) 414
Bsp1407I TGTACA 1 cut(s) 546
Bsp143I GATC 4 cut(s) 11, 157, 267, 516
BspCNI CTCAG 1 cut(s) 547
BspDI ATCGAT 1 cut(s) 519
BspHI TCATGA 1 cut(s) 573
BspLI GGNNCC 1 cut(s) 7
BspTI CTTAAG 1 cut(s) 374
BspTNI GGTCTC 1 cut(s) 420
BsrGI TGTACA 1 cut(s) 546
BsrI ACTGG 2 cut(s) 31, 172
BssECI CCNNGG 2 cut(s) 53, 176
BssMI GATC 4 cut(s) 11, 157, 267, 516
BssNAI GTATAC 1 cut(s) 347
BssT1I CCWWGG 1 cut(s) 176
Bst1107I GTATAC 1 cut(s) 347
Bst2UI CCWGG 2 cut(s) 54, 416
Bst4CI ACNGT 3 cut(s) 100, 358, 693
BstAFI CTTAAG 1 cut(s) 374
BstAUI TGTACA 1 cut(s) 546
BstDEI CTNAG 2 cut(s) 534, 643
BstH2I RGCGCY 1 cut(s) 48
BstHHI GCGC 1 cut(s) 47
BstKTI GATC 4 cut(s) 14, 160, 270, 519
BstMAI GTCTC 1 cut(s) 420
BstMBI GATC 4 cut(s) 11, 157, 267, 516
BstNI CCWGG 2 cut(s) 54, 416
BstSCI CCNGG 2 cut(s) 52, 414
BstX2I RGATCY 1 cut(s) 11
BstYI RGATCY 1 cut(s) 11
BstZ17I GTATAC 1 cut(s) 347
Bsu15I ATCGAT 1 cut(s) 519
BsuTUI ATCGAT 1 cut(s) 519
BtgZI GCGATG 1 cut(s) 54
CaiI CAGNNNCTG 1 cut(s) 143
CciI TCATGA 1 cut(s) 573
CfoI GCGC 1 cut(s) 47
Cfr13I GGNCC 1 cut(s) 444
ClaI ATCGAT 1 cut(s) 519
CsiI ACCWGGT 1 cut(s) 414
Csp6I GTAC 2 cut(s) 124, 547
CviAII CATG 4 cut(s) 242, 431, 514, 574
CviJI RGCY 3 cut(s) 543, 666, 684
CviKI_1 RGCY 3 cut(s) 543, 666, 684
CviQI GTAC 2 cut(s) 124, 547
DdeI CTNAG 2 cut(s) 534, 643
DpnI GATC 4 cut(s) 13, 159, 269, 518
DpnII GATC 4 cut(s) 11, 157, 267, 516
Eco130I CCWWGG 1 cut(s) 176
Eco31I GGTCTC 1 cut(s) 420
Eco47I GGWCC 1 cut(s) 444
EcoRI GAATTC 1 cut(s) 651
EcoRII CCWGG 2 cut(s) 52, 414
EcoT14I CCWWGG 1 cut(s) 176
ErhI CCWWGG 1 cut(s) 176
FaeI CATG 4 cut(s) 245, 434, 517, 577
FalI AAGNNNNNCTT 4 cut(s) 357, 389, 368, 400
FatI CATG 4 cut(s) 241, 430, 513, 573
FblI GTMKAC 1 cut(s) 346
FspBI CTAG 3 cut(s) 48, 177, 663
GlaI GCGC 1 cut(s) 46
HaeII RGCGCY 1 cut(s) 48
HapII CCGG 1 cut(s) 36
HhaI GCGC 1 cut(s) 47
Hin1II CATG 4 cut(s) 245, 434, 517, 577
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HindIII AAGCTT 1 cut(s) 541
HinfI GANTC 1 cut(s) 140
HpaII CCGG 1 cut(s) 36
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 2 cut(s) 220, 347
Hpy188I TCNGA 1 cut(s) 285
Hpy188III TCNNGA 4 cut(s) 9, 425, 447, 574
Hpy8I GTNNAC 2 cut(s) 220, 347
HpyAV CCTTC 2 cut(s) 208, 219
HpyCH4III ACNGT 3 cut(s) 100, 358, 693
HpyCH4IV ACGT 2 cut(s) 402, 635
HpyCH4V TGCA 1 cut(s) 79
HpyF3I CTNAG 2 cut(s) 534, 643
HpySE526I ACGT 2 cut(s) 402, 635
Hsp92II CATG 4 cut(s) 245, 434, 517, 577
HspAI GCGC 1 cut(s) 45
Kzo9I GATC 4 cut(s) 11, 157, 267, 516
LmnI GCTCC 2 cut(s) 409, 681
MabI ACCWGGT 1 cut(s) 414
MaeI CTAG 3 cut(s) 48, 177, 663
MaeII ACGT 2 cut(s) 402, 635
MaeIII GTNAC 2 cut(s) 358, 687
MalI GATC 4 cut(s) 13, 159, 269, 518
MboI GATC 4 cut(s) 11, 157, 267, 516
MboII GAAGA 4 cut(s) 245, 340, 377, 491
MflI RGATCY 1 cut(s) 11
MhlI GDGCHC 1 cut(s) 414
MluCI AATT 6 cut(s) 25, 465, 494, 563, 599, 651
MnlI CCTC 3 cut(s) 65, 361, 443
MroXI GAANNNNTTC 2 cut(s) 62, 332
MseI TTAA 2 cut(s) 375, 639
MspCI CTTAAG 1 cut(s) 374
MspI CCGG 1 cut(s) 36
MspR9I CCNGG 2 cut(s) 54, 416
MvaI CCWGG 2 cut(s) 54, 416
NdeII GATC 4 cut(s) 11, 157, 267, 516
NlaIII CATG 4 cut(s) 245, 434, 517, 577
NlaIV GGNNCC 1 cut(s) 7
NmuCI GTSAC 1 cut(s) 687
PagI TCATGA 1 cut(s) 573
PdmI GAANNNNTTC 2 cut(s) 62, 332
PfeI GAWTC 1 cut(s) 140
Psp6I CCWGG 2 cut(s) 52, 414
PspGI CCWGG 2 cut(s) 52, 414
PspN4I GGNNCC 1 cut(s) 7
PspPI GGNCC 1 cut(s) 444
PstNI CAGNNNCTG 1 cut(s) 143
PsuI RGATCY 1 cut(s) 11
RsaI GTAC 2 cut(s) 125, 548
RsaNI GTAC 2 cut(s) 124, 547
SaqAI TTAA 2 cut(s) 375, 639
Sau3AI GATC 4 cut(s) 11, 157, 267, 516
Sau96I GGNCC 1 cut(s) 444
ScrFI CCNGG 2 cut(s) 54, 416
SduI GDGCHC 1 cut(s) 414
SexAI ACCWGGT 1 cut(s) 414
SinI GGWCC 1 cut(s) 444
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
Sse9I AATT 6 cut(s) 25, 465, 494, 563, 599, 651
SspI AATATT 1 cut(s) 63
SspMI CTAG 3 cut(s) 48, 177, 663
StyD4I CCNGG 2 cut(s) 52, 414
StyI CCWWGG 1 cut(s) 176
TaaI ACNGT 3 cut(s) 100, 358, 693
TaiI ACGT 2 cut(s) 405, 638
TaqI TCGA 4 cut(s) 160, 231, 424, 519
TasI AATT 6 cut(s) 25, 465, 494, 563, 599, 651
TatI WGTACW 1 cut(s) 546
TfiI GAWTC 1 cut(s) 140
Tru1I TTAA 2 cut(s) 375, 639
Tru9I TTAA 2 cut(s) 375, 639
TseFI GTSAC 1 cut(s) 687
Tsp45I GTSAC 1 cut(s) 687
TspDTI ATGAA 7 cut(s) 55, 181, 384, 447, 507, 562, 615
Vha464I CTTAAG 1 cut(s) 374
VpaK11BI GGWCC 1 cut(s) 444
XapI RAATTY 2 cut(s) 563, 651
XcmI CCANNNNNNNNNTGG 1 cut(s) 38
XmaJI CCTAGG 1 cut(s) 176
XmiI GTMKAC 1 cut(s) 346
XmnI GAANNNNTTC 2 cut(s) 62, 332
XspI CTAG 3 cut(s) 48, 177, 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.